Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002776.1

Orthogroup ID

OG0007936

Physical Location & Seq

Genomic Coordinates Reverse (-)

82383 .. 83975

Gene Structure 1593 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002776.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

atgtctttggaactttttaccggaattggactctataaacagatttcgaagcggcgggaagaagaagagcgaaggcggtcggatatggaaggcggtgaatcggagatgacgacggtatcacgtcatcatttcggagatgactcggaccgaccggacttgtctatatccataatcgagaatatgaaagaagactatgggctgttcgtgtggccttgcagtatagtcctggcggagtatgtttggcagcaaagactgcgtttcgccggagctagtgtggttgagcttggtgctggaacttctttgcctggtttggttgccgccaaagtgggcgctgacgtcactcttactgatgaatccaataggttggaggtgctgagcaacatgaaaagtgttattgaacttaacaaacttcaatgcaatgtagtaggattgacatggggagtttgggatgcatctatattcagtttacacccgaaaattattcttggggctgatgtattgtatgatgctaaggcctttgatgacctctttgccactgtggcatatctgctccagaattctcctggttcggtcttcataacaacgtaccataatcgaagtgggcatcatcttatcgaattcttgatggtcaaatggggattgaagtgtgtgaagcttctggatgcgttttcatttatgccatccagcaaagcatctgggctaagtggaaaccttcaattggcagagattgttctggacagtgaacatcgctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_16

Protein Analysis

250

Amino Acids

27.83

Weight (kDa)

5.28

Isoelectric Point (pI)

