Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0012560

Physical Location & Seq

Genomic Coordinates Reverse (-)

83664328 .. 83668428

Gene Structure 4101 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00145760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1383 bp

ATGAACGAGGAGGAGGAGGAGGAGGCTAGGAATAGGAAGAATGAGGGAGAAGGAAGGTGGGTAAGTGAAGGCCGCATAAATCAGCAGAGGGAGCTCTTCACAACATTGTTGTTGATGATGGACGAGATTCTTGATCATTTTTTCAGTTCCTCATCATGGACAGATGTGGATGTAAAGGAAAGATCATCTTTGGACTGTTACGAAAATCCACCAACAAACGAAATGTTTCTCAGTTCACTTGGAGTAATTAAAGATGACAGCAATAACTCTGCTACAAATCTGAGCAACTCAAACCACAGCATGGAGAGCATGGCTGCACAGTCTGCTAATTCATCTGTTGCTCATGATTTTGAGTCTGATGCACAAGACAATTGCAACAATTGCGCGGCCAACTTCTCGATTAATGATCAAATGGGCCTGCAATATGATTTGGATGGTAACATGGCGAAATCAACATCTGTTTCGTCCCTAGAGCCACAAAATGTGGGGGGCAATTGTTGTGAACAGTCTGTCTTTCAGAGACTCAATGGAGATATTGAAACCCTTTCTCCAATTTCTCAGCTGTGGCCTCTTCAAGCTTATGAGGGTGTCTCTTCTCCTCTTTGTCCTCCTGGTATGGGACAACAGAAGCTGTGCAGCTTTGGTAGTAATGATATTTATGAGTTATCTGATATACTCACCACAGAGAAGGTAAGACAGGAGATAGGAAATTATCCTTTGCCCTCTTTTGCTTCTGGGCCTCAGATTCCAATGGCAATGACTGGATTGCAGTCTTTCCCACAGATGATTGGTCATGAGGTTTTTATATTCGATCACTTGCAGACTACATCAACTAACCCCTCTGCTGAATGTACTGGACCTAGAAAGCCTCGTATGAGGGCTCGCCGAGGCCAGGCAACTGATCCACACAGTATTGCTGAAAGGCTTCGGAGAGAGAAAATTGCTGACAGAATGAAGAATCTGCAAGAACTTGTACCAAAGTCTAACAAGGTTCTAAGCGCACGCAGATTGGGAGTTACAGGGGCAGTTATCTTGGATAATCGGGCTAAGGGGACCAATGGGATTTCACAGTCTCCATCACTTGGTCAAGTAGCTCATGACATTTCTTTCAATGAAATTGCTTTGGAACAAGTACTGAAACTGATGGAAACCGATGTAAGCAAGGCAATGCATTATCTCCAAAGCAAAGGTCTCTGCATGATGCCCGTCGCTCTTGCCAATGCCATATTGGCCGAGAAGGAATCATCACCGGCTCCTGATTCTGCCGAGAATTTGAAGAACTCATGTTTTACTGATGATGGTTTTGTTCACAACCCCAGCAGCAGCAGCAGCAGTAACAGCAACACCTTGCCTGGCACCCACAAAACGGCTGTCAATCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR zf-C3HC4

Protein Analysis

460

Amino Acids

50.41

Weight (kDa)

4.91

Isoelectric Point (pI)

