Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0008527

Physical Location & Seq

Genomic Coordinates Reverse (-)

10770323 .. 10773157

Gene Structure 2835 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000016864

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGAGGCAAGCTTTACTTGGATTCTCTGTGATTGTGTTTGTTGAACTAAGCTCTGCAACTGTGGTTTACAAACCATTGTCTATGGCCTTCGCTGACCTTCCTGCCAAGTTTGCTGTTGGTGTTGATAGAACTGGTGCTTGTGGAGCTTTGGTAAACGCAGACCCTTTGAATGCATGTTCGCCTCTACGGAGTGGGCGCCGATCAAATGAAACTGATAGAGCAAGGTTTGCTTTGATAGTTAGAGGGGAATGTGCTTTCAAGGATAAAGTACAGAATGCTCAAAATGCTGGTTTTGGTGCTGCGATTGTTTATGATGATAGAGATGGAGAAGATTTAGTTTACATGATGATAAACGGTGAGAATACTACAATTCATGCCGTGTTTGTTTCAAAAGCAACAGGTGAACTGCTGAAGGAGCATGCTCATGATGAAGAAGGGGAATGCTGTATCTTTCCATTTCAAACTGAAACAGCCTGGACTGTGCTAGCTATATCTTTTATCTCATTCATTGTCATTTTGGGTATATTATTAATAGCCATATTTGCTCCAAGACACTGGCTGTACTCACAAGGAAGAAACCAACTTCCTAAAAGTGTGGATAGGAAGGTGGTGGAAGCTCTACCGTGCTTCACATTCAGTTCCGCTCGTTTGGGTGAATGCCACAGTGAAGAAACTTGTGCCATCTGCCTTGAGAATTACAAAGATGGGGAAATTCTTAAAGTTCTTCCATGTCAACACGAATTTCATTCAAGCTGTGTGGACTCATGGCTGACAAAATGGGGGACATGCTGCCCCGTGTGCAAGCATGATATGAGAAAAAAATCTGTGAATCCTGAGATCAAGAGAAGGACCTGGTTGGATGATTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000306 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0019898 GO:0031090 GO:0031312 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043621 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PA Rhodanese zf-RING_11 zf-RING_2

Protein Analysis

290

Amino Acids

32.1

Weight (kDa)

6.08

Isoelectric Point (pI)

