Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0008527

Physical Location & Seq

Genomic Coordinates Reverse (-)

6361688 .. 6365470

Gene Structure 3783 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g11650.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGGAGCTGAGAAAGAGAAAGATGAGGCAAGTTTTACTTGGGTTCTCTGTGCTTGTGTTTGTTGAGCTAAGCTCCGCAACTGTGGTTTACAAACCACTGTCTATGGCCTTCGCTGACCTTCCTGCCAAGTTTGCTGTTCGTGTCAATAGCTCTGGTGCTTGTGGAGCTTTGGCTAATGCTGACCCTTTGAATGCCTGTTCGCCTCTAAGGAATGGGCGCCGATCAAATGAAACTGAGAAAGCAAGGTTTGCTTTGATAGTTAGAGGGGAATGTACTTTCAAGGACAAAATACAGAATGCTCAAAATGCTGGTTTTGCTGCCGCAATTGTTTATGATGATAAAGATGGGTCAGATTTAATTTCCATGATGATAAACGGTGAGAATACTACAATTCATGCCGTGTTTGTTTCAAAGGCAACTGGTGAACTACTGAAAGAGCATGCTCATGATGAAGAAGGGGAATGCTGTATCTTCCCATTTGCAAAAGAGACAGCCTGGACTGTGCTAGCTATATCTTTTCTCTCATTCATAGTCATATTGGGTATATTATTAATAGCCTTATTTGCTCCAAGACACTGGTTGTACTCACAAGGAAGAAACCAACTTCCTAAAAGTGTGGATACCAAGGTGGTGGAAGCTCTACCTTGCTTCACATTTAGTTCCGCTCGGTTGGGTGAATGCCACAGTGAGGAAACTTGTGCCATTTGCCTTGAGAATTACAAAGATGGGGAAATTCTAAAAGTTCTTCCCTGTCAACACGAATTTCATTCAAGCTGTGTGGACTCATGGCTGACAAAATGGGGCTCATGCTGCCCCGTGTGCAAGCATGATATGAGAACAAAATCTGTGAATCCTGAGATCAAGAGAAGGACCTGGTTGGACAATCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000306 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0019898 GO:0031090 GO:0031312 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043621 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PA Rhodanese zf-RING_11 zf-RING_2

Protein Analysis

297

Amino Acids

32.88

Weight (kDa)

7.5

Isoelectric Point (pI)

