FvH4_1g11230

Methyltransferase-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0007936
Physical Location & Seq
Reverse (-)
6129135 .. 6131441
2307 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g11230.t2

Sequence Viewer

Length: 678 bp
ATGTCGGAGATGGAAGGCAGTGGATCGGAGATGACGACAATATCACGTCATCATTTCGGAGATGACCCGGACCAGCCGGACTTCTCCGTGTCCATAATCGAGAATATAAAAGAAGAGTATGGGCTGTTCGTGTGGCCTTGCAGTGTAGTTCTGGCGGAGTATGTTTGGCAGCAAAGGCTGCGTTTTGCCGGAGCTGCTGTGGTTGAGCTTGGTGCTGGGACTTCATTGCCTGGTTTGGTTGCCGCCAAAGTTGGCGCTGACGTCACTCTTACTGATGAGTCCAGTAGACTGGAGGTGCTGAGCAACATGAGAAGTGTTATTGAACTTAACAAACTGCAATGTAATGTAGTGGGATTGACATGGGGAGTTTGGGATGCATCTGTGTTCAGTTTACACCCGAAATTTATTCTTGGAGCTGATGTATTGTATGATGCTAAAGCCTTTGATGACCTCTTTGCAACTGTGGCATATCTGCTCCAGAATTCTCCTGGTTCGGTCTTCATAACAACGTACCACAATCGAAGTGGGCATCATCTTATTGAATTCTTGATGGTCAAATGGGGATTGAAGTGTACAAGGCTTCTGGACGCATTTTCATTTATGCCGTTGTGCAAGTCATCCGGGCTAAGTGGAAATCTTCAATTGGCAGAAATTGTTCTGGACAGTGAACGAAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_16

Protein Analysis

226

Amino Acids

24.77

Weight (kDa)

4.89

Isoelectric Point (pI)

