Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0012560

Physical Location & Seq

Genomic Coordinates Forward (+)

5098431 .. 5101569

Gene Structure 3139 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g09520.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1269 bp

ATGATGGACGAGATTCTTGATCATTTTTTCAGTTCCTCATCATGGACAGATGTGGATGTGAAGGAAAGATCGTGTTTGGACTGTTACGAAAATCCACCAACAAACGAAATGCTTCTCAGTTCAATTGGAGTAGGTATAATTGAAGATGACAGCAATAACTCTGCTACAAATCTGAGCAACTCAAACCAAAGCATGGAGAGCATGGCTGCACAGTCTGCTAATTCATCTGTTGCTCATGAGTTTGAGTCAGATGCACAAGACAATGGTAACAACTGCTCGGCCAACTTTTCAAATGATCAAATGGGGCTGCACTATGATATGGATGGTAACATGGTGAGATCAACATCTGTTTCGTGCCTAGAGCCACAAAATGTGAGATGCAATTGCTGTGAACAGTCTGTCTTTCAGAGACTAAATGGAGATTTTGAAAACCCTTCTCCAATTTCTCAGCTGTGGCCTCTTCAAGCTTATGAGGGTGTCTCTTCTTCTCTTTGTCCTCCTGGTATGGGACAACAGAAGCTGTGCAGTTACAGCAGTAATGATATTTATGAGTTGTCTGATTTAGTCACCACAGAGAAGGTAAAGCAGGAAATGGGAAACTATCCTTTGCCCACTTTTGCTTCTGGGCCTCAGATTCCAATGGCAATGACTGGATTGCAGTCTTTCCCACAGACTACATCAACTAGCCCATCTGCTGAATGTATTGGACCTAGAAAGCCTCGTATAAGGGCACGTCGAGGCCAGGCAACTGATCCACACAGTATTGCTGAAAGGCTTCGGAGAGAGAAAATAGCTGACAGAATGAAGAATCTGCAAGAACTTGTACCAAAGTCTAACAAGACTGACAAGGCATCTATGCTTGATGAAATCATCGAGTATGTCAAGTTTCTTCAGCAACAAGTCAAGGTTCTAAGCGCACGCAGATTGGGAGCTACAGGGGCTAAGGGGACCAATGGGATGTCAGATTTTCCGTCACTTGGTCATGACATTTCTTTCAATGAAATTGCTTTTGAACAAGTATTGAAGCTGATGGAAACTGATGTGACAAAGGCAATGCAGTACCTTCAAAGCAAAGGTCTCTGCATGATGTCCATCGCTCTTGCCAATGCCATACTGACCGAAAAGGAATCTTCACCGCCTCCTGATTCTGCCGAGAATTCAAAGAACTCCGGCTTCACTGATGATGGCTTTGTTCACAACCCCAGCAGCAGCAGTAGCAGTAACAGCACCACCTTGCCTGGCACCGATCAAGCGGCTGCGAATCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR zf-C3HC4

Protein Analysis

423

Amino Acids

46.05

Weight (kDa)

4.71

Isoelectric Point (pI)

