Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0012560

Physical Location & Seq

Genomic Coordinates Forward (+)

8968041 .. 8969965

Gene Structure 1925 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG103900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGGACGAGATTCTTGATCATTTTTTCAGTTCCTCATCATGGACAGATGTGGATGTAAAGGAAAGATCATCTTTGGACTGTTACGAAAATCCACCAACAAACGAAATGTTTCTCAGTTCACTTGGAGTAATTGAAGATGACAGCAATAACTCTGCTACAAATCTGAGCAACTCAAACCACAGCATGGAGAGCATGGCTGCACAGTCTGCTAATTCATCTGTTGCTCATGATTTTGAGTCTGATGCACAAGACAATGGCAACAATTGCGCGGCCAACTTCTCGATCAATGATCAAATGGGCCTGCAATATGATTTGGATGGTAACATGGCGAGATCAACATCTGTTTCGTCCCTAGAGCCACAAAATGTGGGAGGCAATTGTTGTGAACAGTCTGTCTTTCAGAGACTCAATGGAGATATTGAAACCCTTTCTCCAATTTCTCAGCTGTGGCCTCTTCAAGCTTATGAGGGTTTCTCTTCTCCTCTTTGTCCTCCTGGTATGGGACAACAGAAGCTGTGCAGCTTTGGTAGTAATGATATTTATGAGTTATCTGATTTAGTCACCACAGAGAAGGTAAGCCAGGAGATGGGAAATTATCCTATCCCTTCTTTTGCTTCTGGGCCTCAGATTCCAATGGCAATGACTGGATTGCAGTCTTTCCCACAGACTACATCAACTAACCCCTCTGCTGAATGTACTGGACCTAGAAAGCCTCGTATGAGGGCACGCCGAGGCCAGGCAACTGATCCACACAGTATTGCTGAAAGGCTTCGGAGAGAGAAAATTGCTGACAGAATGAAGAATCTGCAAGAACTTGTACCAAAGTCTAACAAGACTGACAAGGCATCTATGCTTGATGAAATCATCGAGTATGTCAAGTTTCTTCAGCAACAACTCAAGGTTCTAAGCGCACGCAGATTGGGAGCTACAGGGGCAGTTGTCTTGGATAATCAGGCTAAGGTAACAATAACACAAGTTGGACAGAGTCTATTTGATAATGTGATCCATGTTTCTTCACTTGATACTCTTACAGCTATGTTGCTTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR zf-C3HC4

Protein Analysis

349

Amino Acids

38.23

Weight (kDa)

4.64

Isoelectric Point (pI)