42.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PA	PF02225	58 - 144	1.9e-15	PA domain
zf-rbx1	PF12678	228 - 275	8e-06	RING-H2 zinc finger domain
zf-RING_2	PF13639	232 - 275	2e-11	Ring finger domain
zf-RING_11	PF17123	233 - 260	1.6e-09	RING-like zinc finger
zf-C3HC4	PF00097	233 - 274	5.1e-09	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_2	PF13923	233 - 274	4.9e-08	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008527)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66160 AT5G66160
fragaria_vesca	FvH4_1g11650 FvH4_1g11650
malus_domestica	MD02G1129600.v1.1 MD15G1243900.v1.1
prunus_persica	Prupe.7G170000_v2.0.a1 Prupe.7G170000_v2.0.a1
pyrus_communis	pycom02g10150 pycom15g21480
rosa_chinensis	RchiOBHm_Chr2g0099241
rosa_laevigata	RLG00000016864
rosa_multiflora	Rmu_sc0002025.1_g000005
rosa_roxburghii	Rroxscaffold_2G00143290
rosa_rugosa	Rorug02G0078100
rosa_samantha	Rh2AG127300 Rh2BG130300 Rh2BG510800 Rh2CG131500 Rh2DG131900 Rh2DG522500 Rh5AG471500
rosa_wichuraiana	Rw2G009820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	216
AccBSI	CCGCTC	1 cut(s)	665
AciI	CCGC	3 cut(s)	75, 321, 663
AcsI	RAATTY	2 cut(s)	732, 761
AcyI	GRCGYC	1 cut(s)	217
AfaI	GTAC	2 cut(s)	274, 584
AfiI	CCNNNNNNNGG	1 cut(s)	688
AgsI	TTSAA	4 cut(s)	190, 280, 411, 771
AjnI	CCWGG	2 cut(s)	494, 872
AluBI	AGCT	8 cut(s)	7, 67, 72, 150, 167, 509, 638, 774
AluI	AGCT	8 cut(s)	7, 67, 72, 150, 167, 509, 638, 774
Alw26I	GTCTC	1 cut(s)	482
AoxI	GGCC	1 cut(s)	105
ApeKI	GCWGC	2 cut(s)	317, 810
ApoI	RAATTY	2 cut(s)	732, 761
AseI	ATTAAT	1 cut(s)	551
AspLEI	GCGC	1 cut(s)	219
AspS9I	GGNCC	1 cut(s)	870
AsuHPI	GGTGA	3 cut(s)	389, 434, 686
AsuNHI	GCTAGC	1 cut(s)	505
AvaII	GGWCC	1 cut(s)	870
BaeI	ACNNNNGTAYC	2 cut(s)	612, 645
BanI	GGYRCC	1 cut(s)	216
BanII	GRGCYC	1 cut(s)	806
BbvI	GCAGC	2 cut(s)	304, 797
BccI	CCATC	2 cut(s)	338, 719
BceAI	ACGGC	1 cut(s)	383
BciT130I	CCWGG	2 cut(s)	496, 874
BciVI	GTATCC	1 cut(s)	613
BcoDI	GTCTC	1 cut(s)	482
BfaI	CTAG	1 cut(s)	506
BfoI	RGCGCY	1 cut(s)	220
BfuI	GTATCC	1 cut(s)	613
BisI	GCNGC	3 cut(s)	318, 321, 811
BlpI	GCTNAGC	1 cut(s)	68
BlsI	GCNGC	3 cut(s)	319, 322, 812
Bme1390I	CCNGG	2 cut(s)	496, 874
Bme18I	GGWCC	1 cut(s)	870
BmgT120I	GGNCC	1 cut(s)	870
BmiI	GGNNCC	1 cut(s)	218
BmrFI	CCNGG	2 cut(s)	496, 874
BmtI	GCTAGC	1 cut(s)	509
BplI	GAGNNNNNCTC	2 cut(s)	56, 88
Bpu1102I	GCTNAGC	1 cut(s)	68
BpuEI	CTTGAG	1 cut(s)	731
BsaHI	GRCGYC	1 cut(s)	217
BsaJI	CCNNGG	1 cut(s)	624
Bsc4I	CCNNNNNNNGG	1 cut(s)	688
Bse1I	ACTGG	2 cut(s)	424, 581
BseBI	CCWGG	2 cut(s)	496, 874
BseDI	CCNNGG	1 cut(s)	624
BseLI	CCNNNNNNNGG	1 cut(s)	688
BseMII	CTCAG	2 cut(s)	225, 846
BseNI	ACTGG	2 cut(s)	424, 581
BseXI	GCAGC	2 cut(s)	304, 797
BshFI	GGCC	1 cut(s)	107
BshNI	GGYRCC	1 cut(s)	216
BslI	CCNNNNNNNGG	1 cut(s)	688
BsmAI	GTCTC	1 cut(s)	482
BsmI	GAATGC	4 cut(s)	196, 301, 467, 683
