Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0012560

Physical Location & Seq

Genomic Coordinates Forward (+)

8654146 .. 8655957

Gene Structure 1812 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG106600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGTTTCTCAGTTCACTTGGAGTAATTGAAGATGACAGCAATAACTCTGCTACAAATCTGAGCAACTCAAACCACAGCATGGAGAGCATGGCTGCACAGTCTGCTAATTCATCTGTTGCTCATGATTTTGAGTCTGATGCACAAGACAATGGCAACAATTGCACCGCCAACTTCTCGATCAATGATCAAATGGGCCTGCAATATGATTTGGATGGTAACATGGCGAGATCAACATCTGTTTCGTCCCTAGAGCCACAAAATGTGGGAGGCAATTGTTGTGAACAGTCTGTCTTTCAGAGACTCAATGGAGATATTAAAACCCTTTCTCCAATTTCTCAGCTGTGGCCTCTTCAAGCTTATGAGGGTGTCTCTTCTCCTCTTTGTCCTCCTGGTATGGGACAACAGAAGCTGTGCAGCTTTGGTAGTAATGATATATATGAGTTATCTGATTTAGTCACCACAGAGAAGGTAAGCCAGGAGATGGGAAATTATCCTTTGCCCTCTTTTGCTTCTGGGCCTCAGATTCCAATGGCAATGGCTGGATTGCAGTCTTTCCCACAGACTACATCAACTAACCCCTCTGCTGAATGTACTGGACCTAGAAAGCCTCGTATGAGGGCACGCCGAGGCCAGGCAACTGATCCACACAGTATTGCTGAAAGGCTTCGGAGAGAGAAAATTGCTGACAGAATGAAGAATCTGCAAGAACTTGTACCAAAGTCTAACAAGACTGACAAGGCATCTATGCTTGATGAAATCATCGAGTATGTCAAGTTTCTTCAGCAACAACTCAAGGTTCTAAGCGCACGCAGATTGGGAGCTACAGGGGCAGTTATCTTGGATAATCAGGCTGAGGTAACAATAACACAAGTTGGACAGAGTCTATTTGATAATGTGATCCATGTTTCTTCACTTGATACTCTTACAGCTATGTTGCTTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR zf-C3HC4

Protein Analysis

314

Amino Acids

34.12

Weight (kDa)

4.87

Isoelectric Point (pI)