43.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_16 PF10294 29 - 175 4.6e-21 Lysine methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 264
AccI GTMKAC 1 cut(s) 286
AciI CCGC 2 cut(s) 155, 243
AclWI GGATC 1 cut(s) 31
AcsI RAATTY 3 cut(s) 401, 481, 542
AcyI GRCGYC 1 cut(s) 261
AfaI GTAC 2 cut(s) 512, 574
AgsI TTSAA 4 cut(s) 323, 542, 568, 641
AjiI CACGTC 1 cut(s) 47
AjnI CCWGG 2 cut(s) 229, 487
AluBI AGCT 4 cut(s) 194, 208, 416, 675
AluI AGCT 4 cut(s) 194, 208, 416, 675
AlwI GGATC 1 cut(s) 31
AoxI GGCC 1 cut(s) 134
ApeKI GCWGC 3 cut(s) 169, 178, 194
ApoI RAATTY 3 cut(s) 401, 481, 542
Asp700I GAANNNNTTC 1 cut(s) 654
AspLEI GCGC 1 cut(s) 257
AspS9I GGNCC 1 cut(s) 70
AsuC2I CCSGG 2 cut(s) 68, 622
AvaII GGWCC 1 cut(s) 70
BbsI GAAGAC 1 cut(s) 490
BbvI GCAGC 3 cut(s) 165, 181, 181
BccI CCATC 2 cut(s) 4, 544
BceAI ACGGC 1 cut(s) 589
BciT130I CCWGG 2 cut(s) 231, 489
BcnI CCSGG 2 cut(s) 68, 622
BfoI RGCGCY 1 cut(s) 258
BisI GCNGC 4 cut(s) 170, 179, 195, 243
BlpI GCTNAGC 1 cut(s) 299
BlsI GCNGC 4 cut(s) 171, 180, 196, 244
Bme1390I CCNGG 4 cut(s) 68, 231, 489, 622
Bme18I GGWCC 1 cut(s) 70
BmgBI CACGTC 1 cut(s) 47
BmgT120I GGNCC 1 cut(s) 70
BmrFI CCNGG 4 cut(s) 68, 231, 489, 622
BmsI GCATC 4 cut(s) 364, 386, 421, 538
BpiI GAAGAC 1 cut(s) 490
BpmI CTGGAG 2 cut(s) 311, 461
Bpu1102I GCTNAGC 1 cut(s) 299
BpuMI CCSGG 2 cut(s) 68, 622
BsaHI GRCGYC 1 cut(s) 261
BsaXI ACNNNNNCTCC 4 cut(s) 183, 213, 405, 435
Bse1I ACTGG 2 cut(s) 282, 294
Bse3DI GCAATG 2 cut(s) 224, 344
BseBI CCWGG 2 cut(s) 231, 489
BseGI GGATG 2 cut(s) 379, 617
BseMI GCAATG 2 cut(s) 224, 344
BseMII CTCAG 1 cut(s) 290
BseNI ACTGG 2 cut(s) 282, 294
BseXI GCAGC 3 cut(s) 165, 181, 181
BseYI CCCAGC 1 cut(s) 215
BshFI GGCC 1 cut(s) 136
BsiSI CCGG 4 cut(s) 68, 77, 189, 621
BslFI GGGAC 1 cut(s) 232
BsmFI GGGAC 1 cut(s) 232
BsnI GGCC 1 cut(s) 136
Bsp1407I TGTACA 1 cut(s) 572
Bsp143I GATC 1 cut(s) 23
Bsp1720I GCTNAGC 1 cut(s) 299
BspACI CCGC 2 cut(s) 155, 243
BspANI GGCC 1 cut(s) 136
BspCNI CTCAG 1 cut(s) 291
BspPI GGATC 1 cut(s) 31
BsrDI GCAATG 2 cut(s) 224, 344
BsrGI TGTACA 1 cut(s) 572
BsrI ACTGG 2 cut(s) 282, 294
BssMI GATC 1 cut(s) 23
BssNI GRCGYC 1 cut(s) 261
Bst2UI CCWGG 2 cut(s) 231, 489
Bst4CI ACNGT 2 cut(s) 463, 665
Bst6I CTCTTC 1 cut(s) 108
BstACI GRCGYC 1 cut(s) 261
BstAPI GCANNNNNTGC 1 cut(s) 178
BstAUI TGTACA 1 cut(s) 572
BstDEI CTNAG 2 cut(s) 299, 626
BstF5I GGATG 2 cut(s) 379, 617
BstH2I RGCGCY 1 cut(s) 258
BstHHI GCGC 1 cut(s) 257
BstKTI GATC 1 cut(s) 26
BstMBI GATC 1 cut(s) 23
BstMWI GCNNNNNNNGC 4 cut(s) 175, 178, 194, 464
BstNI CCWGG 2 cut(s) 231, 489
BstSCI CCNGG 4 cut(s) 66, 229, 487, 620
BstV1I GCAGC 3 cut(s) 165, 181, 181
BstV2I GAAGAC 1 cut(s) 490
BstXI CCANNNNNNTGG 1 cut(s) 289
BsuRI GGCC 1 cut(s) 136
BtrI CACGTC 1 cut(s) 47
BtsCI GGATG 2 cut(s) 379, 617
BtsI GCAGTG 2 cut(s) 25, 148
BtsIMutI CAGTG 3 cut(s) 25, 148, 670
CfoI GCGC 1 cut(s) 257
Cfr13I GGNCC 1 cut(s) 70
CseI GACGC 1 cut(s) 596
Csp6I GTAC 2 cut(s) 511, 573
CspCI CAANNNNNGTGG 2 cut(s) 505, 540
CviAII CATG 2 cut(s) 307, 360
CviQI GTAC 2 cut(s) 511, 573
DdeI CTNAG 2 cut(s) 299, 626
DpnI GATC 1 cut(s) 25
DpnII GATC 1 cut(s) 23
Eam1104I CTCTTC 1 cut(s) 108
EarI CTCTTC 1 cut(s) 108
EciI GGCGGA 1 cut(s) 170
Eco47I GGWCC 1 cut(s) 70
EcoRI GAATTC 2 cut(s) 481, 542
EcoRII CCWGG 2 cut(s) 229, 487
EcoT22I ATGCAT 1 cut(s) 379
FaeI CATG 2 cut(s) 310, 363
FaqI GGGAC 1 cut(s) 232