54.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	253 - 298	3.4e-10	Helix-loop-helix DNA-binding domain
bHLH_SAC51	PF23173	257 - 303	3.2e-06	Transcription factor SAC51 bHLH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012560)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g09520 FvH4_1g09520
malus_domestica	MD02G1103800.v1.1
prunus_persica	Prupe.7G191100_v2.0.a1 Prupe.7G191100_v2.0.a1 Prupe.7G191100_v2.0.a1 Prupe.7G191100_v2.0.a1
pyrus_communis	pycom02g08150
rosa_chinensis	RchiOBHm_Chr2g0096091
rosa_laevigata	RLG00000016624
rosa_multiflora	Rmu_sc0005612.1_g000002 Rmu_sc0005996.1_g000005
rosa_roxburghii	Rroxscaffold_2G00145760
rosa_rugosa	Rorug02G0056900
rosa_samantha	Rh2AG103900 Rh2BG106000 Rh2CG107900 Rh2DG106600
rosa_wichuraiana	Rw2G007980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1241
AccB7I	CCANNNNNTGG	1 cut(s)	193
AciI	CCGC	2 cut(s)	1136, 1253
AclWI	GGATC	1 cut(s)	746
AcoI	YGGCCR	1 cut(s)	279
AcsI	RAATTY	1 cut(s)	1156
AcuI	CTGAAG	1 cut(s)	875
AfaI	GTAC	2 cut(s)	825, 1061
AfiI	CCNNNNNNNGG	4 cut(s)	42, 193, 506, 977
AjiI	CACGTC	1 cut(s)	734
AjnI	CCWGG	3 cut(s)	499, 741, 1237
AluBI	AGCT	6 cut(s)	451, 467, 520, 794, 932, 1027
AluI	AGCT	6 cut(s)	451, 467, 520, 794, 932, 1027
Alw26I	GTCTC	3 cut(s)	403, 484, 1082
AlwI	GGATC	1 cut(s)	746
AlwNI	CAGNNNCTG	1 cut(s)	520
AoxI	GGCC	4 cut(s)	279, 455, 626, 739
ApeKI	GCWGC	5 cut(s)	206, 307, 1206, 1209, 1256
ApoI	RAATTY	1 cut(s)	1156
ArsI	GACNNNNNNTTYG	2 cut(s)	1060, 1092
Asp700I	GAANNNNTTC	2 cut(s)	111, 774
AspLEI	GCGC	1 cut(s)	917
AspS9I	GGNCC	3 cut(s)	626, 707, 948
AsuHPI	GGTGA	3 cut(s)	346, 559, 1125
AvaII	GGWCC	2 cut(s)	707, 948
BaeGI	GKGCMC	1 cut(s)	733
BanI	GGYRCC	1 cut(s)	1241
BbvI	GCAGC	5 cut(s)	193, 294, 1218, 1221, 1243
BccI	CCATC	5 cut(s)	317, 697, 1024, 1100, 1178
BciT130I	CCWGG	3 cut(s)	501, 743, 1239
BclI	TGATCA	2 cut(s)	19, 295
BcoDI	GTCTC	3 cut(s)	403, 484, 1082
BfaI	CTAG	3 cut(s)	359, 684, 711
BfmI	CTRYAG	1 cut(s)	933
BisI	GCNGC	6 cut(s)	207, 308, 1207, 1210, 1254, 1257
BlsI	GCNGC	6 cut(s)	208, 309, 1208, 1211, 1255, 1258
Bme1390I	CCNGG	3 cut(s)	501, 743, 1239
Bme18I	GGWCC	2 cut(s)	707, 948
BmgBI	CACGTC	1 cut(s)	734
BmgT120I	GGNCC	3 cut(s)	626, 707, 948
BmiI	GGNNCC	2 cut(s)	949, 1243
BmrFI	CCNGG	3 cut(s)	501, 743, 1239
BmsI	GCATC	3 cut(s)	241, 368, 860
BplI	GAGNNNNNCTC	2 cut(s)	464, 496
Bpu10I	CCTNAGC	1 cut(s)	942
