RLG00000016820

Methyltransferase-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0007936
Physical Location & Seq
Reverse (-)
10330202 .. 10331541
1340 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000016820

Sequence Viewer

Length: 669 bp
ATGGAAGGCGGTGAATTGGAGATGACGACAGTATCACGTCATCATTTCGGAGATGACTCGGACAGACCGGACTTCTCTATATCCATAATCGAGAATATGAAAGAAGACTATGGGCTGTTCGTGTGGCCTTGCAGTATAGTCCTGGCGGAGTATGTTTGGCAGCAAAGACTGCGTTTTGCCGGAGCTAGTGTGGTTGAGCTTGGTGCTGGGACTTCTTTGCCTGGTTTGGTTGCCGCCAAAGTGGGCGCTGACGTCACTCTTACTGATGAATCCAATAGGTTGGAGGTGCTAAGCAACATGAAAAGTGTTATTGAACTGAACAGACTTCAATGCAATGTGGTAGGATTGACATGGGGAGTTTGGGATGCATCTATATTCAGTTTACACCCGAAAATTATTCTTGGGGCTGATGTATTGTATGATGCTAAAGCCTTTGATGACCTCTTTGCCACTGTGGCATATCTGCTTCAGAATTCTCCTGGTTCGGTCTTCATAACAACGTACCATAATCGAAGTGGGCATCATCTTATCGAATTCTTGATGATCAAATGGGGATTGAAGTGTGTGAAGCTTCTGGATGCGTTTTCATTTATGCCATCCAGCAAGGCATCTGGGCTAAGTGGAAACCTTCAATTGGCAGAGATTGTTCTGGACGGTGAACAGCGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_16

Protein Analysis

223

Amino Acids

24.49

Weight (kDa)

4.97

Isoelectric Point (pI)

