pycom15g20010

5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0012369
Physical Location & Seq
Reverse (-)
14309491 .. 14311909
2419 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g20010.4

Sequence Viewer

Length: 1095 bp
ATGTTGTTGTTGAGAAGGCAAGGCGTCGATCGCTTCCTCTTTGCAAGCTCAAAGCACCGACCTTTGCTCCTCCATCGCCGCCAGCACCTTACAGGGGCCATGGCGGCTGCTTTTACGGGTAGCCATAGTGGTTGCAGTGGGTTTCATTCCCAAGCTCAATGGCCGCCGTCCCATTTTTCCGCGGACCATTCTTGCAAGTTTGCCAATTTTCCGGGGAAAGCTGGTACTTTTCCTGGGAATCTGAGGAATACAAGCATTGGATGCAATTTTGCTGTGAAGGGGTGCTTGCAATCTCAGCATCATCCCCACCATCAGTCTCATGGCAATAGCATTAAGCGTCATCCCAATGCTCAGTTGGTTCGTGATCATGAACTGGAACTCCGCAGCCCGGATGCTGTTGGATTGGCCTCCTCAAATGGTTGCCAGGAGCACGGAGGCCGGTCCAGAATCCCACACCATCCTTTGCCCGGTGATAAAATCATTGTCGCAGTCGATGTGGACGAGGTATTGGGAAACTTTGTCTCGGCTCTCAACCGGTTTATTGCTGATCGTTACTCTTCCCACCATTCAGTTTCAGATTACCATGTGTACGAGTTCTTCAAGATATGGAACTGTTCACGTGATGAAGCCGATATTCGTGTTCATGAGTTCTTTAAAACATCATATTTCAAGGCCGGGATCCACCCACTTCCAGGTGCTCAGGAGACCATTCATAAGTTGTCAGATTTTTGTGACCTGTCAGTTGTGACGTCTCGGCAGAATGCAATTAAGGACCACACCATTCAATGGATCGAACAACATTTTCCAGGGCTGTTTCAGGAGATTCACTTTGGCAACCACTTTGCTTTAAATGGAGAGTCCAGGCCTAAGTCAGAAATATGCAGGTCCCTGGGAGCAATGGTTCTAATTGATGACAATCCAAGATATGCACTCGAATGTGCCGAGGTGGGGATCAGAGTTCTACTTTTTGATTATGAGAACTCATATCCTTGGTGCAAGACCGAGTCTATCGATCAACACCCCCTGGTCACCAGGGTTCATAACTGGGAAGAAGTCGAGAAGCAGCTGATGACAATAAATAGCATAAATTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NT5C

Protein Analysis

365

Amino Acids

41.14

Weight (kDa)

7.18

Isoelectric Point (pI)