56.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012560)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g09520 FvH4_1g09520
malus_domestica	MD02G1103800.v1.1
prunus_persica	Prupe.7G191100_v2.0.a1 Prupe.7G191100_v2.0.a1 Prupe.7G191100_v2.0.a1 Prupe.7G191100_v2.0.a1
pyrus_communis	pycom02g08150
rosa_chinensis	RchiOBHm_Chr2g0096091
rosa_laevigata	RLG00000016624
rosa_multiflora	Rmu_sc0005612.1_g000002 Rmu_sc0005996.1_g000005
rosa_roxburghii	Rroxscaffold_2G00145760
rosa_rugosa	Rorug02G0056900
rosa_samantha	Rh2AG103900 Rh2BG106000 Rh2CG107900 Rh2DG106600
rosa_wichuraiana	Rw2G007980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1355
AccB7I	CCANNNNNTGG	2 cut(s)	301, 1082
AccII	CGCG	1 cut(s)	386
AciI	CCGC	2 cut(s)	73, 386
AclWI	GGATC	1 cut(s)	896
AcoI	YGGCCR	2 cut(s)	387, 1230
AcsI	RAATTY	1 cut(s)	1270
AfaI	GTAC	3 cut(s)	853, 975, 1134
AfiI	CCNNNNNNNGG	6 cut(s)	156, 301, 617, 892, 1082, 1366
AgsI	TTSAA	4 cut(s)	539, 575, 1111, 1276
AjnI	CCWGG	3 cut(s)	610, 891, 1351
AluBI	AGCT	6 cut(s)	94, 562, 578, 631, 639, 1094
AluI	AGCT	6 cut(s)	94, 562, 578, 631, 639, 1094
Alw21I	GWGCWC	1 cut(s)	96
Alw26I	GTCTC	4 cut(s)	514, 595, 1077, 1196
AlwI	GGATC	1 cut(s)	896
AlwNI	CAGNNNCTG	1 cut(s)	631
AoxI	GGCC	7 cut(s)	70, 387, 415, 566, 737, 889, 1230
ApeKI	GCWGC	6 cut(s)	314, 636, 1320, 1323, 1326, 1329
ApoI	RAATTY	1 cut(s)	1270
ArsI	GACNNNNNNTTYG	3 cut(s)	1174, 1206, 1356
AseI	ATTAAT	1 cut(s)	402
Asp700I	GAANNNNTTC	2 cut(s)	225, 924
AspLEI	GCGC	2 cut(s)	386, 1001
AspS9I	GGNCC	4 cut(s)	415, 737, 857, 1053
AsuHPI	GGTGA	2 cut(s)	670, 1239
AvaII	GGWCC	2 cut(s)	857, 1053
BanI	GGYRCC	1 cut(s)	1355
BanII	GRGCYC	2 cut(s)	96, 883
Bbv12I	GWGCWC	1 cut(s)	96
BbvI	GCAGC	6 cut(s)	301, 648, 1332, 1335, 1338, 1341
BccI	CCATC	5 cut(s)	112, 428, 1084, 1138, 1292
BciT130I	CCWGG	3 cut(s)	612, 893, 1353
BclI	TGATCA	2 cut(s)	133, 406
BcoDI	GTCTC	4 cut(s)	514, 595, 1077, 1196
BfaI	CTAG	3 cut(s)	27, 470, 861
BglI	GCCNNNNNGGC	1 cut(s)	1229
BisI	GCNGC	8 cut(s)	73, 315, 387, 637, 1321, 1324, 1327, 1330
BlsI	GCNGC	8 cut(s)	74, 316, 388, 638, 1322, 1325, 1328, 1331
BmcAI	AGTACT	1 cut(s)	1134
Bme1390I	CCNGG	3 cut(s)	612, 893, 1353
Bme18I	GGWCC	2 cut(s)	857, 1053
BmgT120I	GGNCC	4 cut(s)	415, 737, 857, 1053
BmiI	GGNNCC	3 cut(s)	1054, 1254, 1357
BmrFI	CCNGG	3 cut(s)	612, 893, 1353
BmsI	GCATC	2 cut(s)	349, 1191
BplI	GAGNNNNNCTC	2 cut(s)	575, 607
Bpu10I	CCTNAGC	1 cut(s)	1047
BsaI	GGTCTC	1 cut(s)	1196
BsaJI	CCNNGG	1 cut(s)	886