38.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PA	PF02225	48 - 137	2.8e-14	PA domain
zf-rbx1	PF12678	221 - 268	8.3e-06	RING-H2 zinc finger domain
zf-RING_2	PF13639	225 - 268	1.2e-11	Ring finger domain
zf-RING_11	PF17123	226 - 253	1.5e-09	RING-like zinc finger
zf-C3HC4	PF00097	226 - 267	6.2e-09	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_2	PF13923	226 - 267	6.6e-08	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0008527)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66160 AT5G66160
fragaria_vesca	FvH4_1g11650 FvH4_1g11650
malus_domestica	MD02G1129600.v1.1 MD15G1243900.v1.1
prunus_persica	Prupe.7G170000_v2.0.a1 Prupe.7G170000_v2.0.a1
pyrus_communis	pycom02g10150 pycom15g21480
rosa_chinensis	RchiOBHm_Chr2g0099241
rosa_laevigata	RLG00000016864
rosa_multiflora	Rmu_sc0002025.1_g000005
rosa_roxburghii	Rroxscaffold_2G00143290
rosa_rugosa	Rorug02G0078100
rosa_samantha	Rh2AG127300 Rh2BG130300 Rh2BG510800 Rh2CG131500 Rh2DG131900 Rh2DG522500 Rh5AG471500
rosa_wichuraiana	Rw2G009820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	195
AccBSI	CCGCTC	1 cut(s)	644
AciI	CCGC	1 cut(s)	642
AcsI	RAATTY	2 cut(s)	711, 740
AcuI	CTGAAG	1 cut(s)	431
AcyI	GRCGYC	1 cut(s)	196
AfaI	GTAC	2 cut(s)	270, 563
AgsI	TTSAA	6 cut(s)	44, 169, 259, 390, 461, 750
AjnI	CCWGG	2 cut(s)	473, 851
AluBI	AGCT	6 cut(s)	11, 51, 146, 488, 617, 753
AluI	AGCT	6 cut(s)	11, 51, 146, 488, 617, 753
AoxI	GGCC	1 cut(s)	84
ApeKI	GCWGC	2 cut(s)	299, 789
ApoI	RAATTY	2 cut(s)	711, 740
AseI	ATTAAT	1 cut(s)	530
AspLEI	GCGC	1 cut(s)	198
AspS9I	GGNCC	1 cut(s)	849
AsuHPI	GGTGA	3 cut(s)	368, 413, 665
AsuNHI	GCTAGC	1 cut(s)	484
AvaII	GGWCC	1 cut(s)	849
BanI	GGYRCC	1 cut(s)	195
BbvI	GCAGC	2 cut(s)	286, 776
BccI	CCATC	3 cut(s)	317, 689, 698
BceAI	ACGGC	1 cut(s)	362
BciT130I	CCWGG	2 cut(s)	475, 853
BfaI	CTAG	1 cut(s)	485
BfoI	RGCGCY	1 cut(s)	199
BisI	GCNGC	2 cut(s)	300, 790
BlsI	GCNGC	2 cut(s)	301, 791
Bme1390I	CCNGG	2 cut(s)	475, 853
Bme18I	GGWCC	1 cut(s)	849
BmgT120I	GGNCC	1 cut(s)	849
BmiI	GGNNCC	1 cut(s)	197
BmrFI	CCNGG	2 cut(s)	475, 853
BmtI	GCTAGC	1 cut(s)	488
BpuEI	CTTGAG	1 cut(s)	710
BsaHI	GRCGYC	1 cut(s)	196
BsaXI	ACNNNNNCTCC	2 cut(s)	135, 165
Bse1I	ACTGG	2 cut(s)	136, 560
BseBI	CCWGG	2 cut(s)	475, 853
BseGI	GGATG	1 cut(s)	865
BseMII	CTCAG	1 cut(s)	825
BseNI	ACTGG	2 cut(s)	136, 560
BseXI	GCAGC	2 cut(s)	286, 776
BshFI	GGCC	1 cut(s)	86
BshNI	GGYRCC	1 cut(s)	195
BslFI	GGGAC	1 cut(s)	796
BsmFI	GGGAC	1 cut(s)	796
BsmI	GAATGC	4 cut(s)	175, 280, 446, 662
