Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0012560

Physical Location & Seq

Genomic Coordinates Reverse (-)

18284589 .. 18287921

Gene Structure 3333 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G191100.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1500 bp

ATGGACAACTATCTTAATCAATTTTTCAGTTCCTCTTCATGGTCAGATGTAGATGTGAAGGAGAGATCATCTTGGGGATGTTGTGAATCTGGGCAACCAAATGAAATGCTTCTCAATTCAGCTGGAGTGGATGAGGATGACAACAATAGTTCCCCTACATATTTGACTAATTCAAACCACAGTATGGAGAGCTTGGCTGCTCAAGATGCTTCATCTATTGTTCATGATTTAGAGTCAGATGCACAAGATGATGGTAAAAACTTCAAGCCAAACCTCTCAAATGGAAAGGTGGATGGTAGCTTTAAAGTCGAAAATCCGGGCCTGCAATATGATGTGGATATTGTAACCCCCTGCTCACTTGCTTCTCTGGAGCAGCTGCCTTTGAATGGTAACATGGTGAGAACATCTCTTTCCACCATAGAGCCGGAAAATGTGGTATGCAACAACCGTGAACCATCCATCTTCGAAAGATTCAATGGAGATTTCGAAACCCTTCCTTCGATTTCTCAGTTGTGGCCTCTTCAATCTTATGAGGGTGTTCCTTCTTCTCTTTCTCCTGGTATGGGACAGCACAGAATGTGCAGCTTTGGCTTAAAAGGAGAATATGGGGATAATGGTACTTATGCCATGGCAAACGATCCCAATAACTTGGCTGTTTTAGTCACCACAGAGGGAAAGCAGGACCTACAAAATTATCCTTTGCCTTCTTTTGCTTCTGGGCCTCAGATTACAATGACAATGTCTGGATTGCAGTCCTTACAGCAGGCTACATCAACTACCCCCTCTGCTGAATGTACTGGAACTGGAAAGCCTCGTATGAGGGCACGTCGAGGCCAGGCAACTGATCCACACAGTATTGCTGAAAGGCTTCGGAGAGAAAAAATTGCTGAAAGAATGAAGAACCTGCAAGAACTGGTGCCGAATTCTAACAGGACTGACAAGGCATCCATGCTAGATGAAATCATTGAGTACGTCAAATTCCTTCAGCTCCAAATCAAGGTGCTAAGCATGAGCAGAGTTGGTGCTGCAGGAGCAGTTGTTCCTCTCATCACAGACACTCAACAAGCTAAGGGTGCCAATGGTTCTTCGCTGTTGCCGTCAGTTGGCCAAGTAACTGACATTTCATTCAATGAAATTGCCTTAGAGCAAGTAGTGAGGCTGATGGAATCAGATGTGACCAAGGCAATGCAGCATCTCCAAAGCAAAGGTCTCTGCCTTATGCCAATTGCTCTTGCTGATGCCATATCCACAGAAAAAAAATCATCATCATCACCAGCTCCTGCTTCTGATGATTGGAAGAAAACCGGTTTCAACGATAGCGGCCTTGTTCAAAACAACAGCAGCAGCAGCAGCAACAGCAGCTTGCCTGAGAAATCAAATTCTGTAGGGTTATCTGTCATCTTTCAACACACACACATGGCAAACACTGACCATCTGAATCAAAAGGGTATGCACCAGCGACGGTTCATACTTCATTCATGGCTTGGTTTTGACTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

500

Amino Acids

54.37

Weight (kDa)

5.01

Isoelectric Point (pI)

