pycom02g10150

Receptor homology region, transmembrane domain- and RING domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0008527
Physical Location & Seq
Reverse (-)
7014969 .. 7015319
351 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g10150.1

Sequence Viewer

Length: 351 bp
ATGCTAAAGGAACATGCTCGTGGGGAAGAAGGGGAATGCTGCATCTTCGTATTACCAAATGAAAAGGCCTGGTCGGTGTTCGCTGTATCTTTCATCTCATTTCTAACTGTATTGGGTCTCCTTGTGATTGCCATCTGTGCTCAGAGAAACTGGGGCTGGCCCTACTCTCAAGGAAGAAACCAACTTCCTAAAAGTGCGGATACCAAGATTGTGGATGCTCTACCTTGCTTCACATTCAGTTCTGCTGGTTTGGATGAATGCCACACTGAAGAAACTTGTGCCATCTGCCTTGAGAATTACAAAGATTCCGAAATTCTTAAAGTTCTCCCCTGCCAACATGGTAAGTTATAA

Protein Analysis

117

Amino Acids

12.92

Weight (kDa)

5.28

Isoelectric Point (pI)

33.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_11 PF17123 93 - 113 1e-05 RING-like zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 349
AciI CCGC 1 cut(s) 197
AcsI RAATTY 1 cut(s) 312
AcuI CTGAAG 1 cut(s) 288
AjnI CCWGG 1 cut(s) 68
Alw21I GWGCWC 1 cut(s) 142
Alw26I GTCTC 1 cut(s) 122
AoxI GGCC 2 cut(s) 66, 158
ApeKI GCWGC 1 cut(s) 39
ApoI RAATTY 1 cut(s) 312
AspS9I GGNCC 1 cut(s) 159
BauI CACGAG 1 cut(s) 18
Bbv12I GWGCWC 1 cut(s) 142
BbvI GCAGC 1 cut(s) 26
BccI CCATC 2 cut(s) 140, 290
BciT130I CCWGG 1 cut(s) 70
BciVI GTATCC 1 cut(s) 193
BcoDI GTCTC 1 cut(s) 122
BfuI GTATCC 1 cut(s) 193
BisI GCNGC 1 cut(s) 40
BlsI GCNGC 1 cut(s) 41
Bme1390I CCNGG 1 cut(s) 70
BmgT120I GGNCC 1 cut(s) 159
BmrFI CCNGG 1 cut(s) 70
BmrI ACTGGG 1 cut(s) 160
BmsI GCATC 2 cut(s) 51, 205
BmuI ACTGGG 1 cut(s) 160
BpuEI CTTGAG 2 cut(s) 153, 311
BsaBI GATNNNNATC 1 cut(s) 131
BsaI GGTCTC 1 cut(s) 122
Bse1I ACTGG 1 cut(s) 155
Bse8I GATNNNNATC 1 cut(s) 131
BseBI CCWGG 1 cut(s) 70
BseGI GGATG 2 cut(s) 220, 259
BseJI GATNNNNATC 1 cut(s) 131
BseMII CTCAG 1 cut(s) 155
BseNI ACTGG 1 cut(s) 155
BseXI GCAGC 1 cut(s) 26
BshFI GGCC 2 cut(s) 68, 160
BsiHKAI GWGCWC 1 cut(s) 142
BsmAI GTCTC 1 cut(s) 122
BsmI GAATGC 2 cut(s) 41, 263
BsnI GGCC 2 cut(s) 68, 160
Bso31I GGTCTC 1 cut(s) 122
Bsp1286I GDGCHC 1 cut(s) 142
BspACI CCGC 1 cut(s) 197
BspANI GGCC 2 cut(s) 68, 160
BspCNI CTCAG 1 cut(s) 154
BspTNI GGTCTC 1 cut(s) 122
BsrI ACTGG 1 cut(s) 155
BssSI CACGAG 1 cut(s) 18
Bst2BI CACGAG 1 cut(s) 18
Bst2UI CCWGG 1 cut(s) 70
Bst4CI ACNGT 1 cut(s) 109
BstC8I GCNNGC 1 cut(s) 158
BstDEI CTNAG 1 cut(s) 141
BstF5I GGATG 2 cut(s) 220, 259
BstMAI GTCTC 1 cut(s) 122