BsaBI	GATNNNNATC	2 cut(s)	343, 1091
BsaI	GGTCTC	1 cut(s)	1082
Bsc4I	CCNNNNNNNGG	4 cut(s)	42, 193, 506, 977
Bse1I	ACTGG	1 cut(s)	655
Bse3DI	GCAATG	2 cut(s)	651, 1059
Bse8I	GATNNNNATC	2 cut(s)	343, 1091
BseBI	CCWGG	3 cut(s)	501, 743, 1239
BseGI	GGATG	3 cut(s)	61, 328, 963
BseJI	GATNNNNATC	2 cut(s)	343, 1091
BseLI	CCNNNNNNNGG	4 cut(s)	42, 193, 506, 977
BseMI	GCAATG	2 cut(s)	651, 1059
BseMII	CTCAG	4 cut(s)	130, 164, 461, 644
BseNI	ACTGG	1 cut(s)	655
BseSI	GKGCMC	1 cut(s)	733
BseXI	GCAGC	5 cut(s)	193, 294, 1218, 1221, 1243
BseYI	CCCAGC	1 cut(s)	1202
BsgI	GTGCAG	3 cut(s)	192, 293, 544
BshFI	GGCC	4 cut(s)	281, 457, 628, 741
BshNI	GGYRCC	1 cut(s)	1241
BsiSI	CCGG	1 cut(s)	1170
BslFI	GGGAC	2 cut(s)	522, 961
BslI	CCNNNNNNNGG	4 cut(s)	42, 193, 506, 977
BsmAI	GTCTC	3 cut(s)	403, 484, 1082
BsmFI	GGGAC	2 cut(s)	522, 961
BsnI	GGCC	4 cut(s)	281, 457, 628, 741
Bso31I	GGTCTC	1 cut(s)	1082
Bsp1286I	GDGCHC	1 cut(s)	733
Bsp143I	GATC	6 cut(s)	19, 68, 295, 338, 751, 1246
BspACI	CCGC	2 cut(s)	1136, 1253
BspANI	GGCC	4 cut(s)	281, 457, 628, 741
BspCNI	CTCAG	4 cut(s)	129, 165, 460, 643
BspHI	TCATGA	2 cut(s)	235, 982
BspLI	GGNNCC	2 cut(s)	949, 1243
BspPI	GGATC	1 cut(s)	746
BspT107I	GGYRCC	1 cut(s)	1241
BspTNI	GGTCTC	1 cut(s)	1082
BsrDI	GCAATG	2 cut(s)	651, 1059
BsrI	ACTGG	1 cut(s)	655
BssMI	GATC	6 cut(s)	19, 68, 295, 338, 751, 1246
Bst2UI	CCWGG	3 cut(s)	501, 743, 1239
Bst4CI	ACNGT	4 cut(s)	83, 213, 396, 761
Bst6I	CTCTTC	2 cut(s)	465, 487
BstAPI	GCANNNNNTGC	1 cut(s)	215
BstC8I	GCNNGC	1 cut(s)	919
BstDEI	CTNAG	6 cut(s)	116, 173, 447, 630, 911, 942
BstF5I	GGATG	3 cut(s)	61, 328, 963
BstHHI	GCGC	1 cut(s)	917
BstKTI	GATC	6 cut(s)	22, 71, 298, 341, 754, 1249
BstMAI	GTCTC	3 cut(s)	403, 484, 1082
BstMBI	GATC	6 cut(s)	19, 68, 295, 338, 751, 1246
BstMWI	GCNNNNNNNGC	6 cut(s)	198, 215, 531, 938, 1215, 1224
BstNI	CCWGG	3 cut(s)	501, 743, 1239
BstSCI	CCNGG	3 cut(s)	499, 741, 1237
BstSFI	CTRYAG	1 cut(s)	933
BstSLI	GKGCMC	1 cut(s)	733
BstV1I	GCAGC	5 cut(s)	193, 294, 1218, 1221, 1243
BsuRI	GGCC	4 cut(s)	281, 457, 628, 741
BtgZI	GCGATG	1 cut(s)	1078
BtrI	CACGTC	1 cut(s)	734
BtsCI	GGATG	3 cut(s)	61, 328, 963
BtsIMutI	CAGTG	1 cut(s)	1176
Cac8I	GCNNGC	1 cut(s)	919
CaiI	CAGNNNCTG	1 cut(s)	520
CciI	TCATGA	2 cut(s)	235, 982
CfoI	GCGC	1 cut(s)	917
Cfr13I	GGNCC	3 cut(s)	626, 707, 948
Csp6I	GTAC	2 cut(s)	824, 1060