BsnI	GGCC	1 cut(s)	107
Bsp1286I	GDGCHC	1 cut(s)	806
Bsp143I	GATC	2 cut(s)	221, 858
Bsp1720I	GCTNAGC	1 cut(s)	68
BspACI	CCGC	3 cut(s)	75, 321, 663
BspANI	GGCC	1 cut(s)	107
BspCNI	CTCAG	2 cut(s)	226, 847
BspHI	TCATGA	1 cut(s)	445
BspLI	GGNNCC	1 cut(s)	218
BspOI	GCTAGC	1 cut(s)	509
BspT107I	GGYRCC	1 cut(s)	216
BsrBI	CCGCTC	1 cut(s)	665
BsrI	ACTGG	2 cut(s)	424, 581
BssECI	CCNNGG	1 cut(s)	624
BssMI	GATC	2 cut(s)	221, 858
BssNI	GRCGYC	1 cut(s)	217
BssT1I	CCWWGG	1 cut(s)	624
Bst2UI	CCWGG	2 cut(s)	496, 874
Bst4CI	ACNGT	5 cut(s)	82, 99, 377, 502, 686
BstACI	GRCGYC	1 cut(s)	217
BstAPI	GCANNNNNTGC	1 cut(s)	248
BstC8I	GCNNGC	3 cut(s)	441, 507, 824
BstDEI	CTNAG	5 cut(s)	8, 68, 206, 234, 855
BstH2I	RGCGCY	1 cut(s)	220
BstHHI	GCGC	1 cut(s)	219
BstKTI	GATC	2 cut(s)	224, 861
BstMAI	GTCTC	1 cut(s)	482
BstMBI	GATC	2 cut(s)	221, 858
BstMWI	GCNNNNNNNGC	8 cut(s)	131, 164, 248, 305, 314, 563, 810, 819
BstNI	CCWGG	2 cut(s)	496, 874
BstNSI	RCATGY	1 cut(s)	443
BstSCI	CCNGG	2 cut(s)	494, 872
BstV1I	GCAGC	2 cut(s)	304, 797
BstXI	CCANNNNNNTGG	2 cut(s)	576, 631
BsuI	GTATCC	1 cut(s)	613
BsuRI	GGCC	1 cut(s)	107
BtsIMutI	CAGTG	3 cut(s)	95, 574, 691
Cac8I	GCNNGC	3 cut(s)	441, 507, 824
CciI	TCATGA	1 cut(s)	445
CfoI	GCGC	1 cut(s)	219
Cfr13I	GGNCC	1 cut(s)	870
CsiI	ACCWGGT	1 cut(s)	872
Csp6I	GTAC	2 cut(s)	273, 583
CspCI	CAANNNNNGTGG	2 cut(s)	759, 794
CviAII	CATG	8 cut(s)	364, 395, 440, 446, 786, 807, 827, 888
CviQI	GTAC	2 cut(s)	273, 583
DdeI	CTNAG	5 cut(s)	8, 68, 206, 234, 855
DinI	GGCGCC	1 cut(s)	218
DpnI	GATC	2 cut(s)	223, 860
DpnII	GATC	2 cut(s)	221, 858
Eco130I	CCWWGG	1 cut(s)	624
Eco24I	GRGCYC	1 cut(s)	806
Eco47I	GGWCC	1 cut(s)	870
EcoO109I	RGGNCCY	1 cut(s)	870
EcoRII	CCWGG	2 cut(s)	494, 872
EcoT14I	CCWWGG	1 cut(s)	624
EcoT38I	GRGCYC	1 cut(s)	806
EgeI	GGCGCC	1 cut(s)	218
EheI	GGCGCC	1 cut(s)	218
ErhI	CCWWGG	1 cut(s)	624
FaeI	CATG	8 cut(s)	367, 398, 443, 449, 789, 810, 830, 891
FalI	AAGNNNNNCTT	4 cut(s)	21, 53, 235, 267
FatI	CATG	8 cut(s)	363, 394, 439, 445, 785, 806, 826, 887
Fnu4HI	GCNGC	3 cut(s)	318, 321, 811
FriOI	GRGCYC	1 cut(s)	806
Fsp4HI	GCNGC	3 cut(s)	318, 321, 811
FspBI	CTAG	1 cut(s)	506
GlaI	GCGC	1 cut(s)	218
GluI	GCNGC	3 cut(s)	318, 321, 811
HaeII	RGCGCY	1 cut(s)	220
HaeIII	GGCC	1 cut(s)	107
HhaI	GCGC	1 cut(s)	219
Hin1I	GRCGYC	1 cut(s)	217
Hin1II	CATG	8 cut(s)	367, 398, 443, 449, 789, 810, 830, 891
Hin6I	GCGC	1 cut(s)	217
HinP1I	GCGC	1 cut(s)	217
HincII	GTYRAC	1 cut(s)	755
HindII	GTYRAC	1 cut(s)	755
HinfI	GANTC	2 cut(s)	782, 850
HphI	GGTGA	3 cut(s)	389, 434, 686
Hpy166II	GTNNAC	4 cut(s)	88, 425, 755, 781
Hpy188I	TCNGA	1 cut(s)	352
Hpy188III	TCNNGA	3 cut(s)	446, 854, 862
Hpy8I	GTNNAC	4 cut(s)	88, 425, 755, 781
HpyAV	CCTTC	4 cut(s)	118, 128, 449, 861
HpyCH4III	ACNGT	5 cut(s)	82, 99, 377, 502, 686
HpyCH4V	TGCA	2 cut(s)	482, 822