BstMWI GCNNNNNNNGC 1 cut(s) 137
BstNI CCWGG 1 cut(s) 70
BstNSI RCATGY 1 cut(s) 17
BstSCI CCNGG 1 cut(s) 68
BstV1I GCAGC 1 cut(s) 26
BstXI CCANNNNNNTGG 1 cut(s) 211
BsuI GTATCC 1 cut(s) 193
BsuRI GGCC 2 cut(s) 68, 160
BtsCI GGATG 2 cut(s) 220, 259
BtsIMutI CAGTG 1 cut(s) 264
Cac8I GCNNGC 1 cut(s) 158
Cfr13I GGNCC 1 cut(s) 159
CviAII CATG 2 cut(s) 14, 338
CviJI RGCY 3 cut(s) 68, 156, 160
CviKI_1 RGCY 3 cut(s) 68, 156, 160
DdeI CTNAG 1 cut(s) 141
Eco147I AGGCCT 1 cut(s) 68
Eco31I GGTCTC 1 cut(s) 122
Eco57I CTGAAG 1 cut(s) 288
EcoRII CCWGG 1 cut(s) 68
FaeI CATG 2 cut(s) 17, 341
FaiI YATR 3 cut(s) 15, 339, 349
FatI CATG 2 cut(s) 13, 337
Fnu4HI GCNGC 1 cut(s) 40
FokI GGATG 2 cut(s) 227, 266
Fsp4HI GCNGC 1 cut(s) 40
GluI GCNGC 1 cut(s) 40
HaeIII GGCC 2 cut(s) 68, 160
Hin1II CATG 2 cut(s) 17, 341
HinfI GANTC 1 cut(s) 305
Hpy188I TCNGA 2 cut(s) 144, 310
HpyAV CCTTC 1 cut(s) 23
HpyCH4III ACNGT 1 cut(s) 109
HpyCH4V TGCA 1 cut(s) 42
HpyF10VI GCNNNNNNNGC 1 cut(s) 137
HpyF3I CTNAG 1 cut(s) 141
Hsp92II CATG 2 cut(s) 17, 341
LpnPI CCDG 6 cut(s) 55, 82, 136, 142, 231, 343
Lsp1109I GCAGC 1 cut(s) 26
LweI GCATC 2 cut(s) 51, 205
MboII GAAGA 4 cut(s) 37, 38, 186, 281
MhlI GDGCHC 1 cut(s) 142
MluCI AATT 2 cut(s) 295, 312
MseI TTAA 1 cut(s) 318
MslI CAYNNNNRTG 1 cut(s) 18
MspR9I CCNGG 1 cut(s) 70
Mva1269I GAATGC 2 cut(s) 41, 263
MvaI CCWGG 1 cut(s) 70
MwoI GCNNNNNNNGC 1 cut(s) 137
NlaIII CATG 2 cut(s) 17, 341
NspI RCATGY 1 cut(s) 17
PceI AGGCCT 1 cut(s) 68
PctI GAATGC 2 cut(s) 41, 263
PfeI GAWTC 1 cut(s) 305
PkrI GCNGC 1 cut(s) 41
PsiI TTATAA 1 cut(s) 349
Psp6I CCWGG 1 cut(s) 68
PspGI CCWGG 1 cut(s) 68
PspPI GGNCC 1 cut(s) 159
RseI CAYNNNNRTG 1 cut(s) 18
SaqAI TTAA 1 cut(s) 318
SatI GCNGC 1 cut(s) 40
Sau96I GGNCC 1 cut(s) 159
ScrFI CCNGG 1 cut(s) 70
SduI GDGCHC 1 cut(s) 142
SetI ASST 1 cut(s) 226
SfaNI GCATC 2 cut(s) 51, 205
SmiMI CAYNNNNRTG 1 cut(s) 18
SmlI CTYRAG 2 cut(s) 168, 290
SmoI CTYRAG 2 cut(s) 168, 290
Sse9I AATT 2 cut(s) 295, 312
SseBI AGGCCT 1 cut(s) 68
SsiI CCGC 1 cut(s) 197
StuI AGGCCT 1 cut(s) 68
StyD4I CCNGG 1 cut(s) 68
TaaI ACNGT 1 cut(s) 109
TasI AATT 2 cut(s) 295, 312
TfiI GAWTC 1 cut(s) 305
Tru1I TTAA 1 cut(s) 318
Tru9I TTAA 1 cut(s) 318
TscAI CASTG 1 cut(s) 271
TseI GCWGC 1 cut(s) 39
TspDTI ATGAA 3 cut(s) 75, 82, 270
TspRI CASTG 1 cut(s) 271
XapI RAATTY 1 cut(s) 312
XceI RCATGY 1 cut(s) 17
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.