FvH4_1g09650

5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0012369
Physical Location & Seq
Reverse (-)
5168359 .. 5171207
2849 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g09650.t1

Sequence Viewer

Length: 1002 bp
ATGTTGGTTTTGAAACGTCAAGGCGCCGTTAACTACCTCACACACCCTTCAAAGCTCCGACCTTTATTACCTCCTCCTCGTCTTCCTCCTCGATTCACCTCTATGGCCGCGTACTTGTACGGCCATAACTGTAAGGGATTCCACGCCCAATCCCCGATTCCTCAGCCGCCGCAGAAGCCCTGCTGGCCGTTGGATCGACTCGCGTGGCGGATTCGGAATCAGAGTAGAGGTGATTTGAGCGTCAAGTGTTGTGTTGGGAGTGAGAACAAAAGATTGAAGAGTAATGCTGTAAGGGACGTGGATTTGGAGATACGGAGATCCGGGGAGGTTAGGTTTCCGGGGAGGAAGATTAACGGGTTTCATAGTCAGAGTTTGTTGGGGAGGGAGAAGATTGTGGTGGCGGTTGATGTGGATGAGGTTCTGGGGAACTTTGTGTCGGCGCTCAACAGGTTCATTGCTGATCGTTACGCGGCGAACCATTCGGTTTCGGAGTACCATGTGTATGAGTTCTTCAAGATATGGAATTGTTCCCGTGATGAAGCCGATCTACGTGTTCACGAGTTCTTTAAAACACCATATTTCAAGACTGGGATCCATCCACTCCCTGGTGCTAAGGAGACACTTCATAAGTTGTCAGGATTTTGTAACCTGTCAGTTGTGACGTCTCGTCAGAATGCAATCAAGGACCATACAATTCAATGGATTGAAAGTCATTTTCCAGGACTATTTCAGGAGATTCACTTTGGGAACCACTTTGCTCTACATGGAGAATCAAGGCCTAAGTCAGAAATATGCAGGTCTCTAGGAGCAACGGTTCTGATTGATGACAATCCAAGATATGCACTTGAATGTGCCGAAGTTGGGATCAGGGTTCTACTTTTTGATTTTGAGAACTCATATCCCTGGTGCAAGACCGATTCTGTTGATCTACATCCCCTGGTGACCAAGGTTCATAACTGGGAAGCAGTGGAGAAGCAATTAATGGCATGGGTTACTTCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NT5C

Protein Analysis

334

Amino Acids

38.11

Weight (kDa)

9.09

Isoelectric Point (pI)