HpyF10VI	GCNNNNNNNGC	8 cut(s)	131, 164, 248, 305, 314, 563, 810, 819
HpyF3I	CTNAG	5 cut(s)	8, 68, 206, 234, 855
Hsp92I	GRCGYC	1 cut(s)	217
Hsp92II	CATG	8 cut(s)	367, 398, 443, 449, 789, 810, 830, 891
HspAI	GCGC	1 cut(s)	217
KasI	GGCGCC	1 cut(s)	216
Kzo9I	GATC	2 cut(s)	221, 858
LmnI	GCTCC	4 cut(s)	4, 77, 164, 571
Lsp1109I	GCAGC	2 cut(s)	304, 797
MabI	ACCWGGT	1 cut(s)	872
MaeI	CTAG	1 cut(s)	506
MalI	GATC	2 cut(s)	223, 860
MbiI	CCGCTC	1 cut(s)	665
MboI	GATC	2 cut(s)	221, 858
MboII	GAAGA	4 cut(s)	463, 464, 606, 737
MfeI	CAATTG	1 cut(s)	324
MhlI	GDGCHC	1 cut(s)	806
MluCI	AATT	6 cut(s)	324, 357, 390, 715, 732, 761
Mly113I	GGCGCC	1 cut(s)	217
MlyI	GAGTC	1 cut(s)	776
MmeI	TCCRAC	1 cut(s)	858
MnlI	CCTC	4 cut(s)	18, 213, 257, 682
MseI	TTAA	2 cut(s)	356, 551
MslI	CAYNNNNRTG	1 cut(s)	444
MspR9I	CCNGG	2 cut(s)	496, 874
MunI	CAATTG	1 cut(s)	324
Mva1269I	GAATGC	4 cut(s)	196, 301, 467, 683
MvaI	CCWGG	2 cut(s)	496, 874
MwoI	GCNNNNNNNGC	8 cut(s)	131, 164, 248, 305, 314, 563, 810, 819
NarI	GGCGCC	1 cut(s)	217
NdeII	GATC	2 cut(s)	221, 858
NheI	GCTAGC	1 cut(s)	505
NlaIII	CATG	8 cut(s)	367, 398, 443, 449, 789, 810, 830, 891
NlaIV	GGNNCC	1 cut(s)	218
NspI	RCATGY	1 cut(s)	443
PaeI	GCATGC	1 cut(s)	443
PagI	TCATGA	1 cut(s)	445
PctI	GAATGC	4 cut(s)	196, 301, 467, 683
PfeI	GAWTC	1 cut(s)	850
PkrI	GCNGC	3 cut(s)	319, 322, 812
PleI	GAGTC	1 cut(s)	776
PluTI	GGCGCC	1 cut(s)	220
PpsI	GAGTC	1 cut(s)	776
PpuMI	RGGWCCY	1 cut(s)	870
PshBI	ATTAAT	1 cut(s)	551
Psp5II	RGGWCCY	1 cut(s)	870
Psp6I	CCWGG	2 cut(s)	494, 872
PspGI	CCWGG	2 cut(s)	494, 872
PspN4I	GGNNCC	1 cut(s)	218
PspPI	GGNCC	1 cut(s)	870
PspPPI	RGGWCCY	1 cut(s)	870
RsaI	GTAC	2 cut(s)	274, 584
RsaNI	GTAC	2 cut(s)	273, 583
RseI	CAYNNNNRTG	1 cut(s)	444
SaqAI	TTAA	2 cut(s)	356, 551
SatI	GCNGC	3 cut(s)	318, 321, 811
Sau3AI	GATC	2 cut(s)	221, 858
Sau96I	GGNCC	1 cut(s)	870
SchI	GAGTC	1 cut(s)	776
ScrFI	CCNGG	2 cut(s)	496, 874
SduI	GDGCHC	1 cut(s)	806
SexAI	ACCWGGT	1 cut(s)	872
SfoI	GGCGCC	1 cut(s)	218
SinI	GGWCC	1 cut(s)	870
SmiMI	CAYNNNNRTG	1 cut(s)	444
SmlI	CTYRAG	1 cut(s)	710
SmoI	CTYRAG	1 cut(s)	710
SphI	GCATGC	1 cut(s)	443
Sse9I	AATT	6 cut(s)	324, 357, 390, 715, 732, 761
SsiI	CCGC	3 cut(s)	75, 321, 663
SspDI	GGCGCC	1 cut(s)	216
SspMI	CTAG	1 cut(s)	506
StyD4I	CCNGG	2 cut(s)	494, 872
StyI	CCWWGG	1 cut(s)	624
TaaI	ACNGT	5 cut(s)	82, 99, 377, 502, 686
TasI	AATT	6 cut(s)	324, 357, 390, 715, 732, 761
TatI	WGTACW	2 cut(s)	272, 582
TauI	GCSGC	1 cut(s)	323
TfiI	GAWTC	1 cut(s)	850
Tru1I	TTAA	2 cut(s)	356, 551
Tru9I	TTAA	2 cut(s)	356, 551
TscAI	CASTG	3 cut(s)	102, 581, 691
TseI	GCWGC	2 cut(s)	317, 810
TspDTI	ATGAA	5 cut(s)	243, 383, 465, 517, 755
TspRI	CASTG	3 cut(s)	102, 581, 691
VpaK11BI	GGWCC	1 cut(s)	870
VspI	ATTAAT	1 cut(s)	551
XapI	RAATTY	2 cut(s)	732, 761
XceI	RCATGY	1 cut(s)	443
XspI	CTAG	1 cut(s)	506

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.