Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0008527

Physical Location & Seq

Genomic Coordinates Reverse (-)

9947347 .. 9951146

Gene Structure 3800 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G009820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGTGCTTCAAGGATAAAGTACGGAATGCTCAAAATGCTGGTTTTGGTGCCGCAATTGTTTATGATGATAGAGATGGAGAAGATTTAGTTTACATGATGATAAACGGTGAGAATACTACAATTCATGCCGTGTTTGTTTCAAAAGCAACAGGTGAACTATTGAAGGATCATGCTTATGATGAGGAAGGGGAATGCTGTATCTTTCCATTTCAAACTGAAACAGCCTGGACTGTGCTAGCTATATCTTTTATCTCATTCATTGTCATATTGGGTATATTATTAATAGCCATATTTGCTCCAAGACACTGGCTGTACTCACAAGGAAGAAACCAACTTCCTAAAAGTGTGGATAGGAAGGTGGTGGAAGCTCTGCCTTGCTTCACATTCAGTTCTGCTCGTTTGGGTGAATGCCACAGTGAAGAAACTTGCGCCATCTGCCTTGAGAATTACAAAGATGGGGAAATTCTTAAAGTTCTTCCCTGTCAACACGAATTTCATTCAAGCTGTGTGGACTCATGGCTGACAAAATGGGGGACATGCTGCCCCGTGTGCAAGCATGATATGAGAACAAAATCTGTGAATCCTGAGGTAAGAGAGTGGGGTGCATCCTCATTATTTAGTGTTCCACCGTTGAGTCTTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000306 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0019898 GO:0031090 GO:0031312 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043621 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PA Rhodanese zf-RING_11 zf-RING_2

Protein Analysis

214

Amino Acids

24.01

Weight (kDa)

5.35

Isoelectric Point (pI)