BsaXI	ACNNNNNCTCC	2 cut(s)	532, 562
Bsc4I	CCNNNNNNNGG	6 cut(s)	156, 301, 617, 892, 1082, 1366
Bse118I	RCCGGY	1 cut(s)	1249
Bse1I	ACTGG	2 cut(s)	766, 859
Bse3DI	GCAATG	2 cut(s)	762, 1173
BseBI	CCWGG	3 cut(s)	612, 893, 1353
BseDI	CCNNGG	1 cut(s)	886
BseGI	GGATG	2 cut(s)	175, 439
BseLI	CCNNNNNNNGG	6 cut(s)	156, 301, 617, 892, 1082, 1366
BseMI	GCAATG	2 cut(s)	762, 1173
BseMII	CTCAG	4 cut(s)	244, 272, 572, 755
BseNI	ACTGG	2 cut(s)	766, 859
BseRI	GAGGAG	6 cut(s)	23, 26, 29, 32, 35, 588
BseXI	GCAGC	6 cut(s)	301, 648, 1332, 1335, 1338, 1341
BseYI	CCCAGC	1 cut(s)	1316
BsgI	GTGCAG	2 cut(s)	300, 655
Bsh1236I	CGCG	1 cut(s)	386
BshFI	GGCC	7 cut(s)	72, 389, 417, 568, 739, 891, 1232
BshNI	GGYRCC	1 cut(s)	1355
BsiHKAI	GWGCWC	1 cut(s)	96
BsiSI	CCGG	1 cut(s)	1250
BslFI	GGGAC	3 cut(s)	451, 633, 1066
BslI	CCNNNNNNNGG	6 cut(s)	156, 301, 617, 892, 1082, 1366
BsmAI	GTCTC	4 cut(s)	514, 595, 1077, 1196
BsmFI	GGGAC	3 cut(s)	451, 633, 1066
BsnI	GGCC	7 cut(s)	72, 389, 417, 568, 739, 891, 1232
Bso31I	GGTCTC	1 cut(s)	1196
Bsp1286I	GDGCHC	2 cut(s)	96, 883
Bsp143I	GATC	5 cut(s)	133, 182, 406, 811, 901
BspACI	CCGC	2 cut(s)	73, 386
BspANI	GGCC	7 cut(s)	72, 389, 417, 568, 739, 891, 1232
BspCNI	CTCAG	4 cut(s)	243, 273, 571, 754
BspFNI	CGCG	1 cut(s)	386
BspHI	TCATGA	3 cut(s)	343, 793, 1096
BspLI	GGNNCC	3 cut(s)	1054, 1254, 1357
BspPI	GGATC	1 cut(s)	896
BspQI	GCTCTTC	1 cut(s)	101
BspT107I	GGYRCC	1 cut(s)	1355
BspTNI	GGTCTC	1 cut(s)	1196
BsrDI	GCAATG	2 cut(s)	762, 1173
BsrFI	RCCGGY	1 cut(s)	1249
BsrI	ACTGG	2 cut(s)	766, 859
BssAI	RCCGGY	1 cut(s)	1249
BssECI	CCNNGG	1 cut(s)	886
BssMI	GATC	5 cut(s)	133, 182, 406, 811, 901
Bst2UI	CCWGG	3 cut(s)	612, 893, 1353
Bst4CI	ACNGT	5 cut(s)	197, 321, 507, 911, 1071
Bst6I	CTCTTC	3 cut(s)	101, 576, 598
BstAPI	GCANNNNNTGC	2 cut(s)	323, 381
BstC8I	GCNNGC	3 cut(s)	419, 883, 1003
BstDEI	CTNAG	6 cut(s)	230, 281, 558, 741, 995, 1047
BstF5I	GGATG	2 cut(s)	175, 439
BstFNI	CGCG	1 cut(s)	386
BstHHI	GCGC	2 cut(s)	386, 1001
BstKTI	GATC	5 cut(s)	136, 185, 409, 814, 904
BstMAI	GTCTC	4 cut(s)	514, 595, 1077, 1196
BstMBI	GATC	5 cut(s)	133, 182, 406, 811, 901
BstMWI	GCNNNNNNNGC	8 cut(s)	91, 306, 323, 381, 1229, 1326, 1329, 1338
BstNI	CCWGG	3 cut(s)	612, 893, 1353
BstSCI	CCNGG	3 cut(s)	610, 891, 1351
BstUI	CGCG	1 cut(s)	386
BstV1I	GCAGC	6 cut(s)	301, 648, 1332, 1335, 1338, 1341
BsuRI	GGCC	7 cut(s)	72, 389, 417, 568, 739, 891, 1232
BtsCI	GGATG	2 cut(s)	175, 439
Cac8I	GCNNGC	3 cut(s)	419, 883, 1003
