Rh2CG109000

5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0012369
Physical Location & Seq
Reverse (-)
9643730 .. 9646655
2926 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG109000.1

Sequence Viewer

Length: 1017 bp
ATGTTGGTGTTGAAAAGGCAAGGCGCCGTTAACTTTCTCACACACCCTTCAAAGCACCACCAACCTTTGAGTCTAGGTCGTCGTCTTCATCGATTTACAGATATGGCCGCCTATCTGTACAACCATAACTGTAAGGGATTTCATGCACAAGCCCCAATTCCGCACCCAAATCATCGATTCGCGGGTCTTGTTCGCCAGATTCGGAATCGAAAGACGGCCAATTTGACCGTGAAATGTTGCTTCAATAGTAGCAATCATAACAATAATAGAGTCAAGGGCAATGTGTTTGAGAATCCGAATGGGCGGTTGGTCCGGGATTTGGATTCGGAGCTCCGGAGATCCCAGAATGGTGGCTTTCAGGGGGGTCTTAATGGGTTTCACAGCCAGACTCTGTCCCGGGATAAAATTGTGGTTGCTGTTGATGTGGATGAGGTTTTGGGCAACTTTGTGTCGGCTCTGAACAGGTTTATTGCTGATCGTTACGCGGCGAACCATACGGTTTCGGAGTACCATGTGTATGAGTTCTTCAAGATATGGAAGTGTTCCCGTGATGAAGCCGATCTTCGTGTTCATGAGTTCTTTAAAACATCATATTTCAAGACTGGGATCCACCCACTCCCAGGTGCTAAGGAGACGCTTAATAAGTTGTCAGGATTTTGTAACCTGTCAGTTGTGACTTCTCGGCAGAATGCAATCAAGGACCACACAATTCAATGGATTGAAAGTCATTTTCCAGGACTATTTCAGGAGATTCACTTTGGCAACCACTTTGCTCTACATGGAGAGTCAAGGCCCAAGTCAGAAATATGCAGGTCTCTAGGAGCAAAGGTTCTGATTGATGACAATCCAAGGTATGCACTTGAATGTGCCGAAGTTGGGATCAGGGTTCTACTTTTTGATTACGAGAACTCATATCCTTGGTGCAAGTCCGATTCTGTTGATCTACATCCCCTCGTGACCAGGGTTCATAACTGGGAAGCAGTGGAGAAGCAATTATTGGCATGGGTTACTTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NT5C

Protein Analysis

338

Amino Acids

38.71

Weight (kDa)

9.23

Isoelectric Point (pI)