49.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	216 - 261	2.2e-10	Helix-loop-helix DNA-binding domain
bHLH_SAC51	PF23173	220 - 266	4.6e-07	Transcription factor SAC51 bHLH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012560)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g09520 FvH4_1g09520
malus_domestica	MD02G1103800.v1.1
prunus_persica	Prupe.7G191100_v2.0.a1 Prupe.7G191100_v2.0.a1 Prupe.7G191100_v2.0.a1 Prupe.7G191100_v2.0.a1
pyrus_communis	pycom02g08150
rosa_chinensis	RchiOBHm_Chr2g0096091
rosa_laevigata	RLG00000016624
rosa_multiflora	Rmu_sc0005612.1_g000002 Rmu_sc0005996.1_g000005
rosa_roxburghii	Rroxscaffold_2G00145760
rosa_rugosa	Rorug02G0056900
rosa_samantha	Rh2AG103900 Rh2BG106000 Rh2CG107900 Rh2DG106600
rosa_wichuraiana	Rw2G007980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	79, 481
AciI	CCGC	1 cut(s)	165
AclWI	GGATC	2 cut(s)	635, 892
AcuI	CTGAAG	1 cut(s)	764
AfaI	GTAC	2 cut(s)	592, 714
AfiI	CCNNNNNNNGG	4 cut(s)	79, 395, 481, 631
AgsI	TTSAA	2 cut(s)	29, 353
AjnI	CCWGG	3 cut(s)	388, 474, 630
AluBI	AGCT	6 cut(s)	340, 356, 409, 417, 821, 929
AluI	AGCT	6 cut(s)	340, 356, 409, 417, 821, 929
Alw26I	GTCTC	2 cut(s)	292, 373
AlwI	GGATC	2 cut(s)	635, 892
AlwNI	CAGNNNCTG	1 cut(s)	409
AoxI	GGCC	4 cut(s)	193, 344, 515, 628
ApeKI	GCWGC	2 cut(s)	92, 414
Asp700I	GAANNNNTTC	1 cut(s)	663
AspLEI	GCGC	1 cut(s)	806
AspS9I	GGNCC	3 cut(s)	193, 515, 596
AsuHPI	GGTGA	1 cut(s)	448
AvaII	GGWCC	1 cut(s)	596
BaeGI	GKGCMC	1 cut(s)	622
BbvCI	CCTCAGC	1 cut(s)	852
BbvI	GCAGC	2 cut(s)	79, 426
BccI	CCATC	2 cut(s)	206, 475
BciT130I	CCWGG	3 cut(s)	390, 476, 632
BclI	TGATCA	1 cut(s)	184
BcoDI	GTCTC	2 cut(s)	292, 373
BfaI	CTAG	2 cut(s)	248, 600
BfmI	CTRYAG	1 cut(s)	822
BisI	GCNGC	2 cut(s)	93, 415
BlsI	GCNGC	2 cut(s)	94, 416
Bme1390I	CCNGG	3 cut(s)	390, 476, 632
Bme18I	GGWCC	1 cut(s)	596
BmgT120I	GGNCC	3 cut(s)	193, 515, 596
BmrFI	CCNGG	3 cut(s)	390, 476, 632
BmsI	GCATC	2 cut(s)	127, 749
BplI	GAGNNNNNCTC	2 cut(s)	353, 385
Bpu10I	CCTNAGC	1 cut(s)	852
BpuEI	CTTGAG	1 cut(s)	776
BsaBI	GATNNNNATC	1 cut(s)	232
BsaJI	CCNNGG	1 cut(s)	625
BsaXI	ACNNNNNCTCC	2 cut(s)	310, 340
Bsc4I	CCNNNNNNNGG	4 cut(s)	79, 395, 481, 631
Bse1I	ACTGG	1 cut(s)	598
Bse3DI	GCAATG	1 cut(s)	540
Bse8I	GATNNNNATC	1 cut(s)	232
BseBI	CCWGG	3 cut(s)	390, 476, 632
BseDI	CCNNGG	1 cut(s)	625
BseGI	GGATG	1 cut(s)	217
BseJI	GATNNNNATC	1 cut(s)	232
BseLI	CCNNNNNNNGG	4 cut(s)	79, 395, 481, 631
BseMI	GCAATG	1 cut(s)	540
BseMII	CTCAG	5 cut(s)	22, 50, 350, 533, 843
BseNI	ACTGG	1 cut(s)	598
BseRI	GAGGAG	1 cut(s)	366
BseSI	GKGCMC	1 cut(s)	622
BseXI	GCAGC	2 cut(s)	79, 426
BsgI	GTGCAG	2 cut(s)	78, 433
