RchiOBHm_Chr2g0098641

Methyltransferase-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0007936
Physical Location & Seq
Reverse (-)
11052735 .. 11054417
1683 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ47343

Sequence Viewer

Length: 753 bp
ATGTCTTTGGAGCTTTTTACCGGAATTGGACTCTATAAACAGATTTCGCAGCGGCGGGAAGAAGAAGAGCAAAGGCGGTCGGATATGGAAGGCGGTGAATCGGAGATGACGACAGTATCGCGTCATCATTTCGGAGATGACTCGGACCGACCGGACTTGTCTATATCCATAATCGAGAATATGAAAGAAGACTATGGGCTGTTCGTGTGGCCTTGCAGTATAGTCCTGGCGGAGTATGTTTGGCAGCAAAGACTGCGTTTCGCCGGAGCTAGTGTGGTTGAGCTTGGTGCTGGAACTTCTTTGCCTGGTTTGGTTGCCGCCAAAGTGGGCGCTGACGTCACTCTTACTGATGAATCCAATAGGTTAGAGGTGCTGAGCAACATGAAAAGTGTTATTGAACTTAACAAACTTCAATGCAATGTACTAGGATTGACATGGGGAGTTTGGGATGCATCTATATTCAGTTTACACCCGAAAATTATTCTTGGGGCTGATGTATTGTATGATGCTAAGGCCTTTGATGACCTCTTTGCCACTGTGGCATATCTGCTCCAGAATTCTCCTGGTTCGGTCTTCATAACAACGTACCATAATCGAAGTGGGCATCATCTTATTGAATTCTTGATGGTCAAATGGGGATTGAAGTGTGTGAAGCTTCTGGATGCGTTTTCATTTATGCCATCCAGCAAAGCATCTGGGCTAAGTGGAAACCTTCAATTGGCAGAGATTGTTCTGGACAGTGAACATCGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_16

Protein Analysis

250

Amino Acids

27.82

Weight (kDa)

5.07

Isoelectric Point (pI)