27.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NT5C PF06941 136 - 330 1.8e-14 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012369)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G33140
fragaria_vesca FvH4_1g09650 FvH4_1g09650
malus_domestica MD02G1105400.v1.1 MD15G1225300.v1.1
prunus_persica Prupe.7G189700_v2.0.a1 Prupe.7G189700_v2.0.a1 Prupe.7G189700_v2.0.a1
pyrus_communis pycom15g20010
rosa_chinensis RchiOBHm_Chr2g0096491
rosa_laevigata RLG00000016644
rosa_multiflora Rmu_sc0004096.1_g000012
rosa_roxburghii Rroxscaffold_2G00145600
rosa_rugosa Rorug02G0058100
rosa_samantha Rh2AG105100 Rh2BG107200 Rh2CG109000 Rh2DG108200
rosa_wichuraiana Rw2G008120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 801
AccB1I GGYRCC 1 cut(s) 23
AccII CGCG 2 cut(s) 182, 485
AccIII TCCGGA 1 cut(s) 333
AciI CCGC 5 cut(s) 108, 161, 182, 304, 485
AclWI GGATC 4 cut(s) 333, 601, 614, 887
AcoI YGGCCR 2 cut(s) 105, 216
AcyI GRCGYC 1 cut(s) 24
AfaI GTAC 2 cut(s) 119, 509
AfiI CCNNNNNNNGG 3 cut(s) 319, 620, 876
AgsI TTSAA 8 cut(s) 13, 51, 244, 529, 598, 713, 722, 863
AjnI CCWGG 3 cut(s) 619, 733, 959
AjuI GAANNNNNNNTTGG 4 cut(s) 290, 322, 980, 1012
AloI GAACNNNNNNTCC 2 cut(s) 813, 845
AluBI AGCT 1 cut(s) 331
AluI AGCT 1 cut(s) 331
Alw21I GWGCWC 1 cut(s) 333
Alw26I GTCTC 2 cut(s) 626, 819
AlwI GGATC 4 cut(s) 333, 601, 614, 887
AlwNI CAGNNNCTG 1 cut(s) 391
Ama87I CYCGRG 1 cut(s) 396
Aor13HI TCCGGA 1 cut(s) 333
AoxI GGCC 3 cut(s) 105, 216, 791
ArsI GACNNNNNNTTYG 2 cut(s) 205, 237
AspLEI GCGC 1 cut(s) 26
AspS9I GGNCC 3 cut(s) 310, 700, 792
AsuC2I CCSGG 3 cut(s) 314, 397, 398
AvaI CYCGRG 1 cut(s) 396
AvaII GGWCC 2 cut(s) 310, 700
BamHI GGATCC 1 cut(s) 606
BanI GGYRCC 1 cut(s) 23
BanII GRGCYC 1 cut(s) 333
BarI GAAGNNNNNNTAC 2 cut(s) 509, 541
BauI CACGAG 1 cut(s) 953
BbsI GAAGAC 1 cut(s) 77
Bbv12I GWGCWC 1 cut(s) 333
BceAI ACGGC 2 cut(s) 11, 231
BciT130I CCWGG 3 cut(s) 621, 735, 961
BcnI CCSGG 3 cut(s) 314, 397, 398
BcoDI GTCTC 2 cut(s) 626, 819
BfaI CTAG 2 cut(s) 74, 818
BfoI RGCGCY 1 cut(s) 27
BfuAI ACCTGC 1 cut(s) 801
BisI GCNGC 2 cut(s) 108, 486
BlsI GCNGC 2 cut(s) 109, 487
Bme1390I CCNGG 6 cut(s) 314, 397, 398, 621, 735, 961
Bme18I GGWCC 2 cut(s) 310, 700
BmeT110I CYCGRG 1 cut(s) 396
BmgT120I GGNCC 3 cut(s) 310, 700, 792
BmiI GGNNCC 2 cut(s) 25, 608
BmrFI CCNGG 6 cut(s) 314, 397, 398, 621, 735, 961
BmrI ACTGGG 2 cut(s) 612, 982
BmuI ACTGGG 2 cut(s) 612, 982
BpiI GAAGAC 1 cut(s) 77
Bpu10I CCTNAGC 1 cut(s) 627
BpuMI CCSGG 3 cut(s) 314, 397, 398
Bsa29I ATCGAT 2 cut(s) 91, 175
BsaBI GATNNNNATC 2 cut(s) 843, 945
BsaHI GRCGYC 1 cut(s) 24
BsaI GGTCTC 1 cut(s) 819
