Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0008527

Physical Location & Seq

Genomic Coordinates Reverse (-)

15420679 .. 15422842

Gene Structure 2164 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g21480.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGGGGCAAGCTGTAGTGGGATTCTCTGTGATTGCTTGCTTTTTCCTTCTCCAACTAAGCACTGCTAATGTTGTTCTCCAACCATCTGGAATTCTTGTCGCCGACCTTCCCGCCAAATTTGCTGGTGCTGTCAGTAGCTCTGAAATATGTGGAGTTTTGCTTGTGTCCGACCCTTTGCATGCCTGCTCGCCTCTACGCAATGGTCTTCAAGCAAGTGAAACCGATATAACGAGGTTTGCTTTAGTAGAAAGAGGTGAATGCCCTTTCGAGGATAAAGTGCAACACGCTCAAAATGCCGGATTTCGTGCTGTGATTGTTTATGATGATAGGAAAGAAAAATTGGTTCACATGACGATAAACAGCAAGAATGTTACAATTCGTTCTGTATTTGTTTCGAAAGCATCTGGTGAAATGCTAAAGGAGCATGCTCGTGGGGAAGAAGGGGAATGCTGCATCTTCCTATTGCCAAATGAAAAGGCCTGGTTGGTGTTTGCTGTATCGATCTCATTTCTAACCGTATTGGGTCTCCTTATAATTGCCTGCTGTGCTCAGAGAGACTGGCGCTGGCCCTATTCTCAAGGAAGAAACCAGCTTCCTAAAAGTGCGGATACCGAGATTGTTGATGCTCTCCCTTGCTTCACATTCAGTTCTGCTGGTTTGGATGAATCCCACATTGAAGAAACTTGCGCCATCTGCCTTGAGAATTACAAAGATTCCGAAATTCTTAAAGTTCTTCCCTGCCAGCATGAATTTCATTCAAGTTGTGTGGATTCATGGCTGAAAAAATGGGGAAGAAACTGCCCAGTGTGCAAGCATGATATACGAAAGAAAATTGCGACTGCCGAGATCAAGAGAAAATCCTGGTTATACAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000306 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0019898 GO:0031090 GO:0031312 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043621 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PA Rhodanese zf-RING_11 zf-RING_2

Protein Analysis

292

Amino Acids

32.31

Weight (kDa)

6.45

Isoelectric Point (pI)