35.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NT5C PF06941 131 - 285 1.1e-14 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012369)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G33140
fragaria_vesca FvH4_1g09650 FvH4_1g09650
malus_domestica MD02G1105400.v1.1 MD15G1225300.v1.1
prunus_persica Prupe.7G189700_v2.0.a1 Prupe.7G189700_v2.0.a1 Prupe.7G189700_v2.0.a1
pyrus_communis pycom15g20010
rosa_chinensis RchiOBHm_Chr2g0096491
rosa_laevigata RLG00000016644
rosa_multiflora Rmu_sc0004096.1_g000012
rosa_roxburghii Rroxscaffold_2G00145600
rosa_rugosa Rorug02G0058100
rosa_samantha Rh2AG105100 Rh2BG107200 Rh2CG109000 Rh2DG108200
rosa_wichuraiana Rw2G008120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 665
Acc36I ACCTGC 1 cut(s) 786
AccB1I GGYRCC 1 cut(s) 23
AccB7I CCANNNNNTGG 1 cut(s) 605
AccII CGCG 3 cut(s) 110, 203, 470
AciI CCGC 6 cut(s) 108, 167, 170, 208, 401, 470
AclWI GGATC 5 cut(s) 201, 312, 586, 599, 872
AcoI YGGCCR 3 cut(s) 105, 121, 185
AcyI GRCGYC 2 cut(s) 24, 662
AfaI GTAC 3 cut(s) 113, 119, 494
AfiI CCNNNNNNNGG 2 cut(s) 605, 861
AflIII ACRYGT 1 cut(s) 550
AgsI TTSAA 8 cut(s) 13, 51, 277, 514, 583, 698, 707, 848
AhdI GACNNNNNGTC 1 cut(s) 666
AjiI CACGTC 1 cut(s) 298
AjnI CCWGG 4 cut(s) 604, 718, 902, 936
AjuI GAANNNNNNNTTGG 2 cut(s) 141, 173
AloI GAACNNNNNNTCC 2 cut(s) 798, 830
AluBI AGCT 1 cut(s) 55
AluI AGCT 1 cut(s) 55
Alw26I GTCTC 3 cut(s) 611, 669, 804
AlwI GGATC 5 cut(s) 201, 312, 586, 599, 872
AoxI GGCC 4 cut(s) 105, 121, 185, 776
AseI ATTAAT 1 cut(s) 980
AspLEI GCGC 2 cut(s) 26, 442
AspS9I GGNCC 1 cut(s) 685
AsuC2I CCSGG 2 cut(s) 322, 339
AsuHPI GGTGA 3 cut(s) 88, 242, 952
AvaII GGWCC 1 cut(s) 685
BamHI GGATCC 1 cut(s) 591
BanI GGYRCC 1 cut(s) 23
BarI GAAGNNNNNNTAC 4 cut(s) 494, 526, 531, 563
BauI CACGAG 1 cut(s) 557
BbsI GAAGAC 1 cut(s) 74
BbvCI CCTCAGC 1 cut(s) 162
BccI CCATC 1 cut(s) 603
BceAI ACGGC 3 cut(s) 11, 136, 172
BciT130I CCWGG 4 cut(s) 606, 720, 904, 938
BcnI CCSGG 2 cut(s) 322, 339
BcoDI GTCTC 3 cut(s) 611, 669, 804
BfaI CTAG 1 cut(s) 803
BfoI RGCGCY 2 cut(s) 27, 443
BfuAI ACCTGC 1 cut(s) 786
BglI GCCNNNNNGGC 1 cut(s) 184
BisI GCNGC 4 cut(s) 108, 167, 170, 471
BlsI GCNGC 4 cut(s) 109, 168, 171, 472
Bme1390I CCNGG 6 cut(s) 322, 339, 606, 720, 904, 938
Bme18I GGWCC 1 cut(s) 685
BmeRI GACNNNNNGTC 1 cut(s) 666
BmgBI CACGTC 1 cut(s) 298
BmgT120I GGNCC 1 cut(s) 685
BmiI GGNNCC 3 cut(s) 25, 593, 749
BmrFI CCNGG 6 cut(s) 322, 339, 606, 720, 904, 938
BmrI ACTGGG 2 cut(s) 597, 967
BmuI ACTGGG 2 cut(s) 597, 967
BpiI GAAGAC 1 cut(s) 74
Bpu10I CCTNAGC 2 cut(s) 162, 612
BpuMI CCSGG 2 cut(s) 322, 339
BsaAI YACGTR 1 cut(s) 551
BsaBI GATNNNNATC 2 cut(s) 828, 930