BsaJI CCNNGG 5 cut(s) 396, 619, 848, 917, 960
BsaWI WCCGGW 1 cut(s) 333
BsaXI ACNNNNNCTCC 2 cut(s) 813, 843
Bsc4I CCNNNNNNNGG 3 cut(s) 319, 620, 876
Bse1I ACTGG 2 cut(s) 607, 977
Bse3DI GCAATG 1 cut(s) 286
Bse8I GATNNNNATC 2 cut(s) 843, 945
BseAI TCCGGA 1 cut(s) 333
BseBI CCWGG 3 cut(s) 621, 735, 961
BseCI ATCGAT 2 cut(s) 91, 175
BseDI CCNNGG 5 cut(s) 396, 619, 848, 917, 960
BseGI GGATG 2 cut(s) 433, 946
BseJI GATNNNNATC 2 cut(s) 843, 945
BseLI CCNNNNNNNGG 3 cut(s) 319, 620, 876
BseMI GCAATG 1 cut(s) 286
BseNI ACTGG 2 cut(s) 607, 977
Bsh1236I CGCG 2 cut(s) 182, 485
BshFI GGCC 3 cut(s) 107, 218, 793
BshNI GGYRCC 1 cut(s) 23
BshVI ATCGAT 2 cut(s) 91, 175
BsiHKAI GWGCWC 1 cut(s) 333
BsiHKCI CYCGRG 1 cut(s) 396
BsiSI CCGG 3 cut(s) 313, 334, 397
BslFI GGGAC 1 cut(s) 379
BslI CCNNNNNNNGG 3 cut(s) 319, 620, 876
BsmAI GTCTC 2 cut(s) 626, 819
BsmBI CGTCTC 1 cut(s) 626
BsmFI GGGAC 1 cut(s) 379
BsmI GAATGC 1 cut(s) 694
BsnI GGCC 3 cut(s) 107, 218, 793
Bso31I GGTCTC 1 cut(s) 819
BsoBI CYCGRG 1 cut(s) 396
Bsp1286I GDGCHC 1 cut(s) 333
Bsp13I TCCGGA 1 cut(s) 333
Bsp1407I TGTACA 1 cut(s) 117
Bsp143I GATC 6 cut(s) 338, 475, 559, 606, 879, 940
BspACI CCGC 5 cut(s) 108, 161, 182, 304, 485
BspANI GGCC 3 cut(s) 107, 218, 793
BspDI ATCGAT 2 cut(s) 91, 175
BspEI TCCGGA 1 cut(s) 333
BspFNI CGCG 2 cut(s) 182, 485
BspHI TCATGA 1 cut(s) 571
BspLI GGNNCC 2 cut(s) 25, 608
BspMI ACCTGC 1 cut(s) 801
BspPI GGATC 4 cut(s) 333, 601, 614, 887
BspT107I GGYRCC 1 cut(s) 23
BspTNI GGTCTC 1 cut(s) 819
BsrDI GCAATG 1 cut(s) 286
BsrGI TGTACA 1 cut(s) 117
BsrI ACTGG 2 cut(s) 607, 977
BssECI CCNNGG 5 cut(s) 396, 619, 848, 917, 960
BssMI GATC 6 cut(s) 338, 475, 559, 606, 879, 940
BssNI GRCGYC 1 cut(s) 24
BssSI CACGAG 1 cut(s) 953
BssT1I CCWWGG 2 cut(s) 848, 917
Bst2BI CACGAG 1 cut(s) 953
Bst2UI CCWGG 3 cut(s) 621, 735, 961
Bst4CI ACNGT 3 cut(s) 131, 229, 499
BstACI GRCGYC 1 cut(s) 24
BstAUI TGTACA 1 cut(s) 117
BstDEI CTNAG 1 cut(s) 627
BstF5I GGATG 2 cut(s) 433, 946
BstFNI CGCG 2 cut(s) 182, 485
BstH2I RGCGCY 1 cut(s) 27
BstHHI GCGC 1 cut(s) 26
BstKTI GATC 6 cut(s) 341, 478, 562, 609, 882, 943
BstMAI GTCTC 2 cut(s) 626, 819
BstMBI GATC 6 cut(s) 338, 475, 559, 606, 879, 940
BstNI CCWGG 3 cut(s) 621, 735, 961
BstSCI CCNGG 6 cut(s) 312, 395, 396, 619, 733, 959
BstUI CGCG 2 cut(s) 182, 485
BstV2I GAAGAC 1 cut(s) 77
BstX2I RGATCY 2 cut(s) 338, 606
BstXI CCANNNNNNTGG 1 cut(s) 350
BstYI RGATCY 2 cut(s) 338, 606
Bsu15I ATCGAT 2 cut(s) 91, 175
BsuRI GGCC 3 cut(s) 107, 218, 793
BsuTUI ATCGAT 2 cut(s) 91, 175
BtsCI GGATG 2 cut(s) 433, 946
BtsI GCAGTG 1 cut(s) 987
BtsIMutI CAGTG 1 cut(s) 987
BveI ACCTGC 1 cut(s) 801
CaiI CAGNNNCTG 1 cut(s) 391
