Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0008527

Physical Location & Seq

Genomic Coordinates Forward (+)

17221611 .. 17224912

Gene Structure 3302 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G170000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGAGGCAAGCTTTTCTGGGATTATGTTTGCTTGTTTTTGCTCACCTTGTCCAACTAACCTCAGCTATTGTCGTTCTCAAACCATTTGCCAGGGAGTTCTCGGACCTTCCCGCCAAATTTGCTATTGCTGTCAATAGCTCTGGTATATGTGGAGCTTTGCTTATATCAGACCCTTTGGACGCCTGCTCATCTCTACGCAATGGACTTCGACCAAACGAAACTGATAAAACAAGGTTTGCTTTGATAGTTAGAGGTGAATGTGCTTTCAAGGATAAAGTCCAAAATGCTCAAAATGCCGGATTTCGTGGTGCTATTGTTTATGACGATAGAGATAAAGGCAAATTGGTCTACATGATGATAGAGAGTGCAAATGTTACAATTCATGCTGTATTTGTTTCGAAAGCATCGGGTGAAGTGTTAAAGGAGCATGCTCTAGGGGAAGAAGGGGAATGCTGCATCTTCCCATTTCAAAATGAAACAGCTTGGACGGTTCTAGCTATATCTTTTATCTCATTTCTTGTCATATTGGGTATACTTATAATAGCCATCTTTGGTCCGAGACACTGGCTCTATTCTCAAGGAAGAAACCAGCTTCCTAAAAGTGTGGATACCAAGATTGTGGAAGCTCTACCTTGCTTCACATTTAGTTCCACTGGTTTGGGTGAATGCCACAGTGAAGAAACTTGTGCCATCTGCCTTGAGAATTACAAAGATGAGGAAATTCTTAAAGTTCTTCCCTGCCAACATGAATTTCATTCAAGCTGTGTGGATTCATGGCTGACAAAATGGGGGACATTCTGCCCCGTGTGCAAGCATGATATGAGAACCAAAATTGTGAATCCCGAGATCAAAAGAAGGACCTGGTTGTACAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000306 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0019898 GO:0031090 GO:0031312 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043621 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PA Rhodanese zf-RING_11 zf-RING_2

Protein Analysis

292

Amino Acids

32.46

Weight (kDa)

6.7

Isoelectric Point (pI)