46.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007936)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63855 AT1G63855 AT1G63855 AT1G63855 AT1G63855 AT1G63855
fragaria_vesca	FvH4_1g11230 FvH4_1g11230 FvH4_1g11230 FvH4_1g11230
malus_domestica	MD15G1238900.v1.1
prunus_persica	Prupe.7G173600_v2.0.a1 Prupe.7G173600_v2.0.a1
pyrus_communis	pycom15g21220
rosa_chinensis	RchiOBHm_Chr2g0098641
rosa_laevigata	RLG00000016820
rosa_multiflora	Rmu_sc0002776.1_g000020
rosa_roxburghii	Rroxscaffold_2G00143820
rosa_rugosa	Rorug02G0073900
rosa_samantha	Rh2AG121500 Rh2BG125200 Rh2CG126200 Rh2DG127300
rosa_wichuraiana	Rw0G004150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	339
AciI	CCGC	6 cut(s)	52, 55, 76, 93, 230, 318
AcsI	RAATTY	2 cut(s)	556, 617
AcyI	GRCGYC	1 cut(s)	336
AfaI	GTAC	1 cut(s)	587
AfiI	CCNNNNNNNGG	1 cut(s)	718
AgsI	TTSAA	4 cut(s)	398, 413, 643, 716
AjiI	CACGTC	1 cut(s)	122
AjnI	CCWGG	3 cut(s)	225, 304, 562
AluBI	AGCT	3 cut(s)	269, 283, 655
AluI	AGCT	3 cut(s)	269, 283, 655
AoxI	GGCC	2 cut(s)	209, 513
ApeKI	GCWGC	1 cut(s)	244
ApoI	RAATTY	2 cut(s)	556, 617
AspLEI	GCGC	1 cut(s)	332
AspS9I	GGNCC	1 cut(s)	145
AsuHPI	GGTGA	1 cut(s)	107
AsuII	TTCGAA	1 cut(s)	47
AvaII	GGWCC	1 cut(s)	145
BaeI	ACNNNNGTAYC	2 cut(s)	99, 132
BbsI	GAAGAC	2 cut(s)	195, 565
BbvI	GCAGC	1 cut(s)	256
BccI	CCATC	2 cut(s)	619, 688
BciT130I	CCWGG	3 cut(s)	227, 306, 564
BfaI	CTAG	1 cut(s)	270
BfoI	RGCGCY	1 cut(s)	333
BglI	GCCNNNNNGGC	1 cut(s)	539
BisI	GCNGC	3 cut(s)	53, 245, 318
BlpI	GCTNAGC	1 cut(s)	374
BlsI	GCNGC	3 cut(s)	54, 246, 319
Bme1390I	CCNGG	3 cut(s)	227, 306, 564
Bme18I	GGWCC	1 cut(s)	145
BmgBI	CACGTC	1 cut(s)	122
BmgT120I	GGNCC	1 cut(s)	145
BmrFI	CCNGG	3 cut(s)	227, 306, 564
BmsI	GCATC	6 cut(s)	439, 461, 496, 613, 652, 701
BpiI	GAAGAC	2 cut(s)	195, 565
BpmI	CTGGAG	1 cut(s)	536
Bpu10I	CCTNAGC	1 cut(s)	510
Bpu1102I	GCTNAGC	1 cut(s)	374
Bpu14I	TTCGAA	1 cut(s)	47
BsaHI	GRCGYC	1 cut(s)	336
BsaWI	WCCGGW	2 cut(s)	20, 151
BsaXI	ACNNNNNCTCC	2 cut(s)	258, 288
Bsc4I	CCNNNNNNNGG	1 cut(s)	718
Bse3DI	GCAATG	1 cut(s)	424
BseBI	CCWGG	3 cut(s)	227, 306, 564
BseGI	GGATG	3 cut(s)	454, 667, 680
BseLI	CCNNNNNNNGG	1 cut(s)	718
BseMI	GCAATG	1 cut(s)	424
BseMII	CTCAG	1 cut(s)	365
BseXI	GCAGC	1 cut(s)	256
Bsh1285I	CGRYCG	2 cut(s)	80, 152
BshFI	GGCC	2 cut(s)	211, 515
BsiEI	CGRYCG	2 cut(s)	80, 152
BsiSI	CCGG	3 cut(s)	21, 152, 264
BslI	CCNNNNNNNGG	1 cut(s)	718
BsnI	GGCC	2 cut(s)	211, 515
Bsp119I	TTCGAA	1 cut(s)	47
Bsp1720I	GCTNAGC	1 cut(s)	374
