Rorug02G0056900

protein polyubiquitination

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0012560
Physical Location & Seq
Forward (+)
4404149 .. 4404571
423 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0056900.1

Sequence Viewer

Length: 423 bp
ATGGTGATTCTGCTGCCAAGATATCACAGAGCACAAGTTCCCGTACTACCACCAACTGAGTCTAGAAGATGGAGGCGGGTTCTCTCTGATACTGAAAGTGATGGTTTCGATGATGTGGACTCTCTCTATGGGGAGAGTGAATCAAATGTCAGTTTTGGGCAGTACAAGGTGTCTTTTAGTGATGTAGTATCTTTTAGTGCCTATGGCGGTGATTCCGATGCTTTTGTAGACCTGCACGGTTTCTTGGATACAGAGACTATTATACAAACAGATTATGGAAGAGCTTTTGATAGTGATATTGACATTGATCCAATGCATGCTGGTCTCAACCCATGGAACTCAGATGACCCTGAACAAGATGATGAATATGATGACGATGATGAGGAGGATGAAGAAGATGATGAATTAATGGGAAGAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
IBR zf-C3HC4

Protein Analysis

140

Amino Acids

15.91

Weight (kDa)

4.05

Isoelectric Point (pI)

60.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 240
AccI GTMKAC 1 cut(s) 228
AciI CCGC 2 cut(s) 76, 207
AclWI GGATC 1 cut(s) 302
AfaI GTAC 2 cut(s) 45, 164
AluBI AGCT 1 cut(s) 284
AluI AGCT 1 cut(s) 284
Alw21I GWGCWC 1 cut(s) 34
Alw26I GTCTC 2 cut(s) 248, 329
AlwI GGATC 1 cut(s) 302
ApeKI GCWGC 1 cut(s) 13
AseI ATTAAT 1 cut(s) 407
AsuHPI GGTGA 2 cut(s) 16, 221
Bbv12I GWGCWC 1 cut(s) 34
BccI CCATC 2 cut(s) 63, 95
BciVI GTATCC 1 cut(s) 241
BcoDI GTCTC 2 cut(s) 248, 329
BfaI CTAG 1 cut(s) 63
BfuAI ACCTGC 1 cut(s) 240
BfuI GTATCC 1 cut(s) 241
BisI GCNGC 1 cut(s) 14
BlsI GCNGC 1 cut(s) 15
BmsI GCATC 1 cut(s) 208
BsaI GGTCTC 1 cut(s) 329
BsaJI CCNNGG 1 cut(s) 332
BseDI CCNNGG 1 cut(s) 332
BseGI GGATG 1 cut(s) 394
BseMII CTCAG 2 cut(s) 48, 354
BseRI GAGGAG 1 cut(s) 398
BsgI GTGCAG 1 cut(s) 218
BsiHKAI GWGCWC 1 cut(s) 34
BsmAI GTCTC 2 cut(s) 248, 329
Bso31I GGTCTC 1 cut(s) 329
Bsp1286I GDGCHC 1 cut(s) 34
Bsp143I GATC 1 cut(s) 307
Bsp19I CCATGG 1 cut(s) 332
BspACI CCGC 2 cut(s) 76, 207
BspCNI CTCAG 2 cut(s) 49, 353
BspMI ACCTGC 1 cut(s) 240
BspPI GGATC 1 cut(s) 302
BspQI GCTCTTC 1 cut(s) 274
BspTNI GGTCTC 1 cut(s) 329
BssECI CCNNGG 1 cut(s) 332
BssMI GATC 1 cut(s) 307
BssT1I CCWWGG 1 cut(s) 332
Bst4CI ACNGT 1 cut(s) 239
Bst6I CTCTTC 1 cut(s) 274
BstC8I GCNNGC 1 cut(s) 318
BstDEI CTNAG 2 cut(s) 57, 340
BstDSI CCRYGG 1 cut(s) 332
BstF5I GGATG 1 cut(s) 394
BstKTI GATC 1 cut(s) 310
BstMAI GTCTC 2 cut(s) 248, 329
BstMBI GATC 1 cut(s) 307
BstNSI RCATGY 1 cut(s) 320
BsuI GTATCC 1 cut(s) 241
BtgI CCRYGG 1 cut(s) 332
BtsCI GGATG 1 cut(s) 394
BveI ACCTGC 1 cut(s) 240
Cac8I GCNNGC 1 cut(s) 318
Csp6I GTAC 2 cut(s) 44, 163
CviAII CATG 2 cut(s) 317, 333
CviJI RGCY 1 cut(s) 284