BshFI	GGCC	4 cut(s)	195, 346, 517, 630
BslFI	GGGAC	2 cut(s)	229, 411
BslI	CCNNNNNNNGG	4 cut(s)	79, 395, 481, 631
BsmAI	GTCTC	2 cut(s)	292, 373
BsmFI	GGGAC	2 cut(s)	229, 411
BsnI	GGCC	4 cut(s)	195, 346, 517, 630
Bsp1286I	GDGCHC	1 cut(s)	622
Bsp143I	GATC	5 cut(s)	177, 184, 227, 640, 897
BspACI	CCGC	1 cut(s)	165
BspANI	GGCC	4 cut(s)	195, 346, 517, 630
BspCNI	CTCAG	5 cut(s)	21, 51, 349, 532, 844
BspHI	TCATGA	1 cut(s)	121
BspPI	GGATC	2 cut(s)	635, 892
BsrDI	GCAATG	1 cut(s)	540
BsrI	ACTGG	1 cut(s)	598
BssECI	CCNNGG	1 cut(s)	625
BssMI	GATC	5 cut(s)	177, 184, 227, 640, 897
Bst2UI	CCWGG	3 cut(s)	390, 476, 632
Bst4CI	ACNGT	3 cut(s)	99, 285, 650
Bst6I	CTCTTC	2 cut(s)	354, 376
BstAPI	GCANNNNNTGC	2 cut(s)	101, 159
BstC8I	GCNNGC	3 cut(s)	197, 622, 808
BstDEI	CTNAG	6 cut(s)	8, 59, 336, 519, 800, 852
BstF5I	GGATG	1 cut(s)	217
BstHHI	GCGC	1 cut(s)	806
BstKTI	GATC	5 cut(s)	180, 187, 230, 643, 900
BstMAI	GTCTC	2 cut(s)	292, 373
BstMBI	GATC	5 cut(s)	177, 184, 227, 640, 897
BstMWI	GCNNNNNNNGC	4 cut(s)	84, 101, 159, 827
BstNI	CCWGG	3 cut(s)	390, 476, 632
BstSCI	CCNGG	3 cut(s)	388, 474, 630
BstSFI	CTRYAG	1 cut(s)	822
BstSLI	GKGCMC	1 cut(s)	622
BstV1I	GCAGC	2 cut(s)	79, 426
BsuRI	GGCC	4 cut(s)	195, 346, 517, 630
BtsCI	GGATG	1 cut(s)	217
Cac8I	GCNNGC	3 cut(s)	197, 622, 808
CaiI	CAGNNNCTG	1 cut(s)	409
CciI	TCATGA	1 cut(s)	121
CfoI	GCGC	1 cut(s)	806
Cfr13I	GGNCC	3 cut(s)	193, 515, 596
Csp6I	GTAC	2 cut(s)	591, 713
CviAII	CATG	5 cut(s)	79, 88, 122, 220, 902
CviQI	GTAC	2 cut(s)	591, 713
DdeI	CTNAG	6 cut(s)	8, 59, 336, 519, 800, 852
DpnI	GATC	5 cut(s)	179, 186, 229, 642, 899
DpnII	GATC	5 cut(s)	177, 184, 227, 640, 897
Eam1104I	CTCTTC	2 cut(s)	354, 376
EarI	CTCTTC	2 cut(s)	354, 376
Eco47I	GGWCC	1 cut(s)	596
Eco57I	CTGAAG	1 cut(s)	764
EcoRII	CCWGG	3 cut(s)	388, 474, 630
FaeI	CATG	5 cut(s)	82, 91, 125, 223, 905
FaqI	GGGAC	2 cut(s)	229, 411
FatI	CATG	5 cut(s)	78, 87, 121, 219, 901
FbaI	TGATCA	1 cut(s)	184
Fnu4HI	GCNGC	2 cut(s)	93, 415
FokI	GGATG	1 cut(s)	224
Fsp4HI	GCNGC	2 cut(s)	93, 415
FspBI	CTAG	2 cut(s)	248, 600
GlaI	GCGC	1 cut(s)	805
GluI	GCNGC	2 cut(s)	93, 415
HaeIII	GGCC	4 cut(s)	195, 346, 517, 630
HhaI	GCGC	1 cut(s)	806
Hin1II	CATG	5 cut(s)	82, 91, 125, 223, 905
Hin6I	GCGC	1 cut(s)	804
HinP1I	GCGC	1 cut(s)	804
HindIII	AAGCTT	1 cut(s)	354
HinfI	GANTC	5 cut(s)	131, 300, 523, 697, 880
HphI	GGTGA	1 cut(s)	448
Hpy166II	GTNNAC	2 cut(s)	14, 281
Hpy188I	TCNGA	6 cut(s)	60, 136, 297, 448, 522, 669
Hpy188III	TCNNGA	2 cut(s)	122, 175
Hpy8I	GTNNAC	2 cut(s)	14, 281
HpyAV	CCTTC	1 cut(s)	460
HpyCH4III	ACNGT	3 cut(s)	99, 285, 650
HpyCH4V	TGCA	7 cut(s)	95, 140, 162, 199, 414, 547, 703