47.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	251 - 296	2.6e-10	Helix-loop-helix DNA-binding domain
bHLH_SAC51	PF23173	255 - 301	5.4e-07	Transcription factor SAC51 bHLH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012560)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g09520 FvH4_1g09520
malus_domestica	MD02G1103800.v1.1
prunus_persica	Prupe.7G191100_v2.0.a1 Prupe.7G191100_v2.0.a1 Prupe.7G191100_v2.0.a1 Prupe.7G191100_v2.0.a1
pyrus_communis	pycom02g08150
rosa_chinensis	RchiOBHm_Chr2g0096091
rosa_laevigata	RLG00000016624
rosa_multiflora	Rmu_sc0005612.1_g000002 Rmu_sc0005996.1_g000005
rosa_roxburghii	Rroxscaffold_2G00145760
rosa_rugosa	Rorug02G0056900
rosa_samantha	Rh2AG103900 Rh2BG106000 Rh2CG107900 Rh2DG106600
rosa_wichuraiana	Rw2G007980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	184, 586
AccII	CGCG	1 cut(s)	269
AciI	CCGC	1 cut(s)	269
AclWI	GGATC	2 cut(s)	740, 997
AcoI	YGGCCR	1 cut(s)	270
AcuI	CTGAAG	1 cut(s)	869
AfaI	GTAC	2 cut(s)	697, 819
AfiI	CCNNNNNNNGG	5 cut(s)	39, 184, 500, 586, 736
AgsI	TTSAA	3 cut(s)	134, 422, 458
AjnI	CCWGG	3 cut(s)	493, 579, 735
AluBI	AGCT	6 cut(s)	445, 461, 514, 522, 926, 1034
AluI	AGCT	6 cut(s)	445, 461, 514, 522, 926, 1034
Alw26I	GTCTC	1 cut(s)	397
AlwI	GGATC	2 cut(s)	740, 997
AlwNI	CAGNNNCTG	1 cut(s)	514
AoxI	GGCC	5 cut(s)	270, 298, 449, 620, 733
ApeKI	GCWGC	2 cut(s)	197, 519
Asp700I	GAANNNNTTC	2 cut(s)	108, 768
AspLEI	GCGC	2 cut(s)	269, 911
AspS9I	GGNCC	3 cut(s)	298, 620, 701
AsuHPI	GGTGA	1 cut(s)	553
AvaII	GGWCC	1 cut(s)	701
BaeGI	GKGCMC	1 cut(s)	727
BbvI	GCAGC	2 cut(s)	184, 531
BccI	CCATC	2 cut(s)	311, 580
BciT130I	CCWGG	3 cut(s)	495, 581, 737
BclI	TGATCA	2 cut(s)	16, 289
BcoDI	GTCTC	1 cut(s)	397
BfaI	CTAG	2 cut(s)	353, 705
BfmI	CTRYAG	1 cut(s)	927
BisI	GCNGC	3 cut(s)	198, 270, 520
BlsI	GCNGC	3 cut(s)	199, 271, 521
Bme1390I	CCNGG	3 cut(s)	495, 581, 737
Bme18I	GGWCC	1 cut(s)	701
BmgT120I	GGNCC	3 cut(s)	298, 620, 701
BmrFI	CCNGG	3 cut(s)	495, 581, 737
BmsI	GCATC	2 cut(s)	232, 854
BplI	GAGNNNNNCTC	2 cut(s)	458, 490
Bpu10I	CCTNAGC	1 cut(s)	957
BpuEI	CTTGAG	1 cut(s)	881
BsaBI	GATNNNNATC	1 cut(s)	337
BsaJI	CCNNGG	1 cut(s)	730
BsaXI	ACNNNNNCTCC	2 cut(s)	415, 445
Bsc4I	CCNNNNNNNGG	5 cut(s)	39, 184, 500, 586, 736
Bse1I	ACTGG	2 cut(s)	649, 703
Bse3DI	GCAATG	1 cut(s)	645
Bse8I	GATNNNNATC	1 cut(s)	337
BseBI	CCWGG	3 cut(s)	495, 581, 737
BseDI	CCNNGG	1 cut(s)	730
BseGI	GGATG	2 cut(s)	58, 322
BseJI	GATNNNNATC	1 cut(s)	337
BseLI	CCNNNNNNNGG	5 cut(s)	39, 184, 500, 586, 736
BseMI	GCAATG	1 cut(s)	645
BseMII	CTCAG	4 cut(s)	127, 155, 455, 638
BseNI	ACTGG	2 cut(s)	649, 703
BseRI	GAGGAG	1 cut(s)	471
BseSI	GKGCMC	1 cut(s)	727
BseXI	GCAGC	2 cut(s)	184, 531
BsgI	GTGCAG	2 cut(s)	183, 538
Bsh1236I	CGCG	1 cut(s)	269
BshFI	GGCC	5 cut(s)	272, 300, 451, 622, 735