46.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012560)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g09520 FvH4_1g09520
malus_domestica	MD02G1103800.v1.1
prunus_persica	Prupe.7G191100_v2.0.a1 Prupe.7G191100_v2.0.a1 Prupe.7G191100_v2.0.a1 Prupe.7G191100_v2.0.a1
pyrus_communis	pycom02g08150
rosa_chinensis	RchiOBHm_Chr2g0096091
rosa_laevigata	RLG00000016624
rosa_multiflora	Rmu_sc0005612.1_g000002 Rmu_sc0005996.1_g000005
rosa_roxburghii	Rroxscaffold_2G00145760
rosa_rugosa	Rorug02G0056900
rosa_samantha	Rh2AG103900 Rh2BG106000 Rh2CG107900 Rh2DG106600
rosa_wichuraiana	Rw2G007980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	912
AccB1I	GGYRCC	2 cut(s)	916, 1073
AccB7I	CCANNNNNTGG	1 cut(s)	184
AciI	CCGC	1 cut(s)	1320
AclWI	GGATC	2 cut(s)	632, 839
AcoI	YGGCCR	1 cut(s)	1105
AcsI	RAATTY	3 cut(s)	922, 977, 1378
AcuI	CTGAAG	1 cut(s)	968
AfaI	GTAC	3 cut(s)	619, 796, 971
AfiI	CCNNNNNNNGG	6 cut(s)	39, 184, 386, 563, 997, 1103
AgeI	ACCGGT	1 cut(s)	1304
AgsI	TTSAA	9 cut(s)	174, 265, 385, 475, 524, 1129, 1312, 1331, 1406
AjiI	CACGTC	1 cut(s)	827
AjnI	CCWGG	2 cut(s)	556, 834
AloI	GAACNNNNNNTCC	2 cut(s)	1023, 1055
AluBI	AGCT	9 cut(s)	122, 192, 300, 376, 585, 988, 1067, 1277, 1362
AluI	AGCT	9 cut(s)	122, 192, 300, 376, 585, 988, 1067, 1277, 1362
Alw26I	GTCTC	1 cut(s)	1214
AlwI	GGATC	2 cut(s)	632, 839
AlwNI	CAGNNNCTG	1 cut(s)	1280
AoxI	GGCC	6 cut(s)	319, 515, 719, 832, 1105, 1321
ApoI	RAATTY	3 cut(s)	922, 977, 1378
ArsI	GACNNNNNNTTYG	2 cut(s)	1192, 1224
AsiGI	ACCGGT	1 cut(s)	1304
Asp700I	GAANNNNTTC	3 cut(s)	108, 492, 867
AspS9I	GGNCC	3 cut(s)	319, 682, 719
AsuC2I	CCSGG	1 cut(s)	318
AsuHPI	GGTGA	3 cut(s)	409, 655, 1263
AsuII	TTCGAA	2 cut(s)	465, 486
AvaII	GGWCC	1 cut(s)	682
BaeGI	GKGCMC	1 cut(s)	826
BalI	TGGCCA	1 cut(s)	1107
BanI	GGYRCC	2 cut(s)	916, 1073
BccI	CCATC	6 cut(s)	245, 287, 463, 467, 1156, 1440
BceAI	ACGGC	1 cut(s)	1081
BciT130I	CCWGG	2 cut(s)	558, 836
BcnI	CCSGG	1 cut(s)	318
BcoDI	GTCTC	1 cut(s)	1214
BfaI	CTAG	1 cut(s)	953
BfmI	CTRYAG	2 cut(s)	1026, 1383
BfuAI	ACCTGC	1 cut(s)	912
BlpI	GCTNAGC	1 cut(s)	1004
Bme1390I	CCNGG	3 cut(s)	318, 558, 836
Bme18I	GGWCC	1 cut(s)	682
BmgBI	CACGTC	1 cut(s)	827
BmgT120I	GGNCC	3 cut(s)	319, 682, 719
BmiI	GGNNCC	2 cut(s)	918, 1075
BmrFI	CCNGG	3 cut(s)	318, 558, 836
BmsI	GCATC	5 cut(s)	196, 229, 953, 1201, 1228
BplI	GAGNNNNNCTC	2 cut(s)	391, 423
BpmI	CTGGAG	2 cut(s)	144, 389
Bpu10I	CCTNAGC	1 cut(s)	1068
Bpu1102I	GCTNAGC	1 cut(s)	1004
Bpu14I	TTCGAA	2 cut(s)	465, 486
BpuEI	CTTGAG	1 cut(s)	186