34.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008527)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66160 AT5G66160
fragaria_vesca	FvH4_1g11650 FvH4_1g11650
malus_domestica	MD02G1129600.v1.1 MD15G1243900.v1.1
prunus_persica	Prupe.7G170000_v2.0.a1 Prupe.7G170000_v2.0.a1
pyrus_communis	pycom02g10150 pycom15g21480
rosa_chinensis	RchiOBHm_Chr2g0099241
rosa_laevigata	RLG00000016864
rosa_multiflora	Rmu_sc0002025.1_g000005
rosa_roxburghii	Rroxscaffold_2G00143290
rosa_rugosa	Rorug02G0078100
rosa_samantha	Rh2AG127300 Rh2BG130300 Rh2BG510800 Rh2CG131500 Rh2DG131900 Rh2DG522500 Rh5AG471500
rosa_wichuraiana	Rw2G009820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	539
AccI	GTMKAC	2 cut(s)	348, 532
AciI	CCGC	1 cut(s)	111
AcsI	RAATTY	3 cut(s)	116, 720, 749
AcyI	GRCGYC	1 cut(s)	180
AfaI	GTAC	1 cut(s)	869
AgsI	TTSAA	3 cut(s)	268, 470, 759
AjnI	CCWGG	2 cut(s)	89, 860
AjuI	GAANNNNNNNTTGG	2 cut(s)	735, 767
AluBI	AGCT	9 cut(s)	11, 65, 138, 155, 482, 497, 592, 626, 762
AluI	AGCT	9 cut(s)	11, 65, 138, 155, 482, 497, 592, 626, 762
Alw26I	GTCTC	1 cut(s)	553
Ama87I	CYCGRG	1 cut(s)	842
ApeKI	GCWGC	1 cut(s)	453
ApoI	RAATTY	3 cut(s)	116, 720, 749
AspS9I	GGNCC	3 cut(s)	103, 554, 858
AsuHPI	GGTGA	4 cut(s)	35, 266, 422, 674
AsuII	TTCGAA	1 cut(s)	398
AvaI	CYCGRG	1 cut(s)	842
AvaII	GGWCC	3 cut(s)	103, 554, 858
BbvCI	CCTCAGC	1 cut(s)	61
BbvI	GCAGC	1 cut(s)	440
BccI	CCATC	2 cut(s)	554, 698
BciT130I	CCWGG	2 cut(s)	91, 862
BciVI	GTATCC	1 cut(s)	601
BcoDI	GTCTC	1 cut(s)	553
BfaI	CTAG	2 cut(s)	434, 494
BfuI	GTATCC	1 cut(s)	601
BisI	GCNGC	1 cut(s)	454
BlsI	GCNGC	1 cut(s)	455
Bme1390I	CCNGG	2 cut(s)	91, 862
Bme18I	GGWCC	3 cut(s)	103, 554, 858
BmeT110I	CYCGRG	1 cut(s)	842
BmgT120I	GGNCC	3 cut(s)	103, 554, 858
BmrFI	CCNGG	2 cut(s)	91, 862
BmsI	GCATC	2 cut(s)	413, 465
Bpu10I	CCTNAGC	1 cut(s)	61
Bpu14I	TTCGAA	1 cut(s)	398
BpuEI	CTTGAG	2 cut(s)	561, 719
BsaHI	GRCGYC	1 cut(s)	180
BsaJI	CCNNGG	1 cut(s)	90
Bse1I	ACTGG	2 cut(s)	569, 658
Bse3DI	GCAATG	1 cut(s)	205
BseBI	CCWGG	2 cut(s)	91, 862
BseDI	CCNNGG	1 cut(s)	90
BseMI	GCAATG	1 cut(s)	205
BseMII	CTCAG	1 cut(s)	75
BseNI	ACTGG	2 cut(s)	569, 658
BseXI	GCAGC	1 cut(s)	440
BsiHKCI	CYCGRG	1 cut(s)	842
BsiSI	CCGG	1 cut(s)	297
BslFI	GGGAC	1 cut(s)	805
BsmAI	GTCTC	1 cut(s)	553
BsmFI	GGGAC	1 cut(s)	805