CaiI	CAGNNNCTG	1 cut(s)	631
CciI	TCATGA	3 cut(s)	343, 793, 1096
CfoI	GCGC	2 cut(s)	386, 1001
Cfr10I	RCCGGY	1 cut(s)	1249
Cfr13I	GGNCC	4 cut(s)	415, 737, 857, 1053
Csp6I	GTAC	3 cut(s)	852, 974, 1133
CviQI	GTAC	3 cut(s)	852, 974, 1133
DdeI	CTNAG	6 cut(s)	230, 281, 558, 741, 995, 1047
DpnI	GATC	5 cut(s)	135, 184, 408, 813, 903
DpnII	GATC	5 cut(s)	133, 182, 406, 811, 901
EaeI	YGGCCR	2 cut(s)	387, 1230
Eam1104I	CTCTTC	3 cut(s)	101, 576, 598
EarI	CTCTTC	3 cut(s)	101, 576, 598
Ecl136II	GAGCTC	1 cut(s)	94
Eco24I	GRGCYC	2 cut(s)	96, 883
Eco31I	GGTCTC	1 cut(s)	1196
Eco47I	GGWCC	2 cut(s)	857, 1053
Eco53kI	GAGCTC	1 cut(s)	94
EcoICRI	GAGCTC	1 cut(s)	94
EcoRII	CCWGG	3 cut(s)	610, 891, 1351
EcoT22I	ATGCAT	1 cut(s)	1173
EcoT38I	GRGCYC	2 cut(s)	96, 883
FalI	AAGNNNNNCTT	2 cut(s)	172, 204
FaqI	GGGAC	3 cut(s)	451, 633, 1066
FbaI	TGATCA	2 cut(s)	133, 406
Fnu4HI	GCNGC	8 cut(s)	73, 315, 387, 637, 1321, 1324, 1327, 1330
FokI	GGATG	2 cut(s)	182, 446
FriOI	GRGCYC	2 cut(s)	96, 883
Fsp4HI	GCNGC	8 cut(s)	73, 315, 387, 637, 1321, 1324, 1327, 1330
FspBI	CTAG	3 cut(s)	27, 470, 861
GlaI	GCGC	2 cut(s)	385, 1000
GluI	GCNGC	8 cut(s)	73, 315, 387, 637, 1321, 1324, 1327, 1330
GsaI	CCCAGC	1 cut(s)	1320
HaeIII	GGCC	7 cut(s)	72, 389, 417, 568, 739, 891, 1232
HapII	CCGG	1 cut(s)	1250
HhaI	GCGC	2 cut(s)	386, 1001
Hin6I	GCGC	2 cut(s)	384, 999
HinP1I	GCGC	2 cut(s)	384, 999
HindIII	AAGCTT	1 cut(s)	576
HinfI	GANTC	7 cut(s)	127, 353, 522, 745, 958, 1241, 1259
HpaII	CCGG	1 cut(s)	1250
HphI	GGTGA	2 cut(s)	670, 1239
Hpy166II	GTNNAC	3 cut(s)	236, 503, 1309
Hpy188I	TCNGA	6 cut(s)	282, 358, 519, 670, 744, 930
Hpy188III	TCNNGA	6 cut(s)	131, 344, 397, 794, 1097, 1256
Hpy8I	GTNNAC	3 cut(s)	236, 503, 1309
Hpy99I	CGWCG	1 cut(s)	1211
HpyAV	CCTTC	5 cut(s)	44, 48, 62, 682, 1231
HpyCH4III	ACNGT	5 cut(s)	197, 321, 507, 911, 1071
HpyF10VI	GCNNNNNNNGC	8 cut(s)	91, 306, 323, 381, 1229, 1326, 1329, 1338
HpyF3I	CTNAG	6 cut(s)	230, 281, 558, 741, 995, 1047
HspAI	GCGC	2 cut(s)	384, 999
Ksp22I	TGATCA	2 cut(s)	133, 406
Kzo9I	GATC	5 cut(s)	133, 182, 406, 811, 901
LguI	GCTCTTC	1 cut(s)	101
LmnI	GCTCC	2 cut(s)	91, 1258
Lsp1109I	GCAGC	6 cut(s)	301, 648, 1332, 1335, 1338, 1341
LweI	GCATC	2 cut(s)	349, 1191
MaeI	CTAG	3 cut(s)	27, 470, 861
MaeIII	GTNAC	4 cut(s)	197, 437, 1015, 1334
MalI	GATC	5 cut(s)	135, 184, 408, 813, 903
MboI	GATC	5 cut(s)	133, 182, 406, 811, 901
MboII	GAAGA	6 cut(s)	49, 88, 563, 585, 967, 1288
MfeI	CAATTG	3 cut(s)	370, 379, 493