BsaHI GRCGYC 2 cut(s) 24, 662
BsaI GGTCTC 1 cut(s) 804
BsaJI CCNNGG 6 cut(s) 321, 338, 604, 902, 936, 945
BsaXI ACNNNNNCTCC 4 cut(s) 317, 347, 798, 828
Bsc4I CCNNNNNNNGG 2 cut(s) 605, 861
Bse1I ACTGG 2 cut(s) 592, 962
Bse3DI GCAATG 1 cut(s) 453
Bse8I GATNNNNATC 2 cut(s) 828, 930
BseBI CCWGG 4 cut(s) 606, 720, 904, 938
BseDI CCNNGG 6 cut(s) 321, 338, 604, 902, 936, 945
BseGI GGATG 3 cut(s) 418, 595, 931
BseJI GATNNNNATC 2 cut(s) 828, 930
BseLI CCNNNNNNNGG 2 cut(s) 605, 861
BseMI GCAATG 1 cut(s) 453
BseMII CTCAG 1 cut(s) 176
BseNI ACTGG 2 cut(s) 592, 962
BseRI GAGGAG 3 cut(s) 63, 66, 78
Bsh1236I CGCG 3 cut(s) 110, 203, 470
BshFI GGCC 4 cut(s) 107, 123, 187, 778
BshNI GGYRCC 1 cut(s) 23
BsiSI CCGG 2 cut(s) 321, 338
BslFI GGGAC 1 cut(s) 308
BslI CCNNNNNNNGG 2 cut(s) 605, 861
BsmAI GTCTC 3 cut(s) 611, 669, 804
BsmBI CGTCTC 1 cut(s) 669
BsmFI GGGAC 1 cut(s) 308
BsmI GAATGC 1 cut(s) 679
BsnI GGCC 4 cut(s) 107, 123, 187, 778
Bso31I GGTCTC 1 cut(s) 804
Bsp143I GATC 7 cut(s) 193, 317, 460, 544, 591, 864, 925
BspACI CCGC 6 cut(s) 108, 167, 170, 208, 401, 470
BspANI GGCC 4 cut(s) 107, 123, 187, 778
BspCNI CTCAG 1 cut(s) 175
BspFNI CGCG 3 cut(s) 110, 203, 470
BspLI GGNNCC 3 cut(s) 25, 593, 749
BspMI ACCTGC 1 cut(s) 786
BspPI GGATC 5 cut(s) 201, 312, 586, 599, 872
BspT107I GGYRCC 1 cut(s) 23
BspTNI GGTCTC 1 cut(s) 804
BsrDI GCAATG 1 cut(s) 453
BsrI ACTGG 2 cut(s) 592, 962
BssECI CCNNGG 6 cut(s) 321, 338, 604, 902, 936, 945
BssMI GATC 7 cut(s) 193, 317, 460, 544, 591, 864, 925
BssNI GRCGYC 2 cut(s) 24, 662
BssSI CACGAG 1 cut(s) 557
BssT1I CCWWGG 1 cut(s) 945
Bst2BI CACGAG 1 cut(s) 557
Bst2UI CCWGG 4 cut(s) 606, 720, 904, 938
Bst4CI ACNGT 2 cut(s) 131, 814
Bst6I CTCTTC 1 cut(s) 272
BstACI GRCGYC 2 cut(s) 24, 662
BstBAI YACGTR 1 cut(s) 551
BstC8I GCNNGC 1 cut(s) 185
BstDEI CTNAG 3 cut(s) 162, 612, 780
BstEII GGTNACC 1 cut(s) 940
BstF5I GGATG 3 cut(s) 418, 595, 931
BstFNI CGCG 3 cut(s) 110, 203, 470
BstH2I RGCGCY 2 cut(s) 27, 443
BstHHI GCGC 2 cut(s) 26, 442
BstKTI GATC 7 cut(s) 196, 320, 463, 547, 594, 867, 928
BstMAI GTCTC 3 cut(s) 611, 669, 804
BstMBI GATC 7 cut(s) 193, 317, 460, 544, 591, 864, 925
BstMWI GCNNNNNNNGC 2 cut(s) 175, 184
BstNI CCWGG 4 cut(s) 606, 720, 904, 938
BstPI GGTNACC 1 cut(s) 940
BstSCI CCNGG 6 cut(s) 320, 337, 604, 718, 902, 936
BstUI CGCG 3 cut(s) 110, 203, 470
BstV2I GAAGAC 1 cut(s) 74
BstX2I RGATCY 2 cut(s) 317, 591
BstYI RGATCY 2 cut(s) 317, 591
BsuRI GGCC 4 cut(s) 107, 123, 187, 778
BtrI CACGTC 1 cut(s) 298
BtsCI GGATG 3 cut(s) 418, 595, 931
BtsI GCAGTG 1 cut(s) 972
BtsIMutI CAGTG 1 cut(s) 972
BveI ACCTGC 1 cut(s) 786
Cac8I GCNNGC 1 cut(s) 185