35.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012369)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G33140
fragaria_vesca FvH4_1g09650 FvH4_1g09650
malus_domestica MD02G1105400.v1.1 MD15G1225300.v1.1
prunus_persica Prupe.7G189700_v2.0.a1 Prupe.7G189700_v2.0.a1 Prupe.7G189700_v2.0.a1
pyrus_communis pycom15g20010
rosa_chinensis RchiOBHm_Chr2g0096491
rosa_laevigata RLG00000016644
rosa_multiflora Rmu_sc0004096.1_g000012
rosa_roxburghii Rroxscaffold_2G00145600
rosa_rugosa Rorug02G0058100
rosa_samantha Rh2AG105100 Rh2BG107200 Rh2CG109000 Rh2DG108200
rosa_wichuraiana Rw2G008120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 752
Acc36I ACCTGC 1 cut(s) 873
AccB7I CCANNNNNTGG 1 cut(s) 786
AccII CGCG 1 cut(s) 182
AciI CCGC 6 cut(s) 79, 104, 164, 180, 182, 382
AclWI GGATC 4 cut(s) 673, 686, 797, 959
AcoI YGGCCR 1 cut(s) 161
AcsI RAATTY 1 cut(s) 1087
AcvI CACGTG 1 cut(s) 620
AcyI GRCGYC 2 cut(s) 24, 749
AfaI GTAC 2 cut(s) 226, 590
AfiI CCNNNNNNNGG 6 cut(s) 94, 388, 467, 692, 786, 948
AgeI ACCGGT 1 cut(s) 534
AgsI TTSAA 3 cut(s) 601, 670, 785
AjnI CCWGG 8 cut(s) 232, 423, 691, 805, 860, 888, 1023, 1031
AloI GAACNNNNNNTCC 4 cut(s) 363, 395, 885, 917
AluBI AGCT 4 cut(s) 48, 155, 221, 1066
AluI AGCT 4 cut(s) 48, 155, 221, 1066
Alw21I GWGCWC 2 cut(s) 432, 700
Alw26I GTCTC 4 cut(s) 321, 526, 698, 756
AlwI GGATC 4 cut(s) 673, 686, 797, 959
AoxI GGCC 6 cut(s) 96, 161, 405, 436, 672, 863
ApeKI GCWGC 3 cut(s) 107, 384, 1063
ApoI RAATTY 1 cut(s) 1087
AsiGI ACCGGT 1 cut(s) 534
AspS9I GGNCC 5 cut(s) 96, 184, 441, 772, 885
AsuC2I CCSGG 4 cut(s) 213, 389, 468, 676
AsuHPI GGTGA 2 cut(s) 482, 1021
AvaII GGWCC 4 cut(s) 184, 441, 772, 885
BamHI GGATCC 1 cut(s) 678
BarI GAAGNNNNNNTAC 2 cut(s) 581, 613
BbrPI CACGTG 1 cut(s) 620
Bbv12I GWGCWC 2 cut(s) 432, 700
BbvI GCAGC 3 cut(s) 94, 396, 1075
BccI CCATC 3 cut(s) 81, 318, 465
BceAI ACGGC 1 cut(s) 151
BciT130I CCWGG 8 cut(s) 234, 425, 693, 807, 862, 890, 1025, 1033
BclI TGATCA 1 cut(s) 364
BcnI CCSGG 4 cut(s) 213, 389, 468, 676
BcoDI GTCTC 4 cut(s) 321, 526, 698, 756
BfuAI ACCTGC 1 cut(s) 873
BglI GCCNNNNNGGC 1 cut(s) 104
BisI GCNGC 6 cut(s) 79, 105, 108, 164, 385, 1064
BlsI GCNGC 6 cut(s) 80, 106, 109, 165, 386, 1065
Bme18I GGWCC 4 cut(s) 184, 441, 772, 885
BmgT120I GGNCC 5 cut(s) 96, 184, 441, 772, 885
BmiI GGNNCC 3 cut(s) 97, 680, 887