BsmI	GAATGC	2 cut(s)	455, 671
BsoBI	CYCGRG	1 cut(s)	842
Bsp119I	TTCGAA	1 cut(s)	398
Bsp1407I	TGTACA	1 cut(s)	867
Bsp143I	GATC	1 cut(s)	846
BspACI	CCGC	1 cut(s)	111
BspCNI	CTCAG	1 cut(s)	74
BspT104I	TTCGAA	1 cut(s)	398
BsrDI	GCAATG	1 cut(s)	205
BsrGI	TGTACA	1 cut(s)	867
BsrI	ACTGG	2 cut(s)	569, 658
BssECI	CCNNGG	1 cut(s)	90
BssMI	GATC	1 cut(s)	846
BssNAI	GTATAC	1 cut(s)	533
BssNI	GRCGYC	1 cut(s)	180
Bst1107I	GTATAC	1 cut(s)	533
Bst2UI	CCWGG	2 cut(s)	91, 862
Bst4CI	ACNGT	3 cut(s)	490, 674, 872
BstACI	GRCGYC	1 cut(s)	180
BstAUI	TGTACA	1 cut(s)	867
BstBI	TTCGAA	1 cut(s)	398
BstC8I	GCNNGC	4 cut(s)	9, 184, 429, 812
BstDEI	CTNAG	1 cut(s)	61
BstKTI	GATC	1 cut(s)	849
BstMAI	GTCTC	1 cut(s)	553
BstMBI	GATC	1 cut(s)	846
BstMWI	GCNNNNNNNGC	3 cut(s)	119, 293, 807
BstNI	CCWGG	2 cut(s)	91, 862
BstNSI	RCATGY	1 cut(s)	431
BstSCI	CCNGG	2 cut(s)	89, 860
BstV1I	GCAGC	1 cut(s)	440
BstXI	CCANNNNNNTGG	2 cut(s)	619, 658
BstZ17I	GTATAC	1 cut(s)	533
BsuI	GTATCC	1 cut(s)	601
BtsIMutI	CAGTG	3 cut(s)	562, 651, 679
Cac8I	GCNNGC	4 cut(s)	9, 184, 429, 812
Cfr13I	GGNCC	3 cut(s)	103, 554, 858
CseI	GACGC	1 cut(s)	188
CsiI	ACCWGGT	1 cut(s)	860
Csp6I	GTAC	1 cut(s)	868
CspCI	CAANNNNNGTGG	2 cut(s)	747, 782
CviAII	CATG	6 cut(s)	352, 383, 428, 746, 774, 815
CviQI	GTAC	1 cut(s)	868
DdeI	CTNAG	1 cut(s)	61
DpnI	GATC	1 cut(s)	848
DpnII	GATC	1 cut(s)	846
Eco47I	GGWCC	3 cut(s)	103, 554, 858
Eco88I	CYCGRG	1 cut(s)	842
EcoO109I	RGGNCCY	1 cut(s)	858
EcoRII	CCWGG	2 cut(s)	89, 860
FaeI	CATG	6 cut(s)	355, 386, 431, 749, 777, 818
FalI	AAGNNNNNCTT	2 cut(s)	223, 255
FaqI	GGGAC	1 cut(s)	805
FatI	CATG	6 cut(s)	351, 382, 427, 745, 773, 814
FauI	CCCGC	1 cut(s)	118
FblI	GTMKAC	2 cut(s)	348, 532
Fnu4HI	GCNGC	1 cut(s)	454
Fsp4HI	GCNGC	1 cut(s)	454
FspBI	CTAG	2 cut(s)	434, 494
GluI	GCNGC	1 cut(s)	454
HapII	CCGG	1 cut(s)	297
HgaI	GACGC	1 cut(s)	188
Hin1I	GRCGYC	1 cut(s)	180
Hin1II	CATG	6 cut(s)	355, 386, 431, 749, 777, 818
HindIII	AAGCTT	1 cut(s)	9
HinfI	GANTC	2 cut(s)	770, 838
HpaII	CCGG	1 cut(s)	297
HphI	GGTGA	4 cut(s)	35, 266, 422, 674
Hpy166II	GTNNAC	2 cut(s)	349, 533
Hpy188I	TCNGA	3 cut(s)	103, 169, 558
Hpy188III	TCNNGA	1 cut(s)	842
Hpy8I	GTNNAC	2 cut(s)	349, 533
HpyAV	CCTTC	3 cut(s)	116, 437, 849
HpyCH4III	ACNGT	3 cut(s)	490, 674, 872
HpyCH4V	TGCA	3 cut(s)	368, 456, 810