CfoI GCGC 2 cut(s) 26, 442
Cfr13I GGNCC 1 cut(s) 685
CseI GACGC 1 cut(s) 229
Csp6I GTAC 3 cut(s) 112, 118, 493
CviAII CATG 3 cut(s) 497, 764, 987
CviJI RGCY 8 cut(s) 55, 107, 123, 166, 178, 187, 542, 778
CviKI_1 RGCY 8 cut(s) 55, 107, 123, 166, 178, 187, 542, 778
CviQI GTAC 3 cut(s) 112, 118, 493
DdeI CTNAG 3 cut(s) 162, 612, 780
DinI GGCGCC 1 cut(s) 25
DpnI GATC 7 cut(s) 195, 319, 462, 546, 593, 866, 927
DpnII GATC 7 cut(s) 193, 317, 460, 544, 591, 864, 925
DraI TTTAAA 1 cut(s) 568
DriI GACNNNNNGTC 1 cut(s) 666
EaeI YGGCCR 3 cut(s) 105, 121, 185
Eam1104I CTCTTC 1 cut(s) 272
Eam1105I GACNNNNNGTC 1 cut(s) 666
EarI CTCTTC 1 cut(s) 272
EciI GGCGGA 1 cut(s) 223
Eco130I CCWWGG 1 cut(s) 945
Eco147I AGGCCT 1 cut(s) 778
Eco31I GGTCTC 1 cut(s) 804
Eco47I GGWCC 1 cut(s) 685
Eco91I GGTNACC 1 cut(s) 940
EcoO65I GGTNACC 1 cut(s) 940
EcoRII CCWGG 4 cut(s) 604, 718, 902, 936
EcoT14I CCWWGG 1 cut(s) 945
EgeI GGCGCC 1 cut(s) 25
EheI GGCGCC 1 cut(s) 25
ErhI CCWWGG 1 cut(s) 945
Esp3I CGTCTC 1 cut(s) 669
FaeI CATG 3 cut(s) 500, 767, 990
FaqI GGGAC 1 cut(s) 308
FatI CATG 3 cut(s) 496, 763, 986
Fnu4HI GCNGC 4 cut(s) 108, 167, 170, 471
FokI GGATG 3 cut(s) 425, 582, 918
Fsp4HI GCNGC 4 cut(s) 108, 167, 170, 471
FspBI CTAG 1 cut(s) 803
GlaI GCGC 2 cut(s) 25, 441
GluI GCNGC 4 cut(s) 108, 167, 170, 471
HaeII RGCGCY 2 cut(s) 27, 443
HaeIII GGCC 4 cut(s) 107, 123, 187, 778
HapII CCGG 2 cut(s) 321, 338
HgaI GACGC 1 cut(s) 229
HhaI GCGC 2 cut(s) 26, 442
Hin1I GRCGYC 2 cut(s) 24, 662
Hin1II CATG 3 cut(s) 500, 767, 990
Hin6I GCGC 2 cut(s) 24, 440
HinP1I GCGC 2 cut(s) 24, 440
HincII GTYRAC 1 cut(s) 31
HindII GTYRAC 1 cut(s) 31
HinfI GANTC 9 cut(s) 93, 138, 157, 198, 211, 217, 736, 770, 917
HpaI GTTAAC 1 cut(s) 31
HpaII CCGG 2 cut(s) 321, 338
HphI GGTGA 3 cut(s) 88, 242, 952
Hpy166II GTNNAC 2 cut(s) 31, 556
Hpy188I TCNGA 8 cut(s) 59, 216, 222, 369, 490, 672, 787, 819
Hpy188III TCNNGA 5 cut(s) 514, 557, 583, 636, 731
Hpy8I GTNNAC 2 cut(s) 31, 556
HpyAV CCTTC 1 cut(s) 57
HpyCH4III ACNGT 2 cut(s) 131, 814
HpyCH4IV ACGT 4 cut(s) 16, 297, 550, 662
HpyCH4V TGCA 4 cut(s) 677, 795, 842, 909
HpyF10VI GCNNNNNNNGC 2 cut(s) 175, 184
HpyF3I CTNAG 3 cut(s) 162, 612, 780
HpySE526I ACGT 4 cut(s) 16, 297, 550, 662
Hsp92I GRCGYC 2 cut(s) 24, 662
Hsp92II CATG 3 cut(s) 500, 767, 990
HspAI GCGC 2 cut(s) 24, 440
KasI GGCGCC 1 cut(s) 23
KspAI GTTAAC 1 cut(s) 31
Kzo9I GATC 7 cut(s) 193, 317, 460, 544, 591, 864, 925
LmnI GCTCC 2 cut(s) 60, 806
MaeI CTAG 1 cut(s) 803
MaeII ACGT 4 cut(s) 16, 297, 550, 662
MaeIII GTNAC 5 cut(s) 464, 644, 658, 940, 991
MalI GATC 7 cut(s) 195, 319, 462, 546, 593, 866, 927
MboI GATC 7 cut(s) 193, 317, 460, 544, 591, 864, 925