CviKI_1 RGCY 1 cut(s) 284
CviQI GTAC 2 cut(s) 44, 163
DdeI CTNAG 2 cut(s) 57, 340
DpnI GATC 1 cut(s) 309
DpnII GATC 1 cut(s) 307
Eam1104I CTCTTC 1 cut(s) 274
EarI CTCTTC 1 cut(s) 274
Eco130I CCWWGG 1 cut(s) 332
Eco31I GGTCTC 1 cut(s) 329
Eco32I GATATC 1 cut(s) 23
EcoRV GATATC 1 cut(s) 23
EcoT14I CCWWGG 1 cut(s) 332
EcoT22I ATGCAT 1 cut(s) 318
ErhI CCWWGG 1 cut(s) 332
FaeI CATG 2 cut(s) 320, 336
FaiI YATR 7 cut(s) 129, 204, 263, 276, 318, 334, 369
FatI CATG 2 cut(s) 316, 332
FauI CCCGC 1 cut(s) 69
FblI GTMKAC 1 cut(s) 228
Fnu4HI GCNGC 1 cut(s) 14
FokI GGATG 1 cut(s) 401
Fsp4HI GCNGC 1 cut(s) 14
FspBI CTAG 1 cut(s) 63
GluI GCNGC 1 cut(s) 14
Hin1II CATG 2 cut(s) 320, 336
HinfI GANTC 5 cut(s) 7, 59, 119, 140, 212
HphI GGTGA 2 cut(s) 16, 221
Hpy166II GTNNAC 2 cut(s) 118, 229
Hpy188I TCNGA 3 cut(s) 88, 217, 343
Hpy188III TCNNGA 1 cut(s) 63
Hpy8I GTNNAC 2 cut(s) 118, 229
HpyCH4III ACNGT 1 cut(s) 239
HpyCH4V TGCA 2 cut(s) 235, 316
HpyF3I CTNAG 2 cut(s) 57, 340
Hsp92II CATG 2 cut(s) 320, 336
Kzo9I GATC 1 cut(s) 307
LguI GCTCTTC 1 cut(s) 274
LpnPI CCDG 3 cut(s) 245, 306, 363
LweI GCATC 1 cut(s) 208
MaeI CTAG 1 cut(s) 63
MalI GATC 1 cut(s) 309
MboI GATC 1 cut(s) 307
MboII GAAGA 4 cut(s) 78, 291, 404, 407
MhlI GDGCHC 1 cut(s) 34
MluCI AATT 1 cut(s) 404
MlyI GAGTC 2 cut(s) 68, 113
MnlI CCTC 3 cut(s) 66, 376, 379
Mph1103I ATGCAT 1 cut(s) 318
MseI TTAA 1 cut(s) 407
NcoI CCATGG 1 cut(s) 332
NdeII GATC 1 cut(s) 307
NlaIII CATG 2 cut(s) 320, 336
NsiI ATGCAT 1 cut(s) 318
NspI RCATGY 1 cut(s) 320
PaeI GCATGC 1 cut(s) 320
PciSI GCTCTTC 1 cut(s) 274
PfeI GAWTC 3 cut(s) 7, 140, 212
PkrI GCNGC 1 cut(s) 15
PleI GAGTC 2 cut(s) 67, 113
PpsI GAGTC 2 cut(s) 67, 113
PshBI ATTAAT 1 cut(s) 407
RsaI GTAC 2 cut(s) 45, 164
RsaNI GTAC 2 cut(s) 44, 163
SapI GCTCTTC 1 cut(s) 274
SaqAI TTAA 1 cut(s) 407
SatI GCNGC 1 cut(s) 14
Sau3AI GATC 1 cut(s) 307
SchI GAGTC 2 cut(s) 68, 113
SduI GDGCHC 1 cut(s) 34
SetI ASST 3 cut(s) 171, 234, 286
SfaNI GCATC 1 cut(s) 208
SphI GCATGC 1 cut(s) 320
Sse9I AATT 1 cut(s) 404
SsiI CCGC 2 cut(s) 76, 207
SspMI CTAG 1 cut(s) 63
StyI CCWWGG 1 cut(s) 332
TaaI ACNGT 1 cut(s) 239
TaqI TCGA 1 cut(s) 108
TasI AATT 1 cut(s) 404
TatI WGTACW 1 cut(s) 162
TfiI GAWTC 3 cut(s) 7, 140, 212
Tru1I TTAA 1 cut(s) 407
Tru9I TTAA 1 cut(s) 407
TseI GCWGC 1 cut(s) 13
TspDTI ATGAA 3 cut(s) 378, 405, 417
VspI ATTAAT 1 cut(s) 407
XbaI TCTAGA 1 cut(s) 62
XceI RCATGY 1 cut(s) 320
XmiI GTMKAC 1 cut(s) 228
XspI CTAG 1 cut(s) 63
Zsp2I ATGCAT 1 cut(s) 318
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.