HpyF10VI	GCNNNNNNNGC	4 cut(s)	84, 101, 159, 827
HpyF3I	CTNAG	6 cut(s)	8, 59, 336, 519, 800, 852
Hsp92II	CATG	5 cut(s)	82, 91, 125, 223, 905
HspAI	GCGC	1 cut(s)	804
Ksp22I	TGATCA	1 cut(s)	184
Kzo9I	GATC	5 cut(s)	177, 184, 227, 640, 897
LmnI	GCTCC	1 cut(s)	818
Lsp1109I	GCAGC	2 cut(s)	79, 426
LweI	GCATC	2 cut(s)	127, 749
MaeI	CTAG	2 cut(s)	248, 600
MaeIII	GTNAC	3 cut(s)	215, 454, 856
MalI	GATC	5 cut(s)	179, 186, 229, 642, 899
MboI	GATC	5 cut(s)	177, 184, 227, 640, 897
MboII	GAAGA	6 cut(s)	41, 341, 363, 706, 770, 900
MfeI	CAATTG	2 cut(s)	157, 271
MhlI	GDGCHC	1 cut(s)	622
MluCI	AATT	7 cut(s)	24, 106, 157, 271, 330, 487, 678
MlyI	GAGTC	3 cut(s)	140, 294, 889
MmeI	TCCRAC	1 cut(s)	853
MroXI	GAANNNNTTC	1 cut(s)	663
MseI	TTAA	1 cut(s)	315
MspA1I	CMGCKG	1 cut(s)	340
MspR9I	CCNGG	3 cut(s)	390, 476, 632
MunI	CAATTG	2 cut(s)	157, 271
MvaI	CCWGG	3 cut(s)	390, 476, 632
MwoI	GCNNNNNNNGC	4 cut(s)	84, 101, 159, 827
NdeII	GATC	5 cut(s)	177, 184, 227, 640, 897
NlaIII	CATG	5 cut(s)	82, 91, 125, 223, 905
NmeAIII	GCCGAG	1 cut(s)	650
NmuCI	GTSAC	1 cut(s)	454
PagI	TCATGA	1 cut(s)	121
PdmI	GAANNNNTTC	1 cut(s)	663
PfeI	GAWTC	2 cut(s)	523, 697
PflFI	GACNNNGTC	1 cut(s)	879
PflMI	CCANNNNNTGG	2 cut(s)	79, 481
PkrI	GCNGC	2 cut(s)	94, 416
PleI	GAGTC	3 cut(s)	139, 294, 888
PpsI	GAGTC	3 cut(s)	139, 294, 888
Psp6I	CCWGG	3 cut(s)	388, 474, 630
PspGI	CCWGG	3 cut(s)	388, 474, 630
PspPI	GGNCC	3 cut(s)	193, 515, 596
PstNI	CAGNNNCTG	1 cut(s)	409
PsyI	GACNNNGTC	1 cut(s)	879
PvuII	CAGCTG	1 cut(s)	340
RsaI	GTAC	2 cut(s)	592, 714
RsaNI	GTAC	2 cut(s)	591, 713
SaqAI	TTAA	1 cut(s)	315
SatI	GCNGC	2 cut(s)	93, 415
Sau3AI	GATC	5 cut(s)	177, 184, 227, 640, 897
Sau96I	GGNCC	3 cut(s)	193, 515, 596
SchI	GAGTC	3 cut(s)	140, 294, 889
ScrFI	CCNGG	3 cut(s)	390, 476, 632
SduI	GDGCHC	1 cut(s)	622
SfaNI	GCATC	2 cut(s)	127, 749
SfcI	CTRYAG	1 cut(s)	822
SinI	GGWCC	1 cut(s)	596
SmlI	CTYRAG	1 cut(s)	791
SmoI	CTYRAG	1 cut(s)	791
Sse9I	AATT	7 cut(s)	24, 106, 157, 271, 330, 487, 678
SsiI	CCGC	1 cut(s)	165
SspMI	CTAG	2 cut(s)	248, 600
StyD4I	CCNGG	3 cut(s)	388, 474, 630
TaaI	ACNGT	3 cut(s)	99, 285, 650
TaqI	TCGA	2 cut(s)	176, 762
TasI	AATT	7 cut(s)	24, 106, 157, 271, 330, 487, 678
TatI	WGTACW	1 cut(s)	590
TfiI	GAWTC	2 cut(s)	523, 697
Tru1I	TTAA	1 cut(s)	315
Tru9I	TTAA	1 cut(s)	315
TseFI	GTSAC	1 cut(s)	454
TseI	GCWGC	2 cut(s)	92, 414
Tsp45I	GTSAC	1 cut(s)	454
TspDTI	ATGAA	3 cut(s)	99, 707, 768
Tth111I	GACNNNGTC	1 cut(s)	879
Van91I	CCANNNNNTGG	2 cut(s)	79, 481
VpaK11BI	GGWCC	1 cut(s)	596
XmnI	GAANNNNTTC	1 cut(s)	663
XspI	CTAG	2 cut(s)	248, 600

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.