BpuMI	CCSGG	1 cut(s)	318
BsaI	GGTCTC	1 cut(s)	1214
BsaJI	CCNNGG	2 cut(s)	627, 1179
BsaWI	WCCGGW	1 cut(s)	1304
BsaXI	ACNNNNNCTCC	2 cut(s)	1023, 1053
Bsc4I	CCNNNNNNNGG	6 cut(s)	39, 184, 386, 563, 997, 1103
Bse118I	RCCGGY	1 cut(s)	1304
Bse1I	ACTGG	3 cut(s)	802, 808, 918
Bse3DI	GCAATG	1 cut(s)	1191
BseBI	CCWGG	2 cut(s)	558, 836
BseDI	CCNNGG	2 cut(s)	627, 1179
BseGI	GGATG	6 cut(s)	83, 136, 142, 298, 455, 944
BseLI	CCNNNNNNNGG	6 cut(s)	39, 184, 386, 563, 997, 1103
BseMI	GCAATG	1 cut(s)	1191
BseMII	CTCAG	3 cut(s)	521, 737, 1359
BseNI	ACTGG	3 cut(s)	802, 808, 918
BseSI	GKGCMC	1 cut(s)	826
BsgI	GTGCAG	1 cut(s)	601
BshFI	GGCC	6 cut(s)	321, 517, 721, 834, 1107, 1323
BshNI	GGYRCC	2 cut(s)	916, 1073
BshTI	ACCGGT	1 cut(s)	1304
BsiSI	CCGG	3 cut(s)	317, 425, 1305
BslFI	GGGAC	1 cut(s)	579
BslI	CCNNNNNNNGG	6 cut(s)	39, 184, 386, 563, 997, 1103
BsmAI	GTCTC	1 cut(s)	1214
BsmFI	GGGAC	1 cut(s)	579
BsnI	GGCC	6 cut(s)	321, 517, 721, 834, 1107, 1323
Bso31I	GGTCTC	1 cut(s)	1214
Bsp119I	TTCGAA	2 cut(s)	465, 486
Bsp1286I	GDGCHC	1 cut(s)	826
Bsp143I	GATC	3 cut(s)	65, 637, 844
Bsp1720I	GCTNAGC	1 cut(s)	1004
Bsp19I	CCATGG	1 cut(s)	627
BspACI	CCGC	1 cut(s)	1320
BspANI	GGCC	6 cut(s)	321, 517, 721, 834, 1107, 1323
BspCNI	CTCAG	3 cut(s)	520, 736, 1360
BspHI	TCATGA	1 cut(s)	223
BspLI	GGNNCC	2 cut(s)	918, 1075
BspMAI	CTGCAG	1 cut(s)	1030
BspMI	ACCTGC	1 cut(s)	912
BspPI	GGATC	2 cut(s)	632, 839
BspT104I	TTCGAA	2 cut(s)	465, 486
BspT107I	GGYRCC	2 cut(s)	916, 1073
BspTNI	GGTCTC	1 cut(s)	1214
BsrDI	GCAATG	1 cut(s)	1191
BsrFI	RCCGGY	1 cut(s)	1304
BsrI	ACTGG	3 cut(s)	802, 808, 918
BssAI	RCCGGY	1 cut(s)	1304
BssECI	CCNNGG	2 cut(s)	627, 1179
BssMI	GATC	3 cut(s)	65, 637, 844
BssT1I	CCWWGG	2 cut(s)	627, 1179
Bst2UI	CCWGG	2 cut(s)	558, 836
Bst4CI	ACNGT	4 cut(s)	182, 449, 854, 1464
Bst6I	CTCTTC	2 cut(s)	40, 525
BstBI	TTCGAA	2 cut(s)	465, 486
BstC8I	GCNNGC	3 cut(s)	323, 765, 1364
BstDEI	CTNAG	6 cut(s)	507, 723, 1004, 1068, 1141, 1368
BstDSI	CCRYGG	1 cut(s)	627
BstF5I	GGATG	6 cut(s)	83, 136, 142, 298, 455, 944
BstKTI	GATC	3 cut(s)	68, 640, 847
BstMAI	GTCTC	1 cut(s)	1214
BstMBI	GATC	3 cut(s)	65, 637, 844
BstMWI	GCNNNNNNNGC	8 cut(s)	206, 588, 1031, 1073, 1347, 1350, 1356, 1359
BstNI	CCWGG	2 cut(s)	558, 836
BstSCI	CCNGG	3 cut(s)	316, 556, 834
BstSFI	CTRYAG	2 cut(s)	1026, 1383
BstSLI	GKGCMC	1 cut(s)	826
BstXI	CCANNNNNNTGG	1 cut(s)	649
BsuRI	GGCC	6 cut(s)	321, 517, 721, 834, 1107, 1323
BtgI	CCRYGG	1 cut(s)	627
BtrI	CACGTC	1 cut(s)	827
BtsCI	GGATG	6 cut(s)	83, 136, 142, 298, 455, 944