29.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_16 PF10294 26 - 173 1.9e-22 Lysine methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 255
AciI CCGC 3 cut(s) 9, 146, 234
AcsI RAATTY 2 cut(s) 472, 533
AcuI CTGAAG 1 cut(s) 452
AcyI GRCGYC 1 cut(s) 252
AfaI GTAC 1 cut(s) 503
AfeI AGCGCT 1 cut(s) 665
AfiI CCNNNNNNNGG 1 cut(s) 634
AgsI TTSAA 4 cut(s) 314, 329, 559, 632
AjiI CACGTC 1 cut(s) 38
AjnI CCWGG 3 cut(s) 141, 220, 478
AluBI AGCT 3 cut(s) 185, 199, 571
AluI AGCT 3 cut(s) 185, 199, 571
Aor51HI AGCGCT 1 cut(s) 665
AoxI GGCC 1 cut(s) 125
ApeKI GCWGC 1 cut(s) 160
ApoI RAATTY 2 cut(s) 472, 533
AspLEI GCGC 2 cut(s) 248, 666
AsuHPI GGTGA 2 cut(s) 23, 668
BaeI ACNNNNGTAYC 2 cut(s) 15, 48
BbsI GAAGAC 2 cut(s) 111, 481
BbvI GCAGC 1 cut(s) 172
BccI CCATC 1 cut(s) 604
BciT130I CCWGG 3 cut(s) 143, 222, 480
BclI TGATCA 1 cut(s) 543
BfaI CTAG 1 cut(s) 186
BfoI RGCGCY 2 cut(s) 249, 667
BglI GCCNNNNNGGC 1 cut(s) 455
BisI GCNGC 2 cut(s) 161, 234
BlpI GCTNAGC 1 cut(s) 290
BlsI GCNGC 2 cut(s) 162, 235
Bme1390I CCNGG 3 cut(s) 143, 222, 480
BmgBI CACGTC 1 cut(s) 38
BmrFI CCNGG 3 cut(s) 143, 222, 480
BmsI GCATC 6 cut(s) 355, 377, 412, 529, 568, 617
BpiI GAAGAC 2 cut(s) 111, 481
Bpu1102I GCTNAGC 1 cut(s) 290
BsaHI GRCGYC 1 cut(s) 252
BsaWI WCCGGW 1 cut(s) 67
BsaXI ACNNNNNCTCC 2 cut(s) 174, 204
Bsc4I CCNNNNNNNGG 1 cut(s) 634
Bse3DI GCAATG 1 cut(s) 340
BseBI CCWGG 3 cut(s) 143, 222, 480
BseGI GGATG 3 cut(s) 370, 583, 596
BseLI CCNNNNNNNGG 1 cut(s) 634
BseMI GCAATG 1 cut(s) 340
BseXI GCAGC 1 cut(s) 172
BseYI CCCAGC 1 cut(s) 206
BshFI GGCC 1 cut(s) 127
BsiSI CCGG 2 cut(s) 68, 180
BslFI GGGAC 1 cut(s) 223
BslI CCNNNNNNNGG 1 cut(s) 634
BsmFI GGGAC 1 cut(s) 223
BsnI GGCC 1 cut(s) 127
Bsp143I GATC 1 cut(s) 543
Bsp1720I GCTNAGC 1 cut(s) 290
BspACI CCGC 3 cut(s) 9, 146, 234
BspANI GGCC 1 cut(s) 127
BsrDI GCAATG 1 cut(s) 340
BssMI GATC 1 cut(s) 543
BssNI GRCGYC 1 cut(s) 252
Bst2UI CCWGG 3 cut(s) 143, 222, 480
Bst4CI ACNGT 3 cut(s) 31, 454, 656
BstACI GRCGYC 1 cut(s) 252
BstAPI GCANNNNNTGC 1 cut(s) 169
BstDEI CTNAG 2 cut(s) 290, 617
BstF5I GGATG 3 cut(s) 370, 583, 596
BstH2I RGCGCY 2 cut(s) 249, 667
BstHHI GCGC 2 cut(s) 248, 666
BstKTI GATC 1 cut(s) 546
BstMBI GATC 1 cut(s) 543
BstMWI GCNNNNNNNGC 2 cut(s) 169, 455
BstNI CCWGG 3 cut(s) 143, 222, 480
BstSCI CCNGG 3 cut(s) 141, 220, 478
BstV1I GCAGC 1 cut(s) 172
BstV2I GAAGAC 2 cut(s) 111, 481
BstXI CCANNNNNNTGG 1 cut(s) 280
BsuRI GGCC 1 cut(s) 127
BtrI CACGTC 1 cut(s) 38
BtsCI GGATG 3 cut(s) 370, 583, 596
BtsIMutI CAGTG 1 cut(s) 450
CfoI GCGC 2 cut(s) 248, 666
Csp6I GTAC 1 cut(s) 502
CviAII CATG 2 cut(s) 298, 351
CviJI RGCY 8 cut(s) 115, 127, 185, 199, 407, 431, 571, 616
CviKI_1 RGCY 8 cut(s) 115, 127, 185, 199, 407, 431, 571, 616
CviQI GTAC 1 cut(s) 502
DdeI CTNAG 2 cut(s) 290, 617
DpnI GATC 1 cut(s) 545
DpnII GATC 1 cut(s) 543
EciI GGCGGA 1 cut(s) 161
Eco47III AGCGCT 1 cut(s) 665
Eco57I CTGAAG 1 cut(s) 452
EcoRI GAATTC 2 cut(s) 472, 533
EcoRII CCWGG 3 cut(s) 141, 220, 478
EcoT22I ATGCAT 1 cut(s) 370