CciI TCATGA 1 cut(s) 571
CfoI GCGC 1 cut(s) 26
Cfr13I GGNCC 3 cut(s) 310, 700, 792
Cfr9I CCCGGG 1 cut(s) 396
ClaI ATCGAT 2 cut(s) 91, 175
CseI GACGC 1 cut(s) 643
Csp6I GTAC 2 cut(s) 118, 508
CviAII CATG 5 cut(s) 143, 512, 572, 779, 1002
CviJI RGCY 9 cut(s) 107, 152, 218, 331, 354, 384, 455, 557, 793
CviKI_1 RGCY 9 cut(s) 107, 152, 218, 331, 354, 384, 455, 557, 793
CviQI GTAC 2 cut(s) 118, 508
DdeI CTNAG 1 cut(s) 627
DinI GGCGCC 1 cut(s) 25
DpnI GATC 6 cut(s) 340, 477, 561, 608, 881, 942
DpnII GATC 6 cut(s) 338, 475, 559, 606, 879, 940
DraI TTTAAA 1 cut(s) 583
EaeI YGGCCR 2 cut(s) 105, 216
Ecl136II GAGCTC 1 cut(s) 331
Eco130I CCWWGG 2 cut(s) 848, 917
Eco24I GRGCYC 1 cut(s) 333
Eco31I GGTCTC 1 cut(s) 819
Eco47I GGWCC 2 cut(s) 310, 700
Eco53kI GAGCTC 1 cut(s) 331
Eco88I CYCGRG 1 cut(s) 396
EcoICRI GAGCTC 1 cut(s) 331
EcoRII CCWGG 3 cut(s) 619, 733, 959
EcoT14I CCWWGG 2 cut(s) 848, 917
EcoT38I GRGCYC 1 cut(s) 333
EgeI GGCGCC 1 cut(s) 25
EheI GGCGCC 1 cut(s) 25
ErhI CCWWGG 2 cut(s) 848, 917
Esp3I CGTCTC 1 cut(s) 626
FaeI CATG 5 cut(s) 146, 515, 575, 782, 1005
FalI AAGNNNNNCTT 2 cut(s) 546, 578
FaqI GGGAC 1 cut(s) 379
FatI CATG 5 cut(s) 142, 511, 571, 778, 1001
FauI CCCGC 1 cut(s) 175
Fnu4HI GCNGC 2 cut(s) 108, 486
FokI GGATG 2 cut(s) 440, 933
FriOI GRGCYC 1 cut(s) 333
Fsp4HI GCNGC 2 cut(s) 108, 486
FspBI CTAG 2 cut(s) 74, 818
GlaI GCGC 1 cut(s) 25
GluI GCNGC 2 cut(s) 108, 486
HaeII RGCGCY 1 cut(s) 27
HaeIII GGCC 3 cut(s) 107, 218, 793
HapII CCGG 3 cut(s) 313, 334, 397
HgaI GACGC 1 cut(s) 643
HhaI GCGC 1 cut(s) 26
Hin1I GRCGYC 1 cut(s) 24
Hin1II CATG 5 cut(s) 146, 515, 575, 782, 1005
Hin6I GCGC 1 cut(s) 24
HinP1I GCGC 1 cut(s) 24
HincII GTYRAC 1 cut(s) 31
HindII GTYRAC 1 cut(s) 31
HpaI GTTAAC 1 cut(s) 31
HpaII CCGG 3 cut(s) 313, 334, 397
Hpy166II GTNNAC 1 cut(s) 31
Hpy188I TCNGA 8 cut(s) 204, 297, 328, 459, 505, 802, 834, 931
Hpy188III TCNNGA 7 cut(s) 334, 529, 572, 598, 651, 746, 955
Hpy8I GTNNAC 1 cut(s) 31
Hpy99I CGWCG 1 cut(s) 84
HpyAV CCTTC 1 cut(s) 57
HpyCH4III ACNGT 3 cut(s) 131, 229, 499
HpyCH4V TGCA 5 cut(s) 146, 692, 810, 857, 924
HpyF3I CTNAG 1 cut(s) 627
Hsp92I GRCGYC 1 cut(s) 24
Hsp92II CATG 5 cut(s) 146, 515, 575, 782, 1005
HspAI GCGC 1 cut(s) 24
KasI GGCGCC 1 cut(s) 23
Kpn2I TCCGGA 1 cut(s) 333
KspAI GTTAAC 1 cut(s) 31
Kzo9I GATC 6 cut(s) 338, 475, 559, 606, 879, 940
LmnI GCTCC 3 cut(s) 328, 336, 821
MaeI CTAG 2 cut(s) 74, 818
MaeIII GTNAC 5 cut(s) 479, 659, 673, 955, 1006
MalI GATC 6 cut(s) 340, 477, 561, 608, 881, 942
MboI GATC 6 cut(s) 338, 475, 559, 606, 879, 940
MboII GAAGA 3 cut(s) 77, 517, 554
MflI RGATCY 2 cut(s) 338, 606
MhlI GDGCHC 1 cut(s) 333