CviAII	CATG	8 cut(s)	42, 193, 202, 236, 331, 983, 1084, 1266
CviQI	GTAC	2 cut(s)	824, 1060
DdeI	CTNAG	6 cut(s)	116, 173, 447, 630, 911, 942
DpnI	GATC	6 cut(s)	21, 70, 297, 340, 753, 1248
DpnII	GATC	6 cut(s)	19, 68, 295, 338, 751, 1246
EaeI	YGGCCR	1 cut(s)	279
Eam1104I	CTCTTC	2 cut(s)	465, 487
EarI	CTCTTC	2 cut(s)	465, 487
Eco31I	GGTCTC	1 cut(s)	1082
Eco47I	GGWCC	2 cut(s)	707, 948
Eco57I	CTGAAG	1 cut(s)	875
EcoRI	GAATTC	1 cut(s)	1156
EcoRII	CCWGG	3 cut(s)	499, 741, 1237
FaeI	CATG	8 cut(s)	45, 196, 205, 239, 334, 986, 1087, 1269
FaqI	GGGAC	2 cut(s)	522, 961
FatI	CATG	8 cut(s)	41, 192, 201, 235, 330, 982, 1083, 1265
FbaI	TGATCA	2 cut(s)	19, 295
Fnu4HI	GCNGC	6 cut(s)	207, 308, 1207, 1210, 1254, 1257
FokI	GGATG	3 cut(s)	68, 335, 970
Fsp4HI	GCNGC	6 cut(s)	207, 308, 1207, 1210, 1254, 1257
FspBI	CTAG	3 cut(s)	359, 684, 711
GlaI	GCGC	1 cut(s)	916
GluI	GCNGC	6 cut(s)	207, 308, 1207, 1210, 1254, 1257
GsaI	CCCAGC	1 cut(s)	1206
HaeIII	GGCC	4 cut(s)	281, 457, 628, 741
HapII	CCGG	1 cut(s)	1170
HhaI	GCGC	1 cut(s)	917
Hin1II	CATG	8 cut(s)	45, 196, 205, 239, 334, 986, 1087, 1269
Hin6I	GCGC	1 cut(s)	915
HinP1I	GCGC	1 cut(s)	915
HindIII	AAGCTT	1 cut(s)	465
HinfI	GANTC	7 cut(s)	13, 245, 634, 808, 1127, 1145, 1261
HpaII	CCGG	1 cut(s)	1170
HphI	GGTGA	3 cut(s)	346, 559, 1125
Hpy166II	GTNNAC	2 cut(s)	392, 1195
Hpy188I	TCNGA	7 cut(s)	174, 250, 408, 559, 633, 780, 964
Hpy188III	TCNNGA	4 cut(s)	17, 236, 983, 1142
Hpy8I	GTNNAC	2 cut(s)	392, 1195
Hpy99I	CGWCG	1 cut(s)	738
HpyAV	CCTTC	4 cut(s)	55, 444, 571, 1073
HpyCH4III	ACNGT	4 cut(s)	83, 213, 396, 761
HpyCH4IV	ACGT	1 cut(s)	733
HpyCH4V	TGCA	9 cut(s)	209, 254, 310, 381, 525, 658, 814, 1057, 1083
HpyF10VI	GCNNNNNNNGC	6 cut(s)	198, 215, 531, 938, 1215, 1224
HpyF3I	CTNAG	6 cut(s)	116, 173, 447, 630, 911, 942
HpySE526I	ACGT	1 cut(s)	733
Hsp92II	CATG	8 cut(s)	45, 196, 205, 239, 334, 986, 1087, 1269
HspAI	GCGC	1 cut(s)	915
Ksp22I	TGATCA	2 cut(s)	19, 295
Kzo9I	GATC	6 cut(s)	19, 68, 295, 338, 751, 1246
LmnI	GCTCC	1 cut(s)	929
Lsp1109I	GCAGC	5 cut(s)	193, 294, 1218, 1221, 1243
LweI	GCATC	3 cut(s)	241, 368, 860
MaeI	CTAG	3 cut(s)	359, 684, 711
MaeII	ACGT	1 cut(s)	733
MaeIII	GTNAC	8 cut(s)	83, 266, 326, 527, 565, 972, 1042, 1220
MalI	GATC	6 cut(s)	21, 70, 297, 340, 753, 1248
MboI	GATC	6 cut(s)	19, 68, 295, 338, 751, 1246
MboII	GAAGA	7 cut(s)	155, 452, 474, 477, 817, 881, 1122
MfeI	CAATTG	2 cut(s)	123, 382