FaeI CATG 2 cut(s) 301, 354
FaqI GGGAC 1 cut(s) 223
FatI CATG 2 cut(s) 297, 350
FbaI TGATCA 1 cut(s) 543
Fnu4HI GCNGC 2 cut(s) 161, 234
FokI GGATG 3 cut(s) 377, 583, 590
Fsp4HI GCNGC 2 cut(s) 161, 234
FspBI CTAG 1 cut(s) 186
GlaI GCGC 2 cut(s) 247, 665
GluI GCNGC 2 cut(s) 161, 234
GsaI CCCAGC 1 cut(s) 210
HaeII RGCGCY 2 cut(s) 249, 667
HaeIII GGCC 1 cut(s) 127
HapII CCGG 2 cut(s) 68, 180
HhaI GCGC 2 cut(s) 248, 666
Hin1I GRCGYC 1 cut(s) 252
Hin1II CATG 2 cut(s) 301, 354
Hin6I GCGC 2 cut(s) 246, 664
HinP1I GCGC 2 cut(s) 246, 664
HindIII AAGCTT 1 cut(s) 569
HinfI GANTC 2 cut(s) 56, 269
HpaII CCGG 2 cut(s) 68, 180
HphI GGTGA 2 cut(s) 23, 668
Hpy166II GTNNAC 2 cut(s) 383, 659
Hpy188I TCNGA 3 cut(s) 50, 61, 471
Hpy188III TCNNGA 4 cut(s) 91, 538, 575, 650
Hpy8I GTNNAC 2 cut(s) 383, 659
HpyAV CCTTC 1 cut(s) 638
HpyCH4III ACNGT 3 cut(s) 31, 454, 656
HpyCH4IV ACGT 3 cut(s) 37, 252, 500
HpyCH4V TGCA 3 cut(s) 132, 333, 368
HpyF10VI GCNNNNNNNGC 2 cut(s) 169, 455
HpyF3I CTNAG 2 cut(s) 290, 617
HpySE526I ACGT 3 cut(s) 37, 252, 500
Hsp92I GRCGYC 1 cut(s) 252
Hsp92II CATG 2 cut(s) 301, 354
HspAI GCGC 2 cut(s) 246, 664
Ksp22I TGATCA 1 cut(s) 543
Kzo9I GATC 1 cut(s) 543
LmnI GCTCC 1 cut(s) 182
Lsp1109I GCAGC 1 cut(s) 172
LweI GCATC 6 cut(s) 355, 377, 412, 529, 568, 617
MaeI CTAG 1 cut(s) 186
MaeII ACGT 3 cut(s) 37, 252, 500
MaeIII GTNAC 1 cut(s) 253
MalI GATC 1 cut(s) 545
MboI GATC 1 cut(s) 543
MboII GAAGA 2 cut(s) 116, 481
MfeI CAATTG 1 cut(s) 632
MluCI AATT 5 cut(s) 14, 393, 472, 533, 632
MlyI GAGTC 1 cut(s) 50
MmeI TCCRAC 1 cut(s) 261
MnlI CCTC 2 cut(s) 277, 452
Mph1103I ATGCAT 1 cut(s) 370
MspI CCGG 2 cut(s) 68, 180
MspR9I CCNGG 3 cut(s) 143, 222, 480
MunI CAATTG 1 cut(s) 632
MvaI CCWGG 3 cut(s) 143, 222, 480
MwoI GCNNNNNNNGC 2 cut(s) 169, 455
NdeII GATC 1 cut(s) 543
NlaIII CATG 2 cut(s) 301, 354
NmuCI GTSAC 1 cut(s) 253
NsiI ATGCAT 1 cut(s) 370
PfeI GAWTC 1 cut(s) 269
PkrI GCNGC 2 cut(s) 162, 235
PleI GAGTC 1 cut(s) 50
PpsI GAGTC 1 cut(s) 50
Psp6I CCWGG 3 cut(s) 141, 220, 478
PspFI CCCAGC 1 cut(s) 206
PspGI CCWGG 3 cut(s) 141, 220, 478
RsaI GTAC 1 cut(s) 503
RsaNI GTAC 1 cut(s) 502
SatI GCNGC 2 cut(s) 161, 234
Sau3AI GATC 1 cut(s) 543
SchI GAGTC 1 cut(s) 50
ScrFI CCNGG 3 cut(s) 143, 222, 480
SfaNI GCATC 6 cut(s) 355, 377, 412, 529, 568, 617
Sse9I AATT 5 cut(s) 14, 393, 472, 533, 632
SsiI CCGC 3 cut(s) 9, 146, 234
SspMI CTAG 1 cut(s) 186
StyD4I CCNGG 3 cut(s) 141, 220, 478
TaaI ACNGT 3 cut(s) 31, 454, 656
TaiI ACGT 3 cut(s) 40, 255, 503
TaqI TCGA 3 cut(s) 90, 511, 531
TaqII GACCGA 1 cut(s) 475
TasI AATT 5 cut(s) 14, 393, 472, 533, 632
TauI GCSGC 1 cut(s) 236
TfiI GAWTC 1 cut(s) 269
TscAI CASTG 1 cut(s) 457
TseFI GTSAC 1 cut(s) 253
TseI GCWGC 1 cut(s) 160
Tsp45I GTSAC 1 cut(s) 253
TspDTI ATGAA 5 cut(s) 113, 282, 314, 481, 576
TspRI CASTG 1 cut(s) 457
XapI RAATTY 2 cut(s) 472, 533
XcmI CCANNNNNNNNNTGG 1 cut(s) 512
XspI CTAG 1 cut(s) 186
ZraI GACGTC 1 cut(s) 253
Zsp2I ATGCAT 1 cut(s) 370
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.