BspACI	CCGC	6 cut(s)	52, 55, 76, 93, 230, 318
BspANI	GGCC	2 cut(s)	211, 515
BspCNI	CTCAG	1 cut(s)	366
BspQI	GCTCTTC	1 cut(s)	60
BspT104I	TTCGAA	1 cut(s)	47
BsrDI	GCAATG	1 cut(s)	424
BssNI	GRCGYC	1 cut(s)	336
Bst2UI	CCWGG	3 cut(s)	227, 306, 564
Bst4CI	ACNGT	3 cut(s)	115, 538, 740
Bst6I	CTCTTC	1 cut(s)	60
BstACI	GRCGYC	1 cut(s)	336
BstAPI	GCANNNNNTGC	1 cut(s)	253
BstBI	TTCGAA	1 cut(s)	47
BstDEI	CTNAG	3 cut(s)	374, 510, 701
BstF5I	GGATG	3 cut(s)	454, 667, 680
BstH2I	RGCGCY	1 cut(s)	333
BstHHI	GCGC	1 cut(s)	332
BstMCI	CGRYCG	2 cut(s)	80, 152
BstMWI	GCNNNNNNNGC	2 cut(s)	253, 539
BstNI	CCWGG	3 cut(s)	227, 306, 564
BstSCI	CCNGG	3 cut(s)	225, 304, 562
BstV1I	GCAGC	1 cut(s)	256
BstV2I	GAAGAC	2 cut(s)	195, 565
BstXI	CCANNNNNNTGG	1 cut(s)	364
BsuRI	GGCC	2 cut(s)	211, 515
BtgZI	GCGATG	1 cut(s)	731
BtrI	CACGTC	1 cut(s)	122
BtsCI	GGATG	3 cut(s)	454, 667, 680
BtsIMutI	CAGTG	2 cut(s)	534, 745
CfoI	GCGC	1 cut(s)	332
Cfr13I	GGNCC	1 cut(s)	145
CpoI	CGGWCCG	1 cut(s)	145
Csp6I	GTAC	1 cut(s)	586
CspI	CGGWCCG	1 cut(s)	145
CviAII	CATG	2 cut(s)	382, 435
CviJI	RGCY	8 cut(s)	199, 211, 269, 283, 491, 515, 655, 700
CviKI_1	RGCY	8 cut(s)	199, 211, 269, 283, 491, 515, 655, 700
CviQI	GTAC	1 cut(s)	586
DdeI	CTNAG	3 cut(s)	374, 510, 701
Eam1104I	CTCTTC	1 cut(s)	60
EarI	CTCTTC	1 cut(s)	60
EciI	GGCGGA	1 cut(s)	245
Eco147I	AGGCCT	1 cut(s)	515
Eco47I	GGWCC	1 cut(s)	145
EcoRI	GAATTC	2 cut(s)	556, 617
EcoRII	CCWGG	3 cut(s)	225, 304, 562
EcoT22I	ATGCAT	1 cut(s)	454
FaeI	CATG	2 cut(s)	385, 438
FatI	CATG	2 cut(s)	381, 434
FauI	CCCGC	1 cut(s)	48
Fnu4HI	GCNGC	3 cut(s)	53, 245, 318
FokI	GGATG	3 cut(s)	461, 667, 674
Fsp4HI	GCNGC	3 cut(s)	53, 245, 318
FspBI	CTAG	1 cut(s)	270
GlaI	GCGC	1 cut(s)	331
GluI	GCNGC	3 cut(s)	53, 245, 318
GsuI	CTGGAG	1 cut(s)	536
HaeII	RGCGCY	1 cut(s)	333
HaeIII	GGCC	2 cut(s)	211, 515
HapII	CCGG	3 cut(s)	21, 152, 264
HhaI	GCGC	1 cut(s)	332
Hin1I	GRCGYC	1 cut(s)	336
Hin1II	CATG	2 cut(s)	385, 438
Hin6I	GCGC	1 cut(s)	330
HinP1I	GCGC	1 cut(s)	330
HindIII	AAGCTT	1 cut(s)	653
HinfI	GANTC	4 cut(s)	30, 98, 140, 353
HpaII	CCGG	3 cut(s)	21, 152, 264
HphI	GGTGA	1 cut(s)	107
Hpy166II	GTNNAC	2 cut(s)	467, 743
Hpy188I	TCNGA	4 cut(s)	82, 103, 134, 145
Hpy188III	TCNNGA	5 cut(s)	175, 553, 622, 659, 734
Hpy8I	GTNNAC	2 cut(s)	467, 743
Hpy99I	CGWCG	1 cut(s)	115
HpyAV	CCTTC	3 cut(s)	66, 83, 722
HpyCH4III	ACNGT	3 cut(s)	115, 538, 740
HpyCH4IV	ACGT	3 cut(s)	121, 336, 584
HpyCH4V	TGCA	3 cut(s)	216, 417, 452
HpyF10VI	GCNNNNNNNGC	2 cut(s)	253, 539