FatI CATG 2 cut(s) 306, 359
FblI GTMKAC 1 cut(s) 286
Fnu4HI GCNGC 4 cut(s) 170, 179, 195, 243
FokI GGATG 2 cut(s) 386, 604
Fsp4HI GCNGC 4 cut(s) 170, 179, 195, 243
GlaI GCGC 1 cut(s) 256
GluI GCNGC 4 cut(s) 170, 179, 195, 243
GsaI CCCAGC 1 cut(s) 219
GsuI CTGGAG 2 cut(s) 311, 461
HaeII RGCGCY 1 cut(s) 258
HaeIII GGCC 1 cut(s) 136
HapII CCGG 4 cut(s) 68, 77, 189, 621
HgaI GACGC 1 cut(s) 596
HhaI GCGC 1 cut(s) 257
Hin1I GRCGYC 1 cut(s) 261
Hin1II CATG 2 cut(s) 310, 363
Hin6I GCGC 1 cut(s) 255
HinP1I GCGC 1 cut(s) 255
HinfI GANTC 1 cut(s) 278
HpaII CCGG 4 cut(s) 68, 77, 189, 621
Hpy166II GTNNAC 4 cut(s) 287, 392, 573, 668
Hpy188I TCNGA 3 cut(s) 7, 28, 59
Hpy188III TCNNGA 5 cut(s) 100, 478, 547, 584, 659
Hpy8I GTNNAC 4 cut(s) 287, 392, 573, 668
HpyAV CCTTC 1 cut(s) 8
HpyCH4III ACNGT 2 cut(s) 463, 665
HpyCH4IV ACGT 3 cut(s) 46, 261, 509
HpyCH4V TGCA 5 cut(s) 141, 337, 377, 458, 612
HpyF10VI GCNNNNNNNGC 4 cut(s) 175, 178, 194, 464
HpyF3I CTNAG 2 cut(s) 299, 626
HpySE526I ACGT 3 cut(s) 46, 261, 509
Hsp92I GRCGYC 1 cut(s) 261
Hsp92II CATG 2 cut(s) 310, 363
HspAI GCGC 1 cut(s) 255
Kzo9I GATC 1 cut(s) 23
LmnI GCTCC 3 cut(s) 191, 413, 480
Lsp1109I GCAGC 3 cut(s) 165, 181, 181
LweI GCATC 4 cut(s) 364, 386, 421, 538
MaeII ACGT 3 cut(s) 46, 261, 509
MaeIII GTNAC 1 cut(s) 262
MalI GATC 1 cut(s) 25
MboI GATC 1 cut(s) 23
MboII GAAGA 3 cut(s) 125, 490, 629
MfeI CAATTG 1 cut(s) 641
MluCI AATT 5 cut(s) 401, 481, 542, 641, 651
MlyI GAGTC 1 cut(s) 287
MnlI CCTC 2 cut(s) 286, 461
Mph1103I ATGCAT 1 cut(s) 379
MroXI GAANNNNTTC 1 cut(s) 654
MseI TTAA 1 cut(s) 327
MspI CCGG 4 cut(s) 68, 77, 189, 621
MspR9I CCNGG 4 cut(s) 68, 231, 489, 622
MunI CAATTG 1 cut(s) 641
MvaI CCWGG 2 cut(s) 231, 489
MwoI GCNNNNNNNGC 4 cut(s) 175, 178, 194, 464
NciI CCSGG 2 cut(s) 68, 622
NdeII GATC 1 cut(s) 23
NlaIII CATG 2 cut(s) 310, 363
NmuCI GTSAC 1 cut(s) 262
NsiI ATGCAT 1 cut(s) 379
PcsI WCGNNNNNNNCGW 1 cut(s) 32
PdmI GAANNNNTTC 1 cut(s) 654
PkrI GCNGC 4 cut(s) 171, 180, 196, 244
PleI GAGTC 1 cut(s) 286
PpsI GAGTC 1 cut(s) 286
Psp6I CCWGG 2 cut(s) 229, 487
PspFI CCCAGC 1 cut(s) 215
PspGI CCWGG 2 cut(s) 229, 487
PspPI GGNCC 1 cut(s) 70
PsrI GAACNNNNNNTAC 2 cut(s) 110, 142
RsaI GTAC 2 cut(s) 512, 574
RsaNI GTAC 2 cut(s) 511, 573
SaqAI TTAA 1 cut(s) 327
SatI GCNGC 4 cut(s) 170, 179, 195, 243
Sau3AI GATC 1 cut(s) 23
Sau96I GGNCC 1 cut(s) 70
SchI GAGTC 1 cut(s) 287
ScrFI CCNGG 4 cut(s) 68, 231, 489, 622
SetI ASST 9 cut(s) 49, 196, 210, 264, 297, 418, 453, 512, 677
SfaNI GCATC 4 cut(s) 364, 386, 421, 538
SinI GGWCC 1 cut(s) 70
Sse9I AATT 5 cut(s) 401, 481, 542, 641, 651
SsiI CCGC 2 cut(s) 155, 243
StyD4I CCNGG 4 cut(s) 66, 229, 487, 620
TaaI ACNGT 2 cut(s) 463, 665
TaiI ACGT 3 cut(s) 49, 264, 512
TaqI TCGA 2 cut(s) 99, 520
TaqII GACCGA 1 cut(s) 484
TasI AATT 5 cut(s) 401, 481, 542, 641, 651
TatI WGTACW 1 cut(s) 572
TauI GCSGC 1 cut(s) 245
Tru1I TTAA 1 cut(s) 327
Tru9I TTAA 1 cut(s) 327
TscAI CASTG 3 cut(s) 25, 148, 670
TseFI GTSAC 1 cut(s) 262
TseI GCWGC 3 cut(s) 169, 178, 194
Tsp45I GTSAC 1 cut(s) 262
TspDTI ATGAA 3 cut(s) 213, 490, 585
TspGWI ACGGA 1 cut(s) 76
TspRI CASTG 3 cut(s) 25, 148, 670
VpaK11BI GGWCC 1 cut(s) 70
XapI RAATTY 3 cut(s) 401, 481, 542
XcmI CCANNNNNNNNNTGG 2 cut(s) 485, 521
XmiI GTMKAC 1 cut(s) 286
XmnI GAANNNNTTC 1 cut(s) 654
ZraI GACGTC 1 cut(s) 262
Zsp2I ATGCAT 1 cut(s) 379
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.