45.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_16 PF10294 52 - 200 2.2e-22 Lysine methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 339
AccII CGCG 1 cut(s) 121
AciI CCGC 6 cut(s) 52, 55, 76, 93, 230, 318
AcsI RAATTY 2 cut(s) 556, 617
AcyI GRCGYC 1 cut(s) 336
AfaI GTAC 2 cut(s) 423, 587
AfiI CCNNNNNNNGG 1 cut(s) 718
AgsI TTSAA 5 cut(s) 398, 413, 617, 643, 716
AjnI CCWGG 3 cut(s) 225, 304, 562
AluBI AGCT 4 cut(s) 13, 269, 283, 655
AluI AGCT 4 cut(s) 13, 269, 283, 655
AoxI GGCC 2 cut(s) 209, 513
ApeKI GCWGC 2 cut(s) 49, 244
ApoI RAATTY 2 cut(s) 556, 617
AspLEI GCGC 1 cut(s) 332
AspS9I GGNCC 1 cut(s) 145
AsuHPI GGTGA 1 cut(s) 107
AvaII GGWCC 1 cut(s) 145
BaeI ACNNNNGTAYC 2 cut(s) 99, 132
BbsI GAAGAC 2 cut(s) 195, 565
BbvI GCAGC 2 cut(s) 61, 256
BccI CCATC 2 cut(s) 619, 688
BciT130I CCWGG 3 cut(s) 227, 306, 564
BfaI CTAG 2 cut(s) 270, 425
BfoI RGCGCY 1 cut(s) 333
BglI GCCNNNNNGGC 1 cut(s) 539
BisI GCNGC 4 cut(s) 50, 53, 245, 318
BlpI GCTNAGC 1 cut(s) 374
BlsI GCNGC 4 cut(s) 51, 54, 246, 319
Bme1390I CCNGG 3 cut(s) 227, 306, 564
Bme18I GGWCC 1 cut(s) 145
BmgT120I GGNCC 1 cut(s) 145
BmrFI CCNGG 3 cut(s) 227, 306, 564
BmsI GCATC 6 cut(s) 439, 461, 496, 613, 652, 701
BpiI GAAGAC 2 cut(s) 195, 565
BpmI CTGGAG 1 cut(s) 536
Bpu10I CCTNAGC 1 cut(s) 510
Bpu1102I GCTNAGC 1 cut(s) 374
BsaHI GRCGYC 1 cut(s) 336
BsaWI WCCGGW 2 cut(s) 20, 151
BsaXI ACNNNNNCTCC 2 cut(s) 258, 288
Bsc4I CCNNNNNNNGG 1 cut(s) 718
Bse3DI GCAATG 1 cut(s) 424
BseBI CCWGG 3 cut(s) 227, 306, 564
BseGI GGATG 3 cut(s) 454, 667, 680
BseLI CCNNNNNNNGG 1 cut(s) 718
BseMI GCAATG 1 cut(s) 424
BseMII CTCAG 1 cut(s) 365
BseXI GCAGC 2 cut(s) 61, 256
Bsh1236I CGCG 1 cut(s) 121
Bsh1285I CGRYCG 2 cut(s) 80, 152
BshFI GGCC 2 cut(s) 211, 515
BsiEI CGRYCG 2 cut(s) 80, 152
BsiSI CCGG 3 cut(s) 21, 152, 264
BslI CCNNNNNNNGG 1 cut(s) 718
BsnI GGCC 2 cut(s) 211, 515
Bsp1720I GCTNAGC 1 cut(s) 374
BspACI CCGC 6 cut(s) 52, 55, 76, 93, 230, 318
BspANI GGCC 2 cut(s) 211, 515
BspCNI CTCAG 1 cut(s) 366
BspFNI CGCG 1 cut(s) 121
BspQI GCTCTTC 1 cut(s) 60
BsrDI GCAATG 1 cut(s) 424
BssNI GRCGYC 1 cut(s) 336
Bst2UI CCWGG 3 cut(s) 227, 306, 564
Bst4CI ACNGT 3 cut(s) 115, 538, 740
Bst6I CTCTTC 1 cut(s) 60
BstACI GRCGYC 1 cut(s) 336
BstAPI GCANNNNNTGC 1 cut(s) 253
BstDEI CTNAG 3 cut(s) 374, 510, 701
BstF5I GGATG 3 cut(s) 454, 667, 680
BstFNI CGCG 1 cut(s) 121
BstH2I RGCGCY 1 cut(s) 333
BstHHI GCGC 1 cut(s) 332
BstMCI CGRYCG 2 cut(s) 80, 152
BstMWI GCNNNNNNNGC 2 cut(s) 253, 539
BstNI CCWGG 3 cut(s) 227, 306, 564
BstSCI CCNGG 3 cut(s) 225, 304, 562
BstUI CGCG 1 cut(s) 121
BstV1I GCAGC 2 cut(s) 61, 256
BstV2I GAAGAC 2 cut(s) 195, 565
BsuRI GGCC 2 cut(s) 211, 515
BtgZI GCGATG 1 cut(s) 731
BtsCI GGATG 3 cut(s) 454, 667, 680
BtsIMutI CAGTG 2 cut(s) 534, 745
CfoI GCGC 1 cut(s) 332
Cfr13I GGNCC 1 cut(s) 145
CpoI CGGWCCG 1 cut(s) 145
CseI GACGC 1 cut(s) 110
Csp6I GTAC 2 cut(s) 422, 586
CspI CGGWCCG 1 cut(s) 145
CviAII CATG 2 cut(s) 382, 435
CviJI RGCY 9 cut(s) 13, 199, 211, 269, 283, 491, 515, 655, 700
CviKI_1 RGCY 9 cut(s) 13, 199, 211, 269, 283, 491, 515, 655, 700
CviQI GTAC 2 cut(s) 422, 586
DdeI CTNAG 3 cut(s) 374, 510, 701
Eam1104I CTCTTC 1 cut(s) 60
EarI CTCTTC 1 cut(s) 60
EciI GGCGGA 1 cut(s) 245
Eco147I AGGCCT 1 cut(s) 515
Eco47I GGWCC 1 cut(s) 145
EcoRI GAATTC 2 cut(s) 556, 617
EcoRII CCWGG 3 cut(s) 225, 304, 562
EcoT22I ATGCAT 1 cut(s) 454
FaeI CATG 2 cut(s) 385, 438
FatI CATG 2 cut(s) 381, 434
FauI CCCGC 1 cut(s) 48