BsnI	GGCC	1 cut(s)	86
Bsp143I	GATC	2 cut(s)	200, 837
BspACI	CCGC	1 cut(s)	642
BspANI	GGCC	1 cut(s)	86
BspCNI	CTCAG	1 cut(s)	826
BspHI	TCATGA	2 cut(s)	424, 866
BspLI	GGNNCC	1 cut(s)	197
BspOI	GCTAGC	1 cut(s)	488
BspT107I	GGYRCC	1 cut(s)	195
BsrBI	CCGCTC	1 cut(s)	644
BsrI	ACTGG	2 cut(s)	136, 560
BssMI	GATC	2 cut(s)	200, 837
BssNI	GRCGYC	1 cut(s)	196
Bst2UI	CCWGG	2 cut(s)	475, 853
Bst4CI	ACNGT	5 cut(s)	61, 356, 481, 624, 665
BstACI	GRCGYC	1 cut(s)	196
BstAPI	GCANNNNNTGC	1 cut(s)	227
BstC8I	GCNNGC	4 cut(s)	9, 420, 486, 803
BstDEI	CTNAG	2 cut(s)	47, 834
BstF5I	GGATG	1 cut(s)	865
BstH2I	RGCGCY	1 cut(s)	199
BstHHI	GCGC	1 cut(s)	198
BstKTI	GATC	2 cut(s)	203, 840
BstMBI	GATC	2 cut(s)	200, 837
BstMWI	GCNNNNNNNGC	7 cut(s)	110, 143, 227, 284, 415, 542, 798
BstNI	CCWGG	2 cut(s)	475, 853
BstNSI	RCATGY	3 cut(s)	177, 422, 789
BstSCI	CCNGG	2 cut(s)	473, 851
BstV1I	GCAGC	2 cut(s)	286, 776
BstXI	CCANNNNNNTGG	1 cut(s)	555
BsuRI	GGCC	1 cut(s)	86
BtsCI	GGATG	1 cut(s)	865
BtsIMutI	CAGTG	2 cut(s)	553, 670
Cac8I	GCNNGC	4 cut(s)	9, 420, 486, 803
CciI	TCATGA	2 cut(s)	424, 866
CfoI	GCGC	1 cut(s)	198
Cfr13I	GGNCC	1 cut(s)	849
CsiI	ACCWGGT	1 cut(s)	851
Csp6I	GTAC	2 cut(s)	269, 562
CspCI	CAANNNNNGTGG	2 cut(s)	738, 773
CviQI	GTAC	2 cut(s)	269, 562
DdeI	CTNAG	2 cut(s)	47, 834
DinI	GGCGCC	1 cut(s)	197
DpnI	GATC	2 cut(s)	202, 839
DpnII	GATC	2 cut(s)	200, 837
Eco47I	GGWCC	1 cut(s)	849
Eco57I	CTGAAG	1 cut(s)	431
EcoO109I	RGGNCCY	1 cut(s)	849
EcoRII	CCWGG	2 cut(s)	473, 851
EcoT22I	ATGCAT	1 cut(s)	175
EgeI	GGCGCC	1 cut(s)	197
EheI	GGCGCC	1 cut(s)	197
FalI	AAGNNNNNCTT	3 cut(s)	32, 214, 246
FaqI	GGGAC	1 cut(s)	796
Fnu4HI	GCNGC	2 cut(s)	300, 790
Fsp4HI	GCNGC	2 cut(s)	300, 790
FspBI	CTAG	1 cut(s)	485
GlaI	GCGC	1 cut(s)	197
GluI	GCNGC	2 cut(s)	300, 790
HaeII	RGCGCY	1 cut(s)	199
HaeIII	GGCC	1 cut(s)	86
HhaI	GCGC	1 cut(s)	198
Hin1I	GRCGYC	1 cut(s)	196
Hin6I	GCGC	1 cut(s)	196
HinP1I	GCGC	1 cut(s)	196
HincII	GTYRAC	1 cut(s)	734
HindII	GTYRAC	1 cut(s)	734
HindIII	AAGCTT	1 cut(s)	9
HinfI	GANTC	4 cut(s)	21, 761, 829, 863
HphI	GGTGA	3 cut(s)	368, 413, 665
Hpy166II	GTNNAC	6 cut(s)	67, 154, 340, 404, 734, 760
Hpy188III	TCNNGA	4 cut(s)	425, 833, 841, 867
Hpy8I	GTNNAC	6 cut(s)	67, 154, 340, 404, 734, 760
HpyAV	CCTTC	6 cut(s)	97, 107, 406, 428, 598, 840
HpyCH4III	ACNGT	5 cut(s)	61, 356, 481, 624, 665
HpyCH4V	TGCA	3 cut(s)	56, 173, 801
HpyF10VI	GCNNNNNNNGC	7 cut(s)	110, 143, 227, 284, 415, 542, 798
HpyF3I	CTNAG	2 cut(s)	47, 834
Hsp92I	GRCGYC	1 cut(s)	196
HspAI	GCGC	1 cut(s)	196