33.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PA	PF02225	3 - 54	4.2e-08	PA domain
zf-rbx1	PF12678	138 - 185	5.1e-06	RING-H2 zinc finger domain
zf-RING_2	PF13639	142 - 185	7.4e-12	Ring finger domain
zf-RING_11	PF17123	143 - 170	1e-09	RING-like zinc finger
zf-C3HC4	PF00097	143 - 184	3.9e-09	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_2	PF13923	143 - 184	4.1e-08	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0008527)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66160 AT5G66160
fragaria_vesca	FvH4_1g11650 FvH4_1g11650
malus_domestica	MD02G1129600.v1.1 MD15G1243900.v1.1
prunus_persica	Prupe.7G170000_v2.0.a1 Prupe.7G170000_v2.0.a1
pyrus_communis	pycom02g10150 pycom15g21480
rosa_chinensis	RchiOBHm_Chr2g0099241
rosa_laevigata	RLG00000016864
rosa_multiflora	Rmu_sc0002025.1_g000005
rosa_roxburghii	Rroxscaffold_2G00143290
rosa_rugosa	Rorug02G0078100
rosa_samantha	Rh2AG127300 Rh2BG130300 Rh2BG510800 Rh2CG131500 Rh2DG131900 Rh2DG522500 Rh5AG471500
rosa_wichuraiana	Rw2G009820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	47
AciI	CCGC	1 cut(s)	51
AclWI	GGATC	1 cut(s)	174
AcsI	RAATTY	2 cut(s)	462, 491
AfaI	GTAC	2 cut(s)	21, 314
AgsI	TTSAA	5 cut(s)	10, 141, 163, 212, 501
AjnI	CCWGG	1 cut(s)	224
AluBI	AGCT	3 cut(s)	239, 368, 504
AluI	AGCT	3 cut(s)	239, 368, 504
AlwI	GGATC	1 cut(s)	174
ApeKI	GCWGC	1 cut(s)	540
ApoI	RAATTY	2 cut(s)	462, 491
AseI	ATTAAT	1 cut(s)	281
AspLEI	GCGC	1 cut(s)	431
AsuHPI	GGTGA	3 cut(s)	119, 164, 416
AsuNHI	GCTAGC	1 cut(s)	235
AxyI	CCTNAGG	1 cut(s)	585
BanI	GGYRCC	1 cut(s)	47
BbvI	GCAGC	1 cut(s)	527
BccI	CCATC	3 cut(s)	68, 440, 449
BceAI	ACGGC	1 cut(s)	113
BciT130I	CCWGG	1 cut(s)	226
BfaI	CTAG	1 cut(s)	236
BisI	GCNGC	2 cut(s)	51, 541
BlsI	GCNGC	2 cut(s)	52, 542
Bme1390I	CCNGG	1 cut(s)	226
BmiI	GGNNCC	1 cut(s)	49
BmrFI	CCNGG	1 cut(s)	226
BmsI	GCATC	1 cut(s)	614
BmtI	GCTAGC	1 cut(s)	239
BpuEI	CTTGAG	1 cut(s)	461
Bse1I	ACTGG	1 cut(s)	311
Bse21I	CCTNAGG	1 cut(s)	585
BseBI	CCWGG	1 cut(s)	226
BseGI	GGATG	1 cut(s)	605
BseMII	CTCAG	1 cut(s)	576
BseNI	ACTGG	1 cut(s)	311
BseXI	GCAGC	1 cut(s)	527
BshNI	GGYRCC	1 cut(s)	47
BslFI	GGGAC	1 cut(s)	547
BsmFI	GGGAC	1 cut(s)	547
BsmI	GAATGC	3 cut(s)	31, 197, 413
Bsp143I	GATC	1 cut(s)	166
BspACI	CCGC	1 cut(s)	51
BspCNI	CTCAG	1 cut(s)	577
BspLI	GGNNCC	1 cut(s)	49
BspOI	GCTAGC	1 cut(s)	239
BspPI	GGATC	1 cut(s)	174
BspT107I	GGYRCC	1 cut(s)	47
BsrI	ACTGG	1 cut(s)	311
BssMI	GATC	1 cut(s)	166
Bst2UI	CCWGG	1 cut(s)	226
Bst4CI	ACNGT	4 cut(s)	107, 232, 416, 630
BstC8I	GCNNGC	2 cut(s)	237, 554
BstDEI	CTNAG	1 cut(s)	585
BstF5I	GGATG	1 cut(s)	605
BstHHI	GCGC	1 cut(s)	431
BstKTI	GATC	1 cut(s)	169
BstMBI	GATC	1 cut(s)	166
BstMWI	GCNNNNNNNGC	4 cut(s)	35, 293, 435, 549
BstNI	CCWGG	1 cut(s)	226
BstNSI	RCATGY	1 cut(s)	540
BstSCI	CCNGG	1 cut(s)	224
BstV1I	GCAGC	1 cut(s)	527
BstXI	CCANNNNNNTGG	1 cut(s)	306
Bsu36I	CCTNAGG	1 cut(s)	585
BtsCI	GGATG	1 cut(s)	605
BtsIMutI	CAGTG	2 cut(s)	304, 421
Cac8I	GCNNGC	2 cut(s)	237, 554
CfoI	GCGC	1 cut(s)	431
Csp6I	GTAC	2 cut(s)	20, 313
CspCI	CAANNNNNGTGG	2 cut(s)	489, 524
CviAII	CATG	6 cut(s)	94, 125, 170, 516, 537, 557
CviJI	RGCY	7 cut(s)	224, 239, 287, 310, 368, 504, 520