HpyF10VI	GCNNNNNNNGC	3 cut(s)	119, 293, 807
HpyF3I	CTNAG	1 cut(s)	61
Hsp92I	GRCGYC	1 cut(s)	180
Hsp92II	CATG	6 cut(s)	355, 386, 431, 749, 777, 818
Kzo9I	GATC	1 cut(s)	846
LmnI	GCTCC	2 cut(s)	152, 424
Lsp1109I	GCAGC	1 cut(s)	440
LweI	GCATC	2 cut(s)	413, 465
MabI	ACCWGGT	1 cut(s)	860
MaeI	CTAG	2 cut(s)	434, 494
MaeIII	GTNAC	1 cut(s)	373
MalI	GATC	1 cut(s)	848
MboI	GATC	1 cut(s)	846
MboII	GAAGA	5 cut(s)	451, 452, 594, 689, 725
MluCI	AATT	7 cut(s)	116, 341, 378, 703, 720, 749, 831
MmeI	TCCRAC	1 cut(s)	76
MnlI	CCTC	3 cut(s)	70, 245, 709
MseI	TTAA	2 cut(s)	419, 726
MspI	CCGG	1 cut(s)	297
MspR9I	CCNGG	2 cut(s)	91, 862
Mva1269I	GAATGC	2 cut(s)	455, 671
MvaI	CCWGG	2 cut(s)	91, 862
MwoI	GCNNNNNNNGC	3 cut(s)	119, 293, 807
NdeII	GATC	1 cut(s)	846
NlaIII	CATG	6 cut(s)	355, 386, 431, 749, 777, 818
NspI	RCATGY	1 cut(s)	431
NspV	TTCGAA	1 cut(s)	398
PaeI	GCATGC	1 cut(s)	431
PctI	GAATGC	2 cut(s)	455, 671
PfeI	GAWTC	2 cut(s)	770, 838
PkrI	GCNGC	1 cut(s)	455
PpuMI	RGGWCCY	1 cut(s)	858
PsiI	TTATAA	1 cut(s)	539
Psp5II	RGGWCCY	1 cut(s)	858
Psp6I	CCWGG	2 cut(s)	89, 860
PspGI	CCWGG	2 cut(s)	89, 860
PspPI	GGNCC	3 cut(s)	103, 554, 858
PspPPI	RGGWCCY	1 cut(s)	858
RsaI	GTAC	1 cut(s)	869
RsaNI	GTAC	1 cut(s)	868
SaqAI	TTAA	2 cut(s)	419, 726
SatI	GCNGC	1 cut(s)	454
Sau3AI	GATC	1 cut(s)	846
Sau96I	GGNCC	3 cut(s)	103, 554, 858
ScrFI	CCNGG	2 cut(s)	91, 862
SexAI	ACCWGGT	1 cut(s)	860
SfaNI	GCATC	2 cut(s)	413, 465
SfuI	TTCGAA	1 cut(s)	398
SinI	GGWCC	3 cut(s)	103, 554, 858
SmlI	CTYRAG	2 cut(s)	576, 698
SmoI	CTYRAG	2 cut(s)	576, 698
SphI	GCATGC	1 cut(s)	431
Sse9I	AATT	7 cut(s)	116, 341, 378, 703, 720, 749, 831
SsiI	CCGC	1 cut(s)	111
SspMI	CTAG	2 cut(s)	434, 494
StyD4I	CCNGG	2 cut(s)	89, 860
TaaI	ACNGT	3 cut(s)	490, 674, 872
TaqI	TCGA	2 cut(s)	208, 398
TasI	AATT	7 cut(s)	116, 341, 378, 703, 720, 749, 831
TatI	WGTACW	1 cut(s)	867
TfiI	GAWTC	2 cut(s)	770, 838
Tru1I	TTAA	2 cut(s)	419, 726
Tru9I	TTAA	2 cut(s)	419, 726
TscAI	CASTG	3 cut(s)	569, 658, 679
TseI	GCWGC	1 cut(s)	453
TspDTI	ATGAA	5 cut(s)	371, 489, 743, 762, 762
TspRI	CASTG	3 cut(s)	569, 658, 679
VpaK11BI	GGWCC	3 cut(s)	103, 554, 858
XapI	RAATTY	3 cut(s)	116, 720, 749
XceI	RCATGY	1 cut(s)	431
XmiI	GTMKAC	2 cut(s)	348, 532
XspI	CTAG	2 cut(s)	434, 494

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.