KasI	GGCGCC	1 cut(s)	195
Kzo9I	GATC	2 cut(s)	200, 837
LmnI	GCTCC	3 cut(s)	143, 415, 550
Lsp1109I	GCAGC	2 cut(s)	286, 776
MabI	ACCWGGT	1 cut(s)	851
MaeI	CTAG	1 cut(s)	485
MalI	GATC	2 cut(s)	202, 839
MbiI	CCGCTC	1 cut(s)	644
MboI	GATC	2 cut(s)	200, 837
MboII	GAAGA	5 cut(s)	341, 443, 585, 680, 716
MluCI	AATT	4 cut(s)	369, 694, 711, 740
Mly113I	GGCGCC	1 cut(s)	196
MlyI	GAGTC	1 cut(s)	755
MmeI	TCCRAC	1 cut(s)	837
MnlI	CCTC	2 cut(s)	192, 236
Mph1103I	ATGCAT	1 cut(s)	175
MseI	TTAA	2 cut(s)	530, 717
MslI	CAYNNNNRTG	1 cut(s)	423
MspR9I	CCNGG	2 cut(s)	475, 853
Mva1269I	GAATGC	4 cut(s)	175, 280, 446, 662
MvaI	CCWGG	2 cut(s)	475, 853
MwoI	GCNNNNNNNGC	7 cut(s)	110, 143, 227, 284, 415, 542, 798
NarI	GGCGCC	1 cut(s)	196
NdeII	GATC	2 cut(s)	200, 837
NheI	GCTAGC	1 cut(s)	484
NlaIV	GGNNCC	1 cut(s)	197
NsiI	ATGCAT	1 cut(s)	175
NspI	RCATGY	3 cut(s)	177, 422, 789
PaeI	GCATGC	1 cut(s)	422
PagI	TCATGA	2 cut(s)	424, 866
PctI	GAATGC	4 cut(s)	175, 280, 446, 662
PfeI	GAWTC	3 cut(s)	21, 829, 863
PkrI	GCNGC	2 cut(s)	301, 791
PleI	GAGTC	1 cut(s)	755
PluTI	GGCGCC	1 cut(s)	199
PpsI	GAGTC	1 cut(s)	755
PpuMI	RGGWCCY	1 cut(s)	849
PshBI	ATTAAT	1 cut(s)	530
Psp5II	RGGWCCY	1 cut(s)	849
Psp6I	CCWGG	2 cut(s)	473, 851
PspGI	CCWGG	2 cut(s)	473, 851
PspN4I	GGNNCC	1 cut(s)	197
PspPI	GGNCC	1 cut(s)	849
PspPPI	RGGWCCY	1 cut(s)	849
RsaI	GTAC	2 cut(s)	270, 563
RsaNI	GTAC	2 cut(s)	269, 562
RseI	CAYNNNNRTG	1 cut(s)	423
SaqAI	TTAA	2 cut(s)	530, 717
SatI	GCNGC	2 cut(s)	300, 790
Sau3AI	GATC	2 cut(s)	200, 837
Sau96I	GGNCC	1 cut(s)	849
SchI	GAGTC	1 cut(s)	755
ScrFI	CCNGG	2 cut(s)	475, 853
SexAI	ACCWGGT	1 cut(s)	851
SfoI	GGCGCC	1 cut(s)	197
SinI	GGWCC	1 cut(s)	849
SmiMI	CAYNNNNRTG	1 cut(s)	423
SmlI	CTYRAG	1 cut(s)	689
SmoI	CTYRAG	1 cut(s)	689
SphI	GCATGC	1 cut(s)	422
Sse9I	AATT	4 cut(s)	369, 694, 711, 740
SsiI	CCGC	1 cut(s)	642
SspDI	GGCGCC	1 cut(s)	195
SspMI	CTAG	1 cut(s)	485
StyD4I	CCNGG	2 cut(s)	473, 851
TaaI	ACNGT	5 cut(s)	61, 356, 481, 624, 665
TasI	AATT	4 cut(s)	369, 694, 711, 740
TatI	WGTACW	2 cut(s)	268, 561
TfiI	GAWTC	3 cut(s)	21, 829, 863
Tru1I	TTAA	2 cut(s)	530, 717
Tru9I	TTAA	2 cut(s)	530, 717
TscAI	CASTG	2 cut(s)	560, 670
TseI	GCWGC	2 cut(s)	299, 789
TspDTI	ATGAA	6 cut(s)	222, 362, 444, 496, 734, 855
TspGWI	ACGGA	1 cut(s)	202
TspRI	CASTG	2 cut(s)	560, 670
VpaK11BI	GGWCC	1 cut(s)	849
VspI	ATTAAT	1 cut(s)	530
XapI	RAATTY	2 cut(s)	711, 740
XceI	RCATGY	3 cut(s)	177, 422, 789
XspI	CTAG	1 cut(s)	485
Zsp2I	ATGCAT	1 cut(s)	175

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.