MluCI AATT 5 cut(s) 156, 220, 405, 708, 992
Mly113I GGCGCC 1 cut(s) 24
MlyI GAGTC 4 cut(s) 79, 279, 382, 794
MnlI CCTC 2 cut(s) 424, 962
MroI TCCGGA 1 cut(s) 333
MseI TTAA 4 cut(s) 30, 369, 582, 639
MslI CAYNNNNRTG 2 cut(s) 516, 862
MspI CCGG 3 cut(s) 313, 334, 397
MspR9I CCNGG 6 cut(s) 314, 397, 398, 621, 735, 961
Mva1269I GAATGC 1 cut(s) 694
MvaI CCWGG 3 cut(s) 621, 735, 961
MvnI CGCG 2 cut(s) 182, 485
NarI GGCGCC 1 cut(s) 24
NciI CCSGG 3 cut(s) 314, 397, 398
NdeII GATC 6 cut(s) 338, 475, 559, 606, 879, 940
NlaIII CATG 5 cut(s) 146, 515, 575, 782, 1005
NlaIV GGNNCC 2 cut(s) 25, 608
NmeAIII GCCGAG 1 cut(s) 661
NmuCI GTSAC 2 cut(s) 673, 955
PagI TCATGA 1 cut(s) 571
PcsI WCGNNNNNNNCGW 1 cut(s) 88
PctI GAATGC 1 cut(s) 694
PfeI GAWTC 7 cut(s) 177, 199, 205, 292, 323, 751, 932
PflFI GACNNNGTC 1 cut(s) 391
PfoI TCCNGGA 2 cut(s) 312, 733
PkrI GCNGC 2 cut(s) 109, 487
PleI GAGTC 4 cut(s) 78, 278, 382, 793
PluTI GGCGCC 1 cut(s) 27
PpsI GAGTC 4 cut(s) 78, 278, 382, 793
Psp124BI GAGCTC 1 cut(s) 333
Psp6I CCWGG 3 cut(s) 619, 733, 959
PspGI CCWGG 3 cut(s) 619, 733, 959
PspN4I GGNNCC 2 cut(s) 25, 608
PspPI GGNCC 3 cut(s) 310, 700, 792
PstNI CAGNNNCTG 1 cut(s) 391
PsuI RGATCY 2 cut(s) 338, 606
PsyI GACNNNGTC 1 cut(s) 391
RsaI GTAC 2 cut(s) 119, 509
RsaNI GTAC 2 cut(s) 118, 508
RseI CAYNNNNRTG 2 cut(s) 516, 862
SacI GAGCTC 1 cut(s) 333
SaqAI TTAA 4 cut(s) 30, 369, 582, 639
SatI GCNGC 2 cut(s) 108, 486
Sau3AI GATC 6 cut(s) 338, 475, 559, 606, 879, 940
Sau96I GGNCC 3 cut(s) 310, 700, 792
SchI GAGTC 4 cut(s) 79, 279, 382, 794
ScrFI CCNGG 6 cut(s) 314, 397, 398, 621, 735, 961
SduI GDGCHC 1 cut(s) 333
SfoI GGCGCC 1 cut(s) 25
SinI GGWCC 2 cut(s) 310, 700
SmaI CCCGGG 1 cut(s) 398
SmiMI CAYNNNNRTG 2 cut(s) 516, 862
Sse9I AATT 5 cut(s) 156, 220, 405, 708, 992
SsiI CCGC 5 cut(s) 108, 161, 182, 304, 485
SspDI GGCGCC 1 cut(s) 23
SspMI CTAG 2 cut(s) 74, 818
SstI GAGCTC 1 cut(s) 333
StyD4I CCNGG 6 cut(s) 312, 395, 396, 619, 733, 959
StyI CCWWGG 2 cut(s) 848, 917
TaaI ACNGT 3 cut(s) 131, 229, 499
TaqI TCGA 3 cut(s) 91, 175, 208
TasI AATT 5 cut(s) 156, 220, 405, 708, 992
TatI WGTACW 1 cut(s) 117
TauI GCSGC 2 cut(s) 110, 488
TfiI GAWTC 7 cut(s) 177, 199, 205, 292, 323, 751, 932
Tru1I TTAA 4 cut(s) 30, 369, 582, 639
Tru9I TTAA 4 cut(s) 30, 369, 582, 639
TscAI CASTG 1 cut(s) 987
TseFI GTSAC 2 cut(s) 673, 955
Tsp45I GTSAC 2 cut(s) 673, 955
TspDTI ATGAA 6 cut(s) 77, 131, 560, 567, 956, 1002
TspMI CCCGGG 1 cut(s) 396
TspRI CASTG 1 cut(s) 987
Tth111I GACNNNGTC 1 cut(s) 391
VpaK11BI GGWCC 2 cut(s) 310, 700
XmaI CCCGGG 1 cut(s) 396
XspI CTAG 2 cut(s) 74, 818
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.