MhlI	GDGCHC	2 cut(s)	96, 883
MlyI	GAGTC	2 cut(s)	362, 516
Mph1103I	ATGCAT	1 cut(s)	1173
MroXI	GAANNNNTTC	2 cut(s)	225, 924
MseI	TTAA	2 cut(s)	249, 402
MspA1I	CMGCKG	1 cut(s)	562
MspI	CCGG	1 cut(s)	1250
MspR9I	CCNGG	3 cut(s)	612, 893, 1353
MunI	CAATTG	3 cut(s)	370, 379, 493
MvaI	CCWGG	3 cut(s)	612, 893, 1353
MvnI	CGCG	1 cut(s)	386
MwoI	GCNNNNNNNGC	8 cut(s)	91, 306, 323, 381, 1229, 1326, 1329, 1338
NdeII	GATC	5 cut(s)	133, 182, 406, 811, 901
NlaIV	GGNNCC	3 cut(s)	1054, 1254, 1357
NmeAIII	GCCGAG	3 cut(s)	911, 1258, 1291
NsiI	ATGCAT	1 cut(s)	1173
PagI	TCATGA	3 cut(s)	343, 793, 1096
PciSI	GCTCTTC	1 cut(s)	101
PdmI	GAANNNNTTC	2 cut(s)	225, 924
PfeI	GAWTC	5 cut(s)	127, 745, 958, 1241, 1259
PflMI	CCANNNNNTGG	2 cut(s)	301, 1082
PkrI	GCNGC	8 cut(s)	74, 316, 388, 638, 1322, 1325, 1328, 1331
PleI	GAGTC	2 cut(s)	361, 516
PpsI	GAGTC	2 cut(s)	361, 516
PshBI	ATTAAT	1 cut(s)	402
Psp124BI	GAGCTC	1 cut(s)	96
Psp6I	CCWGG	3 cut(s)	610, 891, 1351
PspFI	CCCAGC	1 cut(s)	1316
PspGI	CCWGG	3 cut(s)	610, 891, 1351
PspN4I	GGNNCC	3 cut(s)	1054, 1254, 1357
PspPI	GGNCC	4 cut(s)	415, 737, 857, 1053
PstNI	CAGNNNCTG	1 cut(s)	631
PvuII	CAGCTG	1 cut(s)	562
RsaI	GTAC	3 cut(s)	853, 975, 1134
RsaNI	GTAC	3 cut(s)	852, 974, 1133
SacI	GAGCTC	1 cut(s)	96
SapI	GCTCTTC	1 cut(s)	101
SaqAI	TTAA	2 cut(s)	249, 402
SatI	GCNGC	8 cut(s)	73, 315, 387, 637, 1321, 1324, 1327, 1330
Sau3AI	GATC	5 cut(s)	133, 182, 406, 811, 901
Sau96I	GGNCC	4 cut(s)	415, 737, 857, 1053
ScaI	AGTACT	1 cut(s)	1134
SchI	GAGTC	2 cut(s)	362, 516
ScrFI	CCNGG	3 cut(s)	612, 893, 1353
SduI	GDGCHC	2 cut(s)	96, 883
SfaNI	GCATC	2 cut(s)	349, 1191
SinI	GGWCC	2 cut(s)	857, 1053
SsiI	CCGC	2 cut(s)	73, 386
SspMI	CTAG	3 cut(s)	27, 470, 861
SstI	GAGCTC	1 cut(s)	96
StyD4I	CCNGG	3 cut(s)	610, 891, 1351
TaaI	ACNGT	5 cut(s)	197, 321, 507, 911, 1071
TaqI	TCGA	2 cut(s)	398, 810
TatI	WGTACW	2 cut(s)	851, 1132
TauI	GCSGC	2 cut(s)	75, 389
TfiI	GAWTC	5 cut(s)	127, 745, 958, 1241, 1259
Tru1I	TTAA	2 cut(s)	249, 402
Tru9I	TTAA	2 cut(s)	249, 402
TseI	GCWGC	6 cut(s)	314, 636, 1320, 1323, 1326, 1329
TspDTI	ATGAA	4 cut(s)	17, 321, 968, 1128
Van91I	CCANNNNNTGG	2 cut(s)	301, 1082
VpaK11BI	GGWCC	2 cut(s)	857, 1053
VspI	ATTAAT	1 cut(s)	402
XapI	RAATTY	1 cut(s)	1270
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1225
XmnI	GAANNNNTTC	2 cut(s)	225, 924
XspI	CTAG	3 cut(s)	27, 470, 861
ZrmI	AGTACT	1 cut(s)	1134
Zsp2I	ATGCAT	1 cut(s)	1173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.