BmrI ACTGGG 1 cut(s) 1054
BmsI GCATC 3 cut(s) 251, 307, 382
BmuI ACTGGG 1 cut(s) 1054
Bpu10I CCTNAGC 1 cut(s) 699
BpuMI CCSGG 4 cut(s) 213, 389, 468, 676
Bsa29I ATCGAT 1 cut(s) 1011
BsaAI YACGTR 1 cut(s) 620
BsaBI GATNNNNATC 1 cut(s) 915
BsaHI GRCGYC 2 cut(s) 24, 749
BsaI GGTCTC 1 cut(s) 698
BsaWI WCCGGW 1 cut(s) 534
BsaXI ACNNNNNCTCC 6 cut(s) 51, 81, 363, 393, 885, 915
Bsc4I CCNNNNNNNGG 6 cut(s) 94, 388, 467, 692, 786, 948
Bse118I RCCGGY 2 cut(s) 438, 534
Bse1I ACTGG 2 cut(s) 378, 1049
Bse3DI GCAATG 1 cut(s) 903
Bse8I GATNNNNATC 1 cut(s) 915
BseBI CCWGG 8 cut(s) 234, 425, 693, 807, 862, 890, 1025, 1033
BseCI ATCGAT 1 cut(s) 1011
BseGI GGATG 5 cut(s) 266, 301, 340, 397, 457
BseJI GATNNNNATC 1 cut(s) 915
BseLI CCNNNNNNNGG 6 cut(s) 94, 388, 467, 692, 786, 948
BseMI GCAATG 1 cut(s) 903
BseMII CTCAG 4 cut(s) 233, 308, 365, 713
BseNI ACTGG 2 cut(s) 378, 1049
BseRI GAGGAG 2 cut(s) 59, 400
BseXI GCAGC 3 cut(s) 94, 396, 1075
Bsh1236I CGCG 1 cut(s) 182
Bsh1285I CGRYCG 1 cut(s) 31
BshFI GGCC 6 cut(s) 98, 163, 407, 438, 674, 865
BshTI ACCGGT 1 cut(s) 534
BshVI ATCGAT 1 cut(s) 1011
BsiEI CGRYCG 1 cut(s) 31
BsiHKAI GWGCWC 2 cut(s) 432, 700
BsiSI CCGG 6 cut(s) 212, 389, 439, 468, 535, 675
BslFI GGGAC 2 cut(s) 154, 871
BslI CCNNNNNNNGG 6 cut(s) 94, 388, 467, 692, 786, 948
BsmAI GTCTC 4 cut(s) 321, 526, 698, 756
BsmBI CGTCTC 1 cut(s) 756
BsmFI GGGAC 2 cut(s) 154, 871
BsmI GAATGC 1 cut(s) 766
BsnI GGCC 6 cut(s) 98, 163, 407, 438, 674, 865
Bso31I GGTCTC 1 cut(s) 698
Bsp1286I GDGCHC 2 cut(s) 432, 700
Bsp143I GATC 7 cut(s) 28, 364, 547, 678, 789, 951, 1012
Bsp19I CCATGG 1 cut(s) 99
BspACI CCGC 6 cut(s) 79, 104, 164, 180, 182, 382
BspANI GGCC 6 cut(s) 98, 163, 407, 438, 674, 865
BspCNI CTCAG 4 cut(s) 234, 307, 364, 712
BspDI ATCGAT 1 cut(s) 1011
BspFNI CGCG 1 cut(s) 182
BspHI TCATGA 2 cut(s) 367, 643
BspLI GGNNCC 3 cut(s) 97, 680, 887
BspMI ACCTGC 1 cut(s) 873
BspPI GGATC 4 cut(s) 673, 686, 797, 959
BspTNI GGTCTC 1 cut(s) 698
BsrDI GCAATG 1 cut(s) 903
BsrFI RCCGGY 2 cut(s) 438, 534
BsrI ACTGG 2 cut(s) 378, 1049
BssAI RCCGGY 2 cut(s) 438, 534
BssMI GATC 7 cut(s) 28, 364, 547, 678, 789, 951, 1012
BssNI GRCGYC 2 cut(s) 24, 749
BssT1I CCWWGG 2 cut(s) 99, 989
Bst2UI CCWGG 8 cut(s) 234, 425, 693, 807, 862, 890, 1025, 1033
Bst4CI ACNGT 1 cut(s) 614
Bst6I CTCTTC 1 cut(s) 562