Fnu4HI GCNGC 4 cut(s) 50, 53, 245, 318
FokI GGATG 3 cut(s) 461, 667, 674
Fsp4HI GCNGC 4 cut(s) 50, 53, 245, 318
FspBI CTAG 2 cut(s) 270, 425
GlaI GCGC 1 cut(s) 331
GluI GCNGC 4 cut(s) 50, 53, 245, 318
GsuI CTGGAG 1 cut(s) 536
HaeII RGCGCY 1 cut(s) 333
HaeIII GGCC 2 cut(s) 211, 515
HapII CCGG 3 cut(s) 21, 152, 264
HgaI GACGC 1 cut(s) 110
HhaI GCGC 1 cut(s) 332
Hin1I GRCGYC 1 cut(s) 336
Hin1II CATG 2 cut(s) 385, 438
Hin6I GCGC 1 cut(s) 330
HinP1I GCGC 1 cut(s) 330
HindIII AAGCTT 1 cut(s) 653
HinfI GANTC 4 cut(s) 30, 98, 140, 353
HpaII CCGG 3 cut(s) 21, 152, 264
HphI GGTGA 1 cut(s) 107
Hpy166II GTNNAC 2 cut(s) 467, 743
Hpy188I TCNGA 4 cut(s) 82, 103, 134, 145
Hpy188III TCNNGA 5 cut(s) 175, 553, 622, 659, 734
Hpy8I GTNNAC 2 cut(s) 467, 743
HpyAV CCTTC 2 cut(s) 83, 722
HpyCH4III ACNGT 3 cut(s) 115, 538, 740
HpyCH4IV ACGT 2 cut(s) 336, 584
HpyCH4V TGCA 3 cut(s) 216, 417, 452
HpyF10VI GCNNNNNNNGC 2 cut(s) 253, 539
HpyF3I CTNAG 3 cut(s) 374, 510, 701
HpySE526I ACGT 2 cut(s) 336, 584
Hsp92I GRCGYC 1 cut(s) 336
Hsp92II CATG 2 cut(s) 385, 438
HspAI GCGC 1 cut(s) 330
LguI GCTCTTC 1 cut(s) 60
LmnI GCTCC 3 cut(s) 10, 266, 555
Lsp1109I GCAGC 2 cut(s) 61, 256
LweI GCATC 6 cut(s) 439, 461, 496, 613, 652, 701
MaeI CTAG 2 cut(s) 270, 425
MaeII ACGT 2 cut(s) 336, 584
MaeIII GTNAC 1 cut(s) 337
MboII GAAGA 5 cut(s) 71, 74, 77, 200, 565
MfeI CAATTG 1 cut(s) 716
MluCI AATT 5 cut(s) 24, 477, 556, 617, 716
MlyI GAGTC 2 cut(s) 24, 134
MmeI TCCRAC 1 cut(s) 60
MnlI CCTC 2 cut(s) 361, 536
Mph1103I ATGCAT 1 cut(s) 454
MseI TTAA 1 cut(s) 402
MspA1I CMGCKG 1 cut(s) 52
MspI CCGG 3 cut(s) 21, 152, 264
MspR9I CCNGG 3 cut(s) 227, 306, 564
MunI CAATTG 1 cut(s) 716
MvaI CCWGG 3 cut(s) 227, 306, 564
MvnI CGCG 1 cut(s) 121
MwoI GCNNNNNNNGC 2 cut(s) 253, 539
NlaIII CATG 2 cut(s) 385, 438
NmuCI GTSAC 1 cut(s) 337
NsiI ATGCAT 1 cut(s) 454
PceI AGGCCT 1 cut(s) 515
PciSI GCTCTTC 1 cut(s) 60
PcsI WCGNNNNNNNCGW 1 cut(s) 107
PfeI GAWTC 2 cut(s) 98, 353
PkrI GCNGC 4 cut(s) 51, 54, 246, 319
PleI GAGTC 2 cut(s) 24, 134
PpsI GAGTC 2 cut(s) 24, 134
Psp6I CCWGG 3 cut(s) 225, 304, 562
PspGI CCWGG 3 cut(s) 225, 304, 562
PspPI GGNCC 1 cut(s) 145
RsaI GTAC 2 cut(s) 423, 587
RsaNI GTAC 2 cut(s) 422, 586
Rsr2I CGGWCCG 1 cut(s) 145
RsrII CGGWCCG 1 cut(s) 145
SapI GCTCTTC 1 cut(s) 60
SaqAI TTAA 1 cut(s) 402
SatI GCNGC 4 cut(s) 50, 53, 245, 318
Sau96I GGNCC 1 cut(s) 145
SchI GAGTC 2 cut(s) 24, 134
ScrFI CCNGG 3 cut(s) 227, 306, 564
SfaNI GCATC 6 cut(s) 439, 461, 496, 613, 652, 701
SinI GGWCC 1 cut(s) 145
Sse9I AATT 5 cut(s) 24, 477, 556, 617, 716
SseBI AGGCCT 1 cut(s) 515
SsiI CCGC 6 cut(s) 52, 55, 76, 93, 230, 318
SspMI CTAG 2 cut(s) 270, 425
StuI AGGCCT 1 cut(s) 515
StyD4I CCNGG 3 cut(s) 225, 304, 562
TaaI ACNGT 3 cut(s) 115, 538, 740
TaiI ACGT 2 cut(s) 339, 587
TaqI TCGA 2 cut(s) 174, 595
TaqII GACCGA 2 cut(s) 162, 559
TasI AATT 5 cut(s) 24, 477, 556, 617, 716
TatI WGTACW 1 cut(s) 421
TauI GCSGC 2 cut(s) 55, 320
TfiI GAWTC 2 cut(s) 98, 353
Tru1I TTAA 1 cut(s) 402
Tru9I TTAA 1 cut(s) 402
TscAI CASTG 2 cut(s) 541, 745
TseFI GTSAC 1 cut(s) 337
TseI GCWGC 2 cut(s) 49, 244
Tsp45I GTSAC 1 cut(s) 337
TspDTI ATGAA 5 cut(s) 197, 366, 398, 565, 660
TspRI CASTG 2 cut(s) 541, 745
VpaK11BI GGWCC 1 cut(s) 145
XapI RAATTY 2 cut(s) 556, 617
XcmI CCANNNNNNNNNTGG 2 cut(s) 560, 596
XspI CTAG 2 cut(s) 270, 425
ZraI GACGTC 1 cut(s) 337
Zsp2I ATGCAT 1 cut(s) 454
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.