MhlI	GDGCHC	1 cut(s)	733
MluCI	AATT	7 cut(s)	123, 138, 220, 382, 441, 1002, 1156
MlyI	GAGTC	1 cut(s)	254
MnlI	CCTC	8 cut(s)	46, 466, 468, 507, 639, 729, 731, 1149
MroXI	GAANNNNTTC	2 cut(s)	111, 774
MspA1I	CMGCKG	1 cut(s)	451
MspI	CCGG	1 cut(s)	1170
MspR9I	CCNGG	3 cut(s)	501, 743, 1239
MunI	CAATTG	2 cut(s)	123, 382
MvaI	CCWGG	3 cut(s)	501, 743, 1239
MwoI	GCNNNNNNNGC	6 cut(s)	198, 215, 531, 938, 1215, 1224
NdeII	GATC	6 cut(s)	19, 68, 295, 338, 751, 1246
NlaIII	CATG	8 cut(s)	45, 196, 205, 239, 334, 986, 1087, 1269
NlaIV	GGNNCC	2 cut(s)	949, 1243
NmeAIII	GCCGAG	2 cut(s)	257, 1177
NmuCI	GTSAC	3 cut(s)	565, 972, 1042
PagI	TCATGA	2 cut(s)	235, 982
PdmI	GAANNNNTTC	2 cut(s)	111, 774
PfeI	GAWTC	6 cut(s)	13, 634, 808, 1127, 1145, 1261
PflMI	CCANNNNNTGG	1 cut(s)	193
PkrI	GCNGC	6 cut(s)	208, 309, 1208, 1211, 1255, 1258
PleI	GAGTC	1 cut(s)	253
PpsI	GAGTC	1 cut(s)	253
Psp6I	CCWGG	3 cut(s)	499, 741, 1237
PspFI	CCCAGC	1 cut(s)	1202
PspGI	CCWGG	3 cut(s)	499, 741, 1237
PspN4I	GGNNCC	2 cut(s)	949, 1243
PspPI	GGNCC	3 cut(s)	626, 707, 948
PstNI	CAGNNNCTG	1 cut(s)	520
PvuII	CAGCTG	1 cut(s)	451
RsaI	GTAC	2 cut(s)	825, 1061
RsaNI	GTAC	2 cut(s)	824, 1060
SatI	GCNGC	6 cut(s)	207, 308, 1207, 1210, 1254, 1257
Sau3AI	GATC	6 cut(s)	19, 68, 295, 338, 751, 1246
Sau96I	GGNCC	3 cut(s)	626, 707, 948
SchI	GAGTC	1 cut(s)	254
ScrFI	CCNGG	3 cut(s)	501, 743, 1239
SduI	GDGCHC	1 cut(s)	733
SfaNI	GCATC	3 cut(s)	241, 368, 860
SfcI	CTRYAG	1 cut(s)	933
SinI	GGWCC	2 cut(s)	707, 948
Sse9I	AATT	7 cut(s)	123, 138, 220, 382, 441, 1002, 1156
SsiI	CCGC	2 cut(s)	1136, 1253
SspMI	CTAG	3 cut(s)	359, 684, 711
StyD4I	CCNGG	3 cut(s)	499, 741, 1237
TaaI	ACNGT	4 cut(s)	83, 213, 396, 761
TaiI	ACGT	1 cut(s)	736
TaqI	TCGA	2 cut(s)	736, 873
TaqII	GACCGA	1 cut(s)	1133
TasI	AATT	7 cut(s)	123, 138, 220, 382, 441, 1002, 1156
TauI	GCSGC	1 cut(s)	1256
TfiI	GAWTC	6 cut(s)	13, 634, 808, 1127, 1145, 1261
TscAI	CASTG	1 cut(s)	1183
TseFI	GTSAC	3 cut(s)	565, 972, 1042
TseI	GCWGC	5 cut(s)	206, 307, 1206, 1209, 1256
Tsp45I	GTSAC	3 cut(s)	565, 972, 1042
TspDTI	ATGAA	4 cut(s)	213, 818, 879, 1014
TspGWI	ACGGA	1 cut(s)	960
TspRI	CASTG	1 cut(s)	1183
Van91I	CCANNNNNTGG	1 cut(s)	193
VpaK11BI	GGWCC	2 cut(s)	707, 948
XapI	RAATTY	1 cut(s)	1156
XmnI	GAANNNNTTC	2 cut(s)	111, 774
XspI	CTAG	3 cut(s)	359, 684, 711

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.