HpyF3I	CTNAG	3 cut(s)	374, 510, 701
HpySE526I	ACGT	3 cut(s)	121, 336, 584
Hsp92I	GRCGYC	1 cut(s)	336
Hsp92II	CATG	2 cut(s)	385, 438
HspAI	GCGC	1 cut(s)	330
LguI	GCTCTTC	1 cut(s)	60
LmnI	GCTCC	2 cut(s)	266, 555
Lsp1109I	GCAGC	1 cut(s)	256
LweI	GCATC	6 cut(s)	439, 461, 496, 613, 652, 701
MaeI	CTAG	1 cut(s)	270
MaeII	ACGT	3 cut(s)	121, 336, 584
MaeIII	GTNAC	1 cut(s)	337
MboII	GAAGA	5 cut(s)	71, 74, 77, 200, 565
MfeI	CAATTG	1 cut(s)	716
MluCI	AATT	5 cut(s)	24, 477, 556, 617, 716
MlyI	GAGTC	2 cut(s)	24, 134
MmeI	TCCRAC	2 cut(s)	60, 345
MnlI	CCTC	2 cut(s)	361, 536
Mph1103I	ATGCAT	1 cut(s)	454
MseI	TTAA	1 cut(s)	402
MspI	CCGG	3 cut(s)	21, 152, 264
MspR9I	CCNGG	3 cut(s)	227, 306, 564
MunI	CAATTG	1 cut(s)	716
MvaI	CCWGG	3 cut(s)	227, 306, 564
MwoI	GCNNNNNNNGC	2 cut(s)	253, 539
NlaIII	CATG	2 cut(s)	385, 438
NmuCI	GTSAC	1 cut(s)	337
NsiI	ATGCAT	1 cut(s)	454
NspV	TTCGAA	1 cut(s)	47
PceI	AGGCCT	1 cut(s)	515
PciSI	GCTCTTC	1 cut(s)	60
PcsI	WCGNNNNNNNCGW	1 cut(s)	107
PfeI	GAWTC	2 cut(s)	98, 353
PkrI	GCNGC	3 cut(s)	54, 246, 319
PleI	GAGTC	2 cut(s)	24, 134
PpsI	GAGTC	2 cut(s)	24, 134
Psp6I	CCWGG	3 cut(s)	225, 304, 562
PspGI	CCWGG	3 cut(s)	225, 304, 562
PspPI	GGNCC	1 cut(s)	145
RsaI	GTAC	1 cut(s)	587
RsaNI	GTAC	1 cut(s)	586
Rsr2I	CGGWCCG	1 cut(s)	145
RsrII	CGGWCCG	1 cut(s)	145
SapI	GCTCTTC	1 cut(s)	60
SaqAI	TTAA	1 cut(s)	402
SatI	GCNGC	3 cut(s)	53, 245, 318
Sau96I	GGNCC	1 cut(s)	145
SchI	GAGTC	2 cut(s)	24, 134
ScrFI	CCNGG	3 cut(s)	227, 306, 564
SfaNI	GCATC	6 cut(s)	439, 461, 496, 613, 652, 701
SfuI	TTCGAA	1 cut(s)	47
SinI	GGWCC	1 cut(s)	145
Sse9I	AATT	5 cut(s)	24, 477, 556, 617, 716
SseBI	AGGCCT	1 cut(s)	515
SsiI	CCGC	6 cut(s)	52, 55, 76, 93, 230, 318
SspMI	CTAG	1 cut(s)	270
StuI	AGGCCT	1 cut(s)	515
StyD4I	CCNGG	3 cut(s)	225, 304, 562
TaaI	ACNGT	3 cut(s)	115, 538, 740
TaiI	ACGT	3 cut(s)	124, 339, 587
TaqI	TCGA	4 cut(s)	47, 174, 595, 615
TaqII	GACCGA	2 cut(s)	162, 559
TasI	AATT	5 cut(s)	24, 477, 556, 617, 716
TauI	GCSGC	2 cut(s)	55, 320
TfiI	GAWTC	2 cut(s)	98, 353
Tru1I	TTAA	1 cut(s)	402
Tru9I	TTAA	1 cut(s)	402
TscAI	CASTG	2 cut(s)	541, 745
TseFI	GTSAC	1 cut(s)	337
TseI	GCWGC	1 cut(s)	244
Tsp45I	GTSAC	1 cut(s)	337
TspDTI	ATGAA	5 cut(s)	197, 366, 398, 565, 660
TspRI	CASTG	2 cut(s)	541, 745
VpaK11BI	GGWCC	1 cut(s)	145
XapI	RAATTY	2 cut(s)	556, 617
XcmI	CCANNNNNNNNNTGG	2 cut(s)	560, 596
XspI	CTAG	1 cut(s)	270
ZraI	GACGTC	1 cut(s)	337
Zsp2I	ATGCAT	1 cut(s)	454

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.