BslFI	GGGAC	2 cut(s)	334, 516
BslI	CCNNNNNNNGG	5 cut(s)	39, 184, 500, 586, 736
BsmAI	GTCTC	1 cut(s)	397
BsmFI	GGGAC	2 cut(s)	334, 516
BsnI	GGCC	5 cut(s)	272, 300, 451, 622, 735
Bsp1286I	GDGCHC	1 cut(s)	727
Bsp143I	GATC	7 cut(s)	16, 65, 282, 289, 332, 745, 1002
BspACI	CCGC	1 cut(s)	269
BspANI	GGCC	5 cut(s)	272, 300, 451, 622, 735
BspCNI	CTCAG	4 cut(s)	126, 156, 454, 637
BspFNI	CGCG	1 cut(s)	269
BspHI	TCATGA	1 cut(s)	226
BspPI	GGATC	2 cut(s)	740, 997
BsrDI	GCAATG	1 cut(s)	645
BsrI	ACTGG	2 cut(s)	649, 703
BssECI	CCNNGG	1 cut(s)	730
BssMI	GATC	7 cut(s)	16, 65, 282, 289, 332, 745, 1002
Bst2UI	CCWGG	3 cut(s)	495, 581, 737
Bst4CI	ACNGT	4 cut(s)	80, 204, 390, 755
Bst6I	CTCTTC	2 cut(s)	459, 481
BstAPI	GCANNNNNTGC	2 cut(s)	206, 264
BstC8I	GCNNGC	3 cut(s)	302, 727, 913
BstDEI	CTNAG	6 cut(s)	113, 164, 441, 624, 905, 957
BstF5I	GGATG	2 cut(s)	58, 322
BstFNI	CGCG	1 cut(s)	269
BstHHI	GCGC	2 cut(s)	269, 911
BstKTI	GATC	7 cut(s)	19, 68, 285, 292, 335, 748, 1005
BstMAI	GTCTC	1 cut(s)	397
BstMBI	GATC	7 cut(s)	16, 65, 282, 289, 332, 745, 1002
BstMWI	GCNNNNNNNGC	4 cut(s)	189, 206, 264, 932
BstNI	CCWGG	3 cut(s)	495, 581, 737
BstSCI	CCNGG	3 cut(s)	493, 579, 735
BstSFI	CTRYAG	1 cut(s)	927
BstSLI	GKGCMC	1 cut(s)	727
BstUI	CGCG	1 cut(s)	269
BstV1I	GCAGC	2 cut(s)	184, 531
BsuRI	GGCC	5 cut(s)	272, 300, 451, 622, 735
BtsCI	GGATG	2 cut(s)	58, 322
Cac8I	GCNNGC	3 cut(s)	302, 727, 913
CaiI	CAGNNNCTG	1 cut(s)	514
CciI	TCATGA	1 cut(s)	226
CfoI	GCGC	2 cut(s)	269, 911
Cfr13I	GGNCC	3 cut(s)	298, 620, 701
Csp6I	GTAC	2 cut(s)	696, 818
CviAII	CATG	6 cut(s)	39, 184, 193, 227, 325, 1007
CviQI	GTAC	2 cut(s)	696, 818
DdeI	CTNAG	6 cut(s)	113, 164, 441, 624, 905, 957
DpnI	GATC	7 cut(s)	18, 67, 284, 291, 334, 747, 1004
DpnII	GATC	7 cut(s)	16, 65, 282, 289, 332, 745, 1002
EaeI	YGGCCR	1 cut(s)	270
Eam1104I	CTCTTC	2 cut(s)	459, 481
EarI	CTCTTC	2 cut(s)	459, 481
Eco47I	GGWCC	1 cut(s)	701
Eco57I	CTGAAG	1 cut(s)	869
EcoRII	CCWGG	3 cut(s)	493, 579, 735
FaeI	CATG	6 cut(s)	42, 187, 196, 230, 328, 1010
FalI	AAGNNNNNCTT	2 cut(s)	55, 87
FaqI	GGGAC	2 cut(s)	334, 516
FatI	CATG	6 cut(s)	38, 183, 192, 226, 324, 1006
FbaI	TGATCA	2 cut(s)	16, 289
Fnu4HI	GCNGC	3 cut(s)	198, 270, 520
FokI	GGATG	2 cut(s)	65, 329
Fsp4HI	GCNGC	3 cut(s)	198, 270, 520
FspBI	CTAG	2 cut(s)	353, 705
GlaI	GCGC	2 cut(s)	268, 910
GluI	GCNGC	3 cut(s)	198, 270, 520
HaeIII	GGCC	5 cut(s)	272, 300, 451, 622, 735
HhaI	GCGC	2 cut(s)	269, 911
Hin1II	CATG	6 cut(s)	42, 187, 196, 230, 328, 1010
Hin6I	GCGC	2 cut(s)	267, 909
HinP1I	GCGC	2 cut(s)	267, 909
HindIII	AAGCTT	1 cut(s)	459
HinfI	GANTC	6 cut(s)	10, 236, 405, 628, 802, 985
HphI	GGTGA	1 cut(s)	553
Hpy166II	GTNNAC	2 cut(s)	119, 386
Hpy188I	TCNGA	6 cut(s)	165, 241, 402, 553, 627, 774
Hpy188III	TCNNGA	3 cut(s)	14, 227, 280
Hpy8I	GTNNAC	2 cut(s)	119, 386
HpyAV	CCTTC	2 cut(s)	565, 615