BstACI GRCGYC 2 cut(s) 24, 749
BstAPI GCANNNNNTGC 1 cut(s) 261
BstBAI YACGTR 1 cut(s) 620
BstC8I GCNNGC 3 cut(s) 46, 83, 287
BstDEI CTNAG 5 cut(s) 242, 294, 351, 699, 867
BstDSI CCRYGG 2 cut(s) 99, 180
BstEII GGTNACC 1 cut(s) 1027
BstF5I GGATG 5 cut(s) 266, 301, 340, 397, 457
BstFNI CGCG 1 cut(s) 182
BstKTI GATC 7 cut(s) 31, 367, 550, 681, 792, 954, 1015
BstMAI GTCTC 4 cut(s) 321, 526, 698, 756
BstMBI GATC 7 cut(s) 28, 364, 547, 678, 789, 951, 1012
BstMCI CGRYCG 1 cut(s) 31
BstMWI GCNNNNNNNGC 4 cut(s) 30, 104, 261, 295
BstNI CCWGG 8 cut(s) 234, 425, 693, 807, 862, 890, 1025, 1033
BstPI GGTNACC 1 cut(s) 1027
BstUI CGCG 1 cut(s) 182
BstV1I GCAGC 3 cut(s) 94, 396, 1075
BstX2I RGATCY 1 cut(s) 678
BstYI RGATCY 1 cut(s) 678
Bsu15I ATCGAT 1 cut(s) 1011
BsuRI GGCC 6 cut(s) 98, 163, 407, 438, 674, 865
BsuTUI ATCGAT 1 cut(s) 1011
BtgI CCRYGG 2 cut(s) 99, 180
BtgZI GCGATG 1 cut(s) 59
BtsCI GGATG 5 cut(s) 266, 301, 340, 397, 457
BtsI GCAGTG 1 cut(s) 142
BtsIMutI CAGTG 1 cut(s) 142
BveI ACCTGC 1 cut(s) 873
Cac8I GCNNGC 3 cut(s) 46, 83, 287
CciI TCATGA 2 cut(s) 367, 643
Cfr10I RCCGGY 2 cut(s) 438, 534
Cfr13I GGNCC 5 cut(s) 96, 184, 441, 772, 885
Cfr42I CCGCGG 1 cut(s) 183
ClaI ATCGAT 1 cut(s) 1011
CseI GACGC 2 cut(s) 13, 326
Csp6I GTAC 2 cut(s) 225, 589
CspAI ACCGGT 1 cut(s) 534
CviAII CATG 5 cut(s) 100, 320, 368, 584, 644
CviQI GTAC 2 cut(s) 225, 589
DdeI CTNAG 5 cut(s) 242, 294, 351, 699, 867
DpnI GATC 7 cut(s) 30, 366, 549, 680, 791, 953, 1014
DpnII GATC 7 cut(s) 28, 364, 547, 678, 789, 951, 1012
DraI TTTAAA 2 cut(s) 655, 849
EaeI YGGCCR 1 cut(s) 161
Eam1104I CTCTTC 1 cut(s) 562
EarI CTCTTC 1 cut(s) 562
Eco130I CCWWGG 2 cut(s) 99, 989
Eco147I AGGCCT 1 cut(s) 865
Eco31I GGTCTC 1 cut(s) 698
Eco47I GGWCC 4 cut(s) 184, 441, 772, 885
Eco72I CACGTG 1 cut(s) 620
Eco91I GGTNACC 1 cut(s) 1027
EcoO109I RGGNCCY 1 cut(s) 885
EcoO65I GGTNACC 1 cut(s) 1027
EcoRII CCWGG 8 cut(s) 232, 423, 691, 805, 860, 888, 1023, 1031
EcoT14I CCWWGG 2 cut(s) 99, 989
ErhI CCWWGG 2 cut(s) 99, 989
Esp3I CGTCTC 1 cut(s) 756
FaeI CATG 5 cut(s) 103, 323, 371, 587, 647
FalI AAGNNNNNCTT 2 cut(s) 269, 301
FaqI GGGAC 2 cut(s) 154, 871
FatI CATG 5 cut(s) 99, 319, 367, 583, 643
FbaI TGATCA 1 cut(s) 364
Fnu4HI GCNGC 6 cut(s) 79, 105, 108, 164, 385, 1064
FokI GGATG 5 cut(s) 273, 288, 327, 404, 444
Fsp4HI GCNGC 6 cut(s) 79, 105, 108, 164, 385, 1064