MboII GAAGA 5 cut(s) 74, 289, 358, 400, 502
MflI RGATCY 2 cut(s) 317, 591
MluCI AATT 3 cut(s) 523, 693, 977
Mly113I GGCGCC 1 cut(s) 24
MlyI GAGTC 1 cut(s) 192
MmeI TCCRAC 2 cut(s) 82, 171
MseI TTAA 4 cut(s) 30, 351, 567, 980
MslI CAYNNNNRTG 3 cut(s) 101, 501, 847
MspI CCGG 2 cut(s) 321, 338
MspR9I CCNGG 6 cut(s) 322, 339, 606, 720, 904, 938
Mva1269I GAATGC 1 cut(s) 679
MvaI CCWGG 4 cut(s) 606, 720, 904, 938
MvnI CGCG 3 cut(s) 110, 203, 470
MwoI GCNNNNNNNGC 2 cut(s) 175, 184
NarI GGCGCC 1 cut(s) 24
NciI CCSGG 2 cut(s) 322, 339
NdeII GATC 7 cut(s) 193, 317, 460, 544, 591, 864, 925
NlaIII CATG 3 cut(s) 500, 767, 990
NlaIV GGNNCC 3 cut(s) 25, 593, 749
NmuCI GTSAC 2 cut(s) 658, 940
PceI AGGCCT 1 cut(s) 778
PctI GAATGC 1 cut(s) 679
PfeI GAWTC 8 cut(s) 93, 138, 157, 211, 217, 736, 770, 917
PflMI CCANNNNNTGG 1 cut(s) 605
PfoI TCCNGGA 1 cut(s) 718
PkrI GCNGC 4 cut(s) 109, 168, 171, 472
PleI GAGTC 1 cut(s) 192
PluTI GGCGCC 1 cut(s) 27
PpsI GAGTC 1 cut(s) 192
Ppu21I YACGTR 1 cut(s) 551
PshBI ATTAAT 1 cut(s) 980
Psp6I CCWGG 4 cut(s) 604, 718, 902, 936
PspEI GGTNACC 1 cut(s) 940
PspGI CCWGG 4 cut(s) 604, 718, 902, 936
PspN4I GGNNCC 3 cut(s) 25, 593, 749
PspPI GGNCC 1 cut(s) 685
PsuI RGATCY 2 cut(s) 317, 591
RsaI GTAC 3 cut(s) 113, 119, 494
RsaNI GTAC 3 cut(s) 112, 118, 493
RseI CAYNNNNRTG 3 cut(s) 101, 501, 847
SaqAI TTAA 4 cut(s) 30, 351, 567, 980
SatI GCNGC 4 cut(s) 108, 167, 170, 471
Sau3AI GATC 7 cut(s) 193, 317, 460, 544, 591, 864, 925
Sau96I GGNCC 1 cut(s) 685
SchI GAGTC 1 cut(s) 192
ScrFI CCNGG 6 cut(s) 322, 339, 606, 720, 904, 938
SfoI GGCGCC 1 cut(s) 25
SinI GGWCC 1 cut(s) 685
SmiMI CAYNNNNRTG 3 cut(s) 101, 501, 847
Sse9I AATT 3 cut(s) 523, 693, 977
SseBI AGGCCT 1 cut(s) 778
SsiI CCGC 6 cut(s) 108, 167, 170, 208, 401, 470
SspDI GGCGCC 1 cut(s) 23
SspMI CTAG 1 cut(s) 803
StuI AGGCCT 1 cut(s) 778
StyD4I CCNGG 6 cut(s) 320, 337, 604, 718, 902, 936
StyI CCWWGG 1 cut(s) 945
TaaI ACNGT 2 cut(s) 131, 814
TaiI ACGT 4 cut(s) 19, 300, 553, 665
TaqI TCGA 2 cut(s) 91, 196
TaqII GACCGA 1 cut(s) 929
TasI AATT 3 cut(s) 523, 693, 977
TauI GCSGC 4 cut(s) 110, 169, 172, 473
TfiI GAWTC 8 cut(s) 93, 138, 157, 211, 217, 736, 770, 917
Tru1I TTAA 4 cut(s) 30, 351, 567, 980
Tru9I TTAA 4 cut(s) 30, 351, 567, 980
TscAI CASTG 1 cut(s) 972
TseFI GTSAC 2 cut(s) 658, 940
Tsp45I GTSAC 2 cut(s) 658, 940
TspDTI ATGAA 5 cut(s) 350, 442, 552, 614, 941
TspGWI ACGGA 1 cut(s) 328
TspRI CASTG 1 cut(s) 972
Van91I CCANNNNNTGG 1 cut(s) 605
VpaK11BI GGWCC 1 cut(s) 685
VspI ATTAAT 1 cut(s) 980
XcmI CCANNNNNNNNNTGG 1 cut(s) 602
XspI CTAG 1 cut(s) 803
ZraI GACGTC 1 cut(s) 663
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.