HpyCH4III	ACNGT	4 cut(s)	80, 204, 390, 755
HpyCH4V	TGCA	6 cut(s)	200, 245, 304, 519, 652, 808
HpyF10VI	GCNNNNNNNGC	4 cut(s)	189, 206, 264, 932
HpyF3I	CTNAG	6 cut(s)	113, 164, 441, 624, 905, 957
Hsp92II	CATG	6 cut(s)	42, 187, 196, 230, 328, 1010
HspAI	GCGC	2 cut(s)	267, 909
Ksp22I	TGATCA	2 cut(s)	16, 289
Kzo9I	GATC	7 cut(s)	16, 65, 282, 289, 332, 745, 1002
LmnI	GCTCC	1 cut(s)	923
Lsp1109I	GCAGC	2 cut(s)	184, 531
LweI	GCATC	2 cut(s)	232, 854
MaeI	CTAG	2 cut(s)	353, 705
MaeIII	GTNAC	4 cut(s)	80, 320, 559, 961
MalI	GATC	7 cut(s)	18, 67, 284, 291, 334, 747, 1004
MboI	GATC	7 cut(s)	16, 65, 282, 289, 332, 745, 1002
MboII	GAAGA	6 cut(s)	146, 446, 468, 811, 875, 1005
MfeI	CAATTG	2 cut(s)	262, 376
MhlI	GDGCHC	1 cut(s)	727
MluCI	AATT	7 cut(s)	129, 211, 262, 376, 435, 592, 783
MlyI	GAGTC	3 cut(s)	245, 399, 994
MmeI	TCCRAC	1 cut(s)	958
MroXI	GAANNNNTTC	2 cut(s)	108, 768
MspA1I	CMGCKG	1 cut(s)	445
MspR9I	CCNGG	3 cut(s)	495, 581, 737
MunI	CAATTG	2 cut(s)	262, 376
MvaI	CCWGG	3 cut(s)	495, 581, 737
MvnI	CGCG	1 cut(s)	269
MwoI	GCNNNNNNNGC	4 cut(s)	189, 206, 264, 932
NdeII	GATC	7 cut(s)	16, 65, 282, 289, 332, 745, 1002
NlaIII	CATG	6 cut(s)	42, 187, 196, 230, 328, 1010
NmeAIII	GCCGAG	1 cut(s)	755
NmuCI	GTSAC	1 cut(s)	559
PagI	TCATGA	1 cut(s)	226
PdmI	GAANNNNTTC	2 cut(s)	108, 768
PfeI	GAWTC	3 cut(s)	10, 628, 802
PflFI	GACNNNGTC	1 cut(s)	984
PflMI	CCANNNNNTGG	2 cut(s)	184, 586
PkrI	GCNGC	3 cut(s)	199, 271, 521
PleI	GAGTC	3 cut(s)	244, 399, 993
PpsI	GAGTC	3 cut(s)	244, 399, 993
Psp6I	CCWGG	3 cut(s)	493, 579, 735
PspGI	CCWGG	3 cut(s)	493, 579, 735
PspPI	GGNCC	3 cut(s)	298, 620, 701
PstNI	CAGNNNCTG	1 cut(s)	514
PsyI	GACNNNGTC	1 cut(s)	984
PvuII	CAGCTG	1 cut(s)	445
RsaI	GTAC	2 cut(s)	697, 819
RsaNI	GTAC	2 cut(s)	696, 818
SatI	GCNGC	3 cut(s)	198, 270, 520
Sau3AI	GATC	7 cut(s)	16, 65, 282, 289, 332, 745, 1002
Sau96I	GGNCC	3 cut(s)	298, 620, 701
SchI	GAGTC	3 cut(s)	245, 399, 994
ScrFI	CCNGG	3 cut(s)	495, 581, 737
SduI	GDGCHC	1 cut(s)	727
SfaNI	GCATC	2 cut(s)	232, 854
SfcI	CTRYAG	1 cut(s)	927
SinI	GGWCC	1 cut(s)	701
SmlI	CTYRAG	1 cut(s)	896
SmoI	CTYRAG	1 cut(s)	896
Sse9I	AATT	7 cut(s)	129, 211, 262, 376, 435, 592, 783
SsiI	CCGC	1 cut(s)	269
SspMI	CTAG	2 cut(s)	353, 705
StyD4I	CCNGG	3 cut(s)	493, 579, 735
TaaI	ACNGT	4 cut(s)	80, 204, 390, 755
TaqI	TCGA	2 cut(s)	281, 867
TasI	AATT	7 cut(s)	129, 211, 262, 376, 435, 592, 783
TatI	WGTACW	1 cut(s)	695
TauI	GCSGC	1 cut(s)	272
TfiI	GAWTC	3 cut(s)	10, 628, 802
TseFI	GTSAC	1 cut(s)	559
TseI	GCWGC	2 cut(s)	197, 519
Tsp45I	GTSAC	1 cut(s)	559
TspDTI	ATGAA	3 cut(s)	204, 812, 873
Tth111I	GACNNNGTC	1 cut(s)	984
Van91I	CCANNNNNTGG	2 cut(s)	184, 586
VpaK11BI	GGWCC	1 cut(s)	701
XmnI	GAANNNNTTC	2 cut(s)	108, 768
XspI	CTAG	2 cut(s)	353, 705

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.