GluI GCNGC 6 cut(s) 79, 105, 108, 164, 385, 1064
HaeIII GGCC 6 cut(s) 98, 163, 407, 438, 674, 865
HapII CCGG 6 cut(s) 212, 389, 439, 468, 535, 675
HgaI GACGC 2 cut(s) 13, 326
Hin1I GRCGYC 2 cut(s) 24, 749
Hin1II CATG 5 cut(s) 103, 323, 371, 587, 647
HinfI GANTC 5 cut(s) 238, 447, 823, 857, 1004
HpaII CCGG 6 cut(s) 212, 389, 439, 468, 535, 675
HphI GGTGA 2 cut(s) 482, 1021
Hpy166II GTNNAC 3 cut(s) 499, 589, 617
Hpy188I TCNGA 5 cut(s) 243, 577, 724, 874, 956
Hpy188III TCNNGA 8 cut(s) 362, 368, 444, 601, 644, 701, 818, 1057
Hpy8I GTNNAC 3 cut(s) 499, 589, 617
Hpy99I CGWCG 1 cut(s) 29
HpyAV CCTTC 2 cut(s) 9, 271
HpyCH4III ACNGT 1 cut(s) 614
HpyCH4IV ACGT 2 cut(s) 619, 749
HpyCH4V TGCA 9 cut(s) 44, 135, 195, 264, 289, 764, 882, 929, 996
HpyF10VI GCNNNNNNNGC 4 cut(s) 30, 104, 261, 295
HpyF3I CTNAG 5 cut(s) 242, 294, 351, 699, 867
HpySE526I ACGT 2 cut(s) 619, 749
Hsp92I GRCGYC 2 cut(s) 24, 749
Hsp92II CATG 5 cut(s) 103, 323, 371, 587, 647
Ksp22I TGATCA 1 cut(s) 364
KspI CCGCGG 1 cut(s) 183
Kzo9I GATC 7 cut(s) 28, 364, 547, 678, 789, 951, 1012
LmnI GCTCC 3 cut(s) 72, 427, 893
Lsp1109I GCAGC 3 cut(s) 94, 396, 1075
LweI GCATC 3 cut(s) 251, 307, 382
MaeII ACGT 2 cut(s) 619, 749
MaeIII GTNAC 4 cut(s) 551, 731, 745, 1027
MalI GATC 7 cut(s) 30, 366, 549, 680, 791, 953, 1014
MboI GATC 7 cut(s) 28, 364, 547, 678, 789, 951, 1012
MboII GAAGA 3 cut(s) 549, 589, 1061
MflI RGATCY 1 cut(s) 678
MhlI GDGCHC 2 cut(s) 432, 700
MluCI AATT 5 cut(s) 205, 265, 765, 906, 1087
MlyI GAGTC 2 cut(s) 866, 1013
MmeI TCCRAC 1 cut(s) 379
MnlI CCTC 8 cut(s) 47, 80, 237, 418, 421, 428, 496, 937
MseI TTAA 4 cut(s) 333, 654, 768, 848
MslI CAYNNNNRTG 2 cut(s) 345, 934
MspA1I CMGCKG 2 cut(s) 182, 1066
MspI CCGG 6 cut(s) 212, 389, 439, 468, 535, 675
Mva1269I GAATGC 1 cut(s) 766
MvaI CCWGG 8 cut(s) 234, 425, 693, 807, 862, 890, 1025, 1033
MvnI CGCG 1 cut(s) 182
MwoI GCNNNNNNNGC 4 cut(s) 30, 104, 261, 295
NciI CCSGG 4 cut(s) 213, 389, 468, 676
NcoI CCATGG 1 cut(s) 99
NdeII GATC 7 cut(s) 28, 364, 547, 678, 789, 951, 1012
NlaIII CATG 5 cut(s) 103, 323, 371, 587, 647
NlaIV GGNNCC 3 cut(s) 97, 680, 887
NmeAIII GCCGAG 3 cut(s) 503, 733, 967
NmuCI GTSAC 3 cut(s) 731, 745, 1027
PagI TCATGA 2 cut(s) 367, 643
PasI CCCWGGG 1 cut(s) 889
PceI AGGCCT 1 cut(s) 865
PcsI WCGNNNNNNNCGW 2 cut(s) 498, 939