BtsIMutI	CAGTG	1 cut(s)	1425
BveI	ACCTGC	1 cut(s)	912
Cac8I	GCNNGC	3 cut(s)	323, 765, 1364
CaiI	CAGNNNCTG	1 cut(s)	1280
CciI	TCATGA	1 cut(s)	223
Cfr10I	RCCGGY	1 cut(s)	1304
Cfr13I	GGNCC	3 cut(s)	319, 682, 719
Csp6I	GTAC	3 cut(s)	618, 795, 970
CspAI	ACCGGT	1 cut(s)	1304
CviAII	CATG	8 cut(s)	39, 224, 394, 628, 949, 1009, 1417, 1479
CviQI	GTAC	3 cut(s)	618, 795, 970
DdeI	CTNAG	6 cut(s)	507, 723, 1004, 1068, 1141, 1368
DpnI	GATC	3 cut(s)	67, 639, 846
DpnII	GATC	3 cut(s)	65, 637, 844
DraI	TTTAAA	1 cut(s)	304
EaeI	YGGCCR	1 cut(s)	1105
Eam1104I	CTCTTC	2 cut(s)	40, 525
EarI	CTCTTC	2 cut(s)	40, 525
Eco130I	CCWWGG	2 cut(s)	627, 1179
Eco31I	GGTCTC	1 cut(s)	1214
Eco47I	GGWCC	1 cut(s)	682
Eco57I	CTGAAG	1 cut(s)	968
EcoO109I	RGGNCCY	1 cut(s)	682
EcoRI	GAATTC	1 cut(s)	922
EcoRII	CCWGG	2 cut(s)	556, 834
EcoT14I	CCWWGG	2 cut(s)	627, 1179
ErhI	CCWWGG	2 cut(s)	627, 1179
FaeI	CATG	8 cut(s)	42, 227, 397, 631, 952, 1012, 1420, 1482
FaqI	GGGAC	1 cut(s)	579
FatI	CATG	8 cut(s)	38, 223, 393, 627, 948, 1008, 1416, 1478
FokI	GGATG	6 cut(s)	90, 143, 149, 305, 442, 931
FspBI	CTAG	1 cut(s)	953
GsuI	CTGGAG	2 cut(s)	144, 389
HaeIII	GGCC	6 cut(s)	321, 517, 721, 834, 1107, 1323
HapII	CCGG	3 cut(s)	317, 425, 1305
Hin1II	CATG	8 cut(s)	42, 227, 397, 631, 952, 1012, 1420, 1482
HinfI	GANTC	5 cut(s)	86, 233, 471, 1166, 1438
HpaII	CCGG	3 cut(s)	317, 425, 1305
HphI	GGTGA	3 cut(s)	409, 655, 1263
Hpy166II	GTNNAC	1 cut(s)	452
Hpy188I	TCNGA	7 cut(s)	46, 238, 726, 873, 1171, 1288, 1437
Hpy188III	TCNNGA	4 cut(s)	203, 224, 368, 744
Hpy8I	GTNNAC	1 cut(s)	452
Hpy99I	CGWCG	2 cut(s)	831, 1464
HpyAV	CCTTC	6 cut(s)	52, 503, 507, 552, 714, 992
HpyCH4III	ACNGT	4 cut(s)	182, 449, 854, 1464
HpyCH4IV	ACGT	2 cut(s)	826, 972
HpyCH4V	TGCA	9 cut(s)	242, 325, 441, 582, 751, 907, 1028, 1189, 1453
HpyF10VI	GCNNNNNNNGC	8 cut(s)	206, 588, 1031, 1073, 1347, 1350, 1356, 1359
HpyF3I	CTNAG	6 cut(s)	507, 723, 1004, 1068, 1141, 1368
HpySE526I	ACGT	2 cut(s)	826, 972
Hsp92II	CATG	8 cut(s)	42, 227, 397, 631, 952, 1012, 1420, 1482
Kzo9I	GATC	3 cut(s)	65, 637, 844
LmnI	GCTCC	4 cut(s)	370, 993, 1031, 1282
LweI	GCATC	5 cut(s)	196, 229, 953, 1201, 1228
MaeI	CTAG	1 cut(s)	953
MaeII	ACGT	2 cut(s)	826, 972
MaeIII	GTNAC	5 cut(s)	343, 389, 661, 1111, 1174
MalI	GATC	3 cut(s)	67, 639, 846
MboI	GATC	3 cut(s)	65, 637, 844
MboII	GAAGA	7 cut(s)	27, 454, 512, 537, 910, 1077, 1309
MfeI	CAATTG	1 cut(s)	1224
MhlI	GDGCHC	1 cut(s)	826
MlsI	TGGCCA	1 cut(s)	1107
MluNI	TGGCCA	1 cut(s)	1107
MlyI	GAGTC	1 cut(s)	242
Mox20I	TGGCCA	1 cut(s)	1107