CviKI_1	RGCY	7 cut(s)	224, 239, 287, 310, 368, 504, 520
CviQI	GTAC	2 cut(s)	20, 313
DdeI	CTNAG	1 cut(s)	585
DpnI	GATC	1 cut(s)	168
DpnII	GATC	1 cut(s)	166
Eco81I	CCTNAGG	1 cut(s)	585
EcoRII	CCWGG	1 cut(s)	224
FaeI	CATG	6 cut(s)	97, 128, 173, 519, 540, 560
FaqI	GGGAC	1 cut(s)	547
FatI	CATG	6 cut(s)	93, 124, 169, 515, 536, 556
Fnu4HI	GCNGC	2 cut(s)	51, 541
FokI	GGATG	1 cut(s)	592
Fsp4HI	GCNGC	2 cut(s)	51, 541
FspBI	CTAG	1 cut(s)	236
GlaI	GCGC	1 cut(s)	430
GluI	GCNGC	2 cut(s)	51, 541
HhaI	GCGC	1 cut(s)	431
Hin1II	CATG	6 cut(s)	97, 128, 173, 519, 540, 560
Hin6I	GCGC	1 cut(s)	429
HinP1I	GCGC	1 cut(s)	429
HincII	GTYRAC	1 cut(s)	485
HindII	GTYRAC	1 cut(s)	485
HinfI	GANTC	3 cut(s)	512, 580, 634
HphI	GGTGA	3 cut(s)	119, 164, 416
Hpy166II	GTNNAC	4 cut(s)	91, 155, 485, 511
Hpy188III	TCNNGA	1 cut(s)	584
Hpy8I	GTNNAC	4 cut(s)	91, 155, 485, 511
HpyAV	CCTTC	3 cut(s)	157, 179, 349
HpyCH4III	ACNGT	4 cut(s)	107, 232, 416, 630
HpyCH4V	TGCA	2 cut(s)	552, 605
HpyF10VI	GCNNNNNNNGC	4 cut(s)	35, 293, 435, 549
HpyF3I	CTNAG	1 cut(s)	585
Hsp92II	CATG	6 cut(s)	97, 128, 173, 519, 540, 560
HspAI	GCGC	1 cut(s)	429
Kzo9I	GATC	1 cut(s)	166
LmnI	GCTCC	1 cut(s)	301
LpnPI	CCDG	7 cut(s)	24, 135, 211, 238, 292, 493, 597
Lsp1109I	GCAGC	1 cut(s)	527
LweI	GCATC	1 cut(s)	614
MaeI	CTAG	1 cut(s)	236
MalI	GATC	1 cut(s)	168
MboI	GATC	1 cut(s)	166
MboII	GAAGA	4 cut(s)	92, 336, 431, 467
MfeI	CAATTG	1 cut(s)	54
MluCI	AATT	5 cut(s)	54, 120, 445, 462, 491
MlyI	GAGTC	2 cut(s)	506, 643
MnlI	CCTC	3 cut(s)	175, 580, 619
MseI	TTAA	3 cut(s)	281, 468, 643
MslI	CAYNNNNRTG	1 cut(s)	174
MspR9I	CCNGG	1 cut(s)	226
MunI	CAATTG	1 cut(s)	54
Mva1269I	GAATGC	3 cut(s)	31, 197, 413
MvaI	CCWGG	1 cut(s)	226
MwoI	GCNNNNNNNGC	4 cut(s)	35, 293, 435, 549
NdeII	GATC	1 cut(s)	166
NheI	GCTAGC	1 cut(s)	235
NlaIII	CATG	6 cut(s)	97, 128, 173, 519, 540, 560
NlaIV	GGNNCC	1 cut(s)	49
NspI	RCATGY	1 cut(s)	540
PctI	GAATGC	3 cut(s)	31, 197, 413
PfeI	GAWTC	1 cut(s)	580
PkrI	GCNGC	2 cut(s)	52, 542
PleI	GAGTC	2 cut(s)	506, 642
PpsI	GAGTC	2 cut(s)	506, 642
PshBI	ATTAAT	1 cut(s)	281
Psp6I	CCWGG	1 cut(s)	224
PspGI	CCWGG	1 cut(s)	224
PspN4I	GGNNCC	1 cut(s)	49
RsaI	GTAC	2 cut(s)	21, 314
RsaNI	GTAC	2 cut(s)	20, 313
RseI	CAYNNNNRTG	1 cut(s)	174
SaqAI	TTAA	3 cut(s)	281, 468, 643
SatI	GCNGC	2 cut(s)	51, 541
Sau3AI	GATC	1 cut(s)	166
SchI	GAGTC	2 cut(s)	506, 643
ScrFI	CCNGG	1 cut(s)	226
SetI	ASST	6 cut(s)	154, 241, 360, 370, 506, 591
SfaNI	GCATC	1 cut(s)	614
SmiMI	CAYNNNNRTG	1 cut(s)	174
SmlI	CTYRAG	1 cut(s)	440
SmoI	CTYRAG	1 cut(s)	440
Sse9I	AATT	5 cut(s)	54, 120, 445, 462, 491
SsiI	CCGC	1 cut(s)	51
SspMI	CTAG	1 cut(s)	236
StyD4I	CCNGG	1 cut(s)	224
TaaI	ACNGT	4 cut(s)	107, 232, 416, 630
TasI	AATT	5 cut(s)	54, 120, 445, 462, 491
TatI	WGTACW	1 cut(s)	312
TauI	GCSGC	1 cut(s)	53
TfiI	GAWTC	1 cut(s)	580
Tru1I	TTAA	3 cut(s)	281, 468, 643
Tru9I	TTAA	3 cut(s)	281, 468, 643
TscAI	CASTG	2 cut(s)	311, 421
TseI	GCWGC	1 cut(s)	540
TspDTI	ATGAA	3 cut(s)	113, 247, 485
TspGWI	ACGGA	1 cut(s)	37
TspRI	CASTG	2 cut(s)	311, 421
VspI	ATTAAT	1 cut(s)	281
XapI	RAATTY	2 cut(s)	462, 491
XceI	RCATGY	1 cut(s)	540
XspI	CTAG	1 cut(s)	236

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.