PctI GAATGC 1 cut(s) 766
PfeI GAWTC 3 cut(s) 238, 447, 823
PflFI GACNNNGTC 1 cut(s) 1003
PflMI CCANNNNNTGG 1 cut(s) 786
PinAI ACCGGT 1 cut(s) 534
PkrI GCNGC 6 cut(s) 80, 106, 109, 165, 386, 1065
Ple19I CGATCG 1 cut(s) 31
PleI GAGTC 2 cut(s) 865, 1012
PmaCI CACGTG 1 cut(s) 620
PmlI CACGTG 1 cut(s) 620
PpsI GAGTC 2 cut(s) 865, 1012
Ppu21I YACGTR 1 cut(s) 620
PpuMI RGGWCCY 1 cut(s) 885
Psp5II RGGWCCY 1 cut(s) 885
Psp6I CCWGG 8 cut(s) 232, 423, 691, 805, 860, 888, 1023, 1031
PspCI CACGTG 1 cut(s) 620
PspEI GGTNACC 1 cut(s) 1027
PspGI CCWGG 8 cut(s) 232, 423, 691, 805, 860, 888, 1023, 1031
PspN4I GGNNCC 3 cut(s) 97, 680, 887
PspPI GGNCC 5 cut(s) 96, 184, 441, 772, 885
PspPPI RGGWCCY 1 cut(s) 885
PsuI RGATCY 1 cut(s) 678
PsyI GACNNNGTC 1 cut(s) 1003
PvuI CGATCG 1 cut(s) 31
PvuII CAGCTG 1 cut(s) 1066
RsaI GTAC 2 cut(s) 226, 590
RsaNI GTAC 2 cut(s) 225, 589
RseI CAYNNNNRTG 2 cut(s) 345, 934
SacII CCGCGG 1 cut(s) 183
SaqAI TTAA 4 cut(s) 333, 654, 768, 848
SatI GCNGC 6 cut(s) 79, 105, 108, 164, 385, 1064
Sau3AI GATC 7 cut(s) 28, 364, 547, 678, 789, 951, 1012
Sau96I GGNCC 5 cut(s) 96, 184, 441, 772, 885
SchI GAGTC 2 cut(s) 866, 1013
SduI GDGCHC 2 cut(s) 432, 700
SfaNI GCATC 3 cut(s) 251, 307, 382
Sfr303I CCGCGG 1 cut(s) 183
SgrBI CCGCGG 1 cut(s) 183
SinI GGWCC 4 cut(s) 184, 441, 772, 885
SmiMI CAYNNNNRTG 2 cut(s) 345, 934
Sse9I AATT 5 cut(s) 205, 265, 765, 906, 1087
SseBI AGGCCT 1 cut(s) 865
SsiI CCGC 6 cut(s) 79, 104, 164, 180, 182, 382
StuI AGGCCT 1 cut(s) 865
StyI CCWWGG 2 cut(s) 99, 989
TaaI ACNGT 1 cut(s) 614
TaiI ACGT 2 cut(s) 622, 752
TaqI TCGA 6 cut(s) 27, 492, 792, 933, 1011, 1056
TaqII GACCGA 1 cut(s) 1016
TasI AATT 5 cut(s) 205, 265, 765, 906, 1087
TauI GCSGC 3 cut(s) 81, 107, 166
TfiI GAWTC 3 cut(s) 238, 447, 823
Tru1I TTAA 4 cut(s) 333, 654, 768, 848
Tru9I TTAA 4 cut(s) 333, 654, 768, 848
TscAI CASTG 1 cut(s) 142
TseFI GTSAC 3 cut(s) 731, 745, 1027
TseI GCWGC 3 cut(s) 107, 384, 1063
Tsp45I GTSAC 3 cut(s) 731, 745, 1027
TspDTI ATGAA 7 cut(s) 134, 384, 632, 639, 701, 1028, 1080
TspGWI ACGGA 1 cut(s) 447
TspRI CASTG 1 cut(s) 142
Tth111I GACNNNGTC 1 cut(s) 1003
Van91I CCANNNNNTGG 1 cut(s) 786
VpaK11BI GGWCC 4 cut(s) 184, 441, 772, 885
XapI RAATTY 1 cut(s) 1087
XcmI CCANNNNNNNNNTGG 2 cut(s) 317, 352
ZraI GACGTC 1 cut(s) 750
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.