MroXI	GAANNNNTTC	3 cut(s)	108, 492, 867
MscI	TGGCCA	1 cut(s)	1107
MseI	TTAA	3 cut(s)	15, 303, 593
MslI	CAYNNNNRTG	1 cut(s)	1415
Msp20I	TGGCCA	1 cut(s)	1107
MspA1I	CMGCKG	2 cut(s)	122, 376
MspI	CCGG	3 cut(s)	317, 425, 1305
MspR9I	CCNGG	3 cut(s)	318, 558, 836
MunI	CAATTG	1 cut(s)	1224
MvaI	CCWGG	2 cut(s)	558, 836
MwoI	GCNNNNNNNGC	8 cut(s)	206, 588, 1031, 1073, 1347, 1350, 1356, 1359
NciI	CCSGG	1 cut(s)	318
NcoI	CCATGG	1 cut(s)	627
NdeII	GATC	3 cut(s)	65, 637, 844
NlaIII	CATG	8 cut(s)	42, 227, 397, 631, 952, 1012, 1420, 1482
NlaIV	GGNNCC	2 cut(s)	918, 1075
NmuCI	GTSAC	2 cut(s)	661, 1174
NspV	TTCGAA	2 cut(s)	465, 486
PagI	TCATGA	1 cut(s)	223
PcsI	WCGNNNNNNNCGW	1 cut(s)	1094
PdmI	GAANNNNTTC	3 cut(s)	108, 492, 867
PfeI	GAWTC	4 cut(s)	86, 471, 1166, 1438
PflFI	GACNNNGTC	1 cut(s)	739
PflMI	CCANNNNNTGG	1 cut(s)	184
PinAI	ACCGGT	1 cut(s)	1304
PleI	GAGTC	1 cut(s)	241
PpsI	GAGTC	1 cut(s)	241
PpuMI	RGGWCCY	1 cut(s)	682
Psp5II	RGGWCCY	1 cut(s)	682
Psp6I	CCWGG	2 cut(s)	556, 834
PspGI	CCWGG	2 cut(s)	556, 834
PspN4I	GGNNCC	2 cut(s)	918, 1075
PspPI	GGNCC	3 cut(s)	319, 682, 719
PspPPI	RGGWCCY	1 cut(s)	682
PstI	CTGCAG	1 cut(s)	1030
PstNI	CAGNNNCTG	1 cut(s)	1280
PsyI	GACNNNGTC	1 cut(s)	739
PvuII	CAGCTG	2 cut(s)	122, 376
RsaI	GTAC	3 cut(s)	619, 796, 971
RsaNI	GTAC	3 cut(s)	618, 795, 970
RseI	CAYNNNNRTG	1 cut(s)	1415
SaqAI	TTAA	3 cut(s)	15, 303, 593
Sau3AI	GATC	3 cut(s)	65, 637, 844
Sau96I	GGNCC	3 cut(s)	319, 682, 719
SchI	GAGTC	1 cut(s)	242
ScrFI	CCNGG	3 cut(s)	318, 558, 836
SduI	GDGCHC	1 cut(s)	826
SfaNI	GCATC	5 cut(s)	196, 229, 953, 1201, 1228
SfcI	CTRYAG	2 cut(s)	1026, 1383
SfuI	TTCGAA	2 cut(s)	465, 486
SinI	GGWCC	1 cut(s)	682
SmiMI	CAYNNNNRTG	1 cut(s)	1415
SmlI	CTYRAG	1 cut(s)	201
SmoI	CTYRAG	1 cut(s)	201
SsiI	CCGC	1 cut(s)	1320
SspMI	CTAG	1 cut(s)	953
StyD4I	CCNGG	3 cut(s)	316, 556, 834
StyI	CCWWGG	2 cut(s)	627, 1179
TaaI	ACNGT	4 cut(s)	182, 449, 854, 1464
TaiI	ACGT	2 cut(s)	829, 975
TaqI	TCGA	5 cut(s)	309, 465, 486, 500, 829
TatI	WGTACW	1 cut(s)	794
TauI	GCSGC	1 cut(s)	1323
TfiI	GAWTC	4 cut(s)	86, 471, 1166, 1438
Tru1I	TTAA	3 cut(s)	15, 303, 593
Tru9I	TTAA	3 cut(s)	15, 303, 593
TscAI	CASTG	1 cut(s)	1432
TseFI	GTSAC	2 cut(s)	661, 1174
Tsp45I	GTSAC	2 cut(s)	661, 1174
TspRI	CASTG	1 cut(s)	1432
Tth111I	GACNNNGTC	1 cut(s)	739
Van91I	CCANNNNNTGG	1 cut(s)	184
VpaK11BI	GGWCC	1 cut(s)	682
XapI	RAATTY	3 cut(s)	922, 977, 1378
XmnI	GAANNNNTTC	3 cut(s)	108, 492, 867
XspI	CTAG	1 cut(s)	953

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.