47.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008527)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66160 AT5G66160
fragaria_vesca	FvH4_1g11650 FvH4_1g11650
malus_domestica	MD02G1129600.v1.1 MD15G1243900.v1.1
prunus_persica	Prupe.7G170000_v2.0.a1 Prupe.7G170000_v2.0.a1
pyrus_communis	pycom02g10150 pycom15g21480
rosa_chinensis	RchiOBHm_Chr2g0099241
rosa_laevigata	RLG00000016864
rosa_multiflora	Rmu_sc0002025.1_g000005
rosa_roxburghii	Rroxscaffold_2G00143290
rosa_rugosa	Rorug02G0078100
rosa_samantha	Rh2AG127300 Rh2BG130300 Rh2BG510800 Rh2CG131500 Rh2DG131900 Rh2DG522500 Rh5AG471500
rosa_wichuraiana	Rw2G009820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	533
AciI	CCGC	2 cut(s)	111, 605
AcsI	RAATTY	4 cut(s)	90, 116, 720, 749
AfiI	CCNNNNNNNGG	1 cut(s)	268
AgsI	TTSAA	3 cut(s)	209, 677, 759
AjnI	CCWGG	2 cut(s)	479, 860
AjuI	GAANNNNNNNTTGG	2 cut(s)	323, 355
AluBI	AGCT	3 cut(s)	11, 138, 592
AluI	AGCT	3 cut(s)	11, 138, 592
Alw21I	GWGCWC	1 cut(s)	550
Alw26I	GTCTC	2 cut(s)	530, 549
AoxI	GGCC	2 cut(s)	477, 566
ApeKI	GCWGC	1 cut(s)	450
ApoI	RAATTY	4 cut(s)	90, 116, 720, 749
AspLEI	GCGC	2 cut(s)	564, 689
AspS9I	GGNCC	1 cut(s)	567
AsuHPI	GGTGA	2 cut(s)	266, 419
AsuII	TTCGAA	1 cut(s)	395
BauI	CACGAG	1 cut(s)	429
BbsI	GAAGAC	1 cut(s)	197
Bbv12I	GWGCWC	1 cut(s)	550
BbvI	GCAGC	1 cut(s)	437
BccI	CCATC	2 cut(s)	91, 698
BciT130I	CCWGG	2 cut(s)	481, 862
BciVI	GTATCC	1 cut(s)	601
BcoDI	GTCTC	2 cut(s)	530, 549
BfmI	CTRYAG	1 cut(s)	12
BfoI	RGCGCY	1 cut(s)	565
BfuI	GTATCC	1 cut(s)	601
BisI	GCNGC	1 cut(s)	451
BlsI	GCNGC	1 cut(s)	452
Bme1390I	CCNGG	2 cut(s)	481, 862
BmgT120I	GGNCC	1 cut(s)	567
BmrFI	CCNGG	2 cut(s)	481, 862
BmrI	ACTGGG	1 cut(s)	797
BmsI	GCATC	3 cut(s)	410, 462, 613
BmuI	ACTGGG	1 cut(s)	797
BpiI	GAAGAC	1 cut(s)	197
Bpu14I	TTCGAA	1 cut(s)	395
BpuEI	CTTGAG	2 cut(s)	561, 719
Bsa29I	ATCGAT	1 cut(s)	500
BsaI	GGTCTC	1 cut(s)	530
Bsc4I	CCNNNNNNNGG	1 cut(s)	268
Bse1I	ACTGG	2 cut(s)	563, 803
Bse3DI	GCAATG	1 cut(s)	205
BseBI	CCWGG	2 cut(s)	481, 862
BseCI	ATCGAT	1 cut(s)	500
BseGI	GGATG	1 cut(s)	667
BseLI	CCNNNNNNNGG	1 cut(s)	268
BseMI	GCAATG	1 cut(s)	205
BseMII	CTCAG	1 cut(s)	563
BseNI	ACTGG	2 cut(s)	563, 803
BseXI	GCAGC	1 cut(s)	437
BshFI	GGCC	2 cut(s)	479, 568
BshVI	ATCGAT	1 cut(s)	500
BsiHKAI	GWGCWC	1 cut(s)	550
BsiSI	CCGG	1 cut(s)	297
BslI	CCNNNNNNNGG	1 cut(s)	268
BsmAI	GTCTC	2 cut(s)	530, 549
BsmI	GAATGC	2 cut(s)	263, 452
BsnI	GGCC	2 cut(s)	479, 568
Bso31I	GGTCTC	1 cut(s)	530
Bsp119I	TTCGAA	1 cut(s)	395
Bsp1286I	GDGCHC	1 cut(s)	550
Bsp143I	GATC	2 cut(s)	501, 846
BspACI	CCGC	2 cut(s)	111, 605
BspANI	GGCC	2 cut(s)	479, 568
BspCNI	CTCAG	1 cut(s)	562
BspDI	ATCGAT	1 cut(s)	500
BspT104I	TTCGAA	1 cut(s)	395
BspTNI	GGTCTC	1 cut(s)	530
BsrDI	GCAATG	1 cut(s)	205
BsrI	ACTGG	2 cut(s)	563, 803
BssMI	GATC	2 cut(s)	501, 846
BssSI	CACGAG	1 cut(s)	429
Bst2BI	CACGAG	1 cut(s)	429
Bst2UI	CCWGG	2 cut(s)	481, 862
Bst4CI	ACNGT	1 cut(s)	517
BstBI	TTCGAA	1 cut(s)	395
BstDEI	CTNAG	2 cut(s)	56, 549
BstF5I	GGATG	1 cut(s)	667
BstH2I	RGCGCY	1 cut(s)	565
BstHHI	GCGC	2 cut(s)	564, 689
BstKTI	GATC	2 cut(s)	504, 849
BstMAI	GTCTC	2 cut(s)	530, 549
BstMBI	GATC	2 cut(s)	501, 846
BstMWI	GCNNNNNNNGC	6 cut(s)	119, 293, 421, 545, 693, 807
BstNI	CCWGG	2 cut(s)	481, 862
BstNSI	RCATGY	2 cut(s)	182, 428
BstSCI	CCNGG	2 cut(s)	479, 860
BstSFI	CTRYAG	1 cut(s)	12
BstV1I	GCAGC	1 cut(s)	437
BstV2I	GAAGAC	1 cut(s)	197
BstXI	CCANNNNNNTGG	1 cut(s)	86
Bsu15I	ATCGAT	1 cut(s)	500
BsuI	GTATCC	1 cut(s)	601
BsuRI	GGCC	2 cut(s)	479, 568
BsuTUI	ATCGAT	1 cut(s)	500
BtsCI	GGATG	1 cut(s)	667
BtsI	GCAGTG	1 cut(s)	60
BtsIMutI	CAGTG	2 cut(s)	60, 810
CfoI	GCGC	2 cut(s)	564, 689
Cfr13I	GGNCC	1 cut(s)	567
ClaI	ATCGAT	1 cut(s)	500
CspCI	CAANNNNNGTGG	2 cut(s)	747, 782
CviAII	CATG	6 cut(s)	179, 349, 425, 746, 774, 815
CviJI	RGCY	6 cut(s)	11, 138, 479, 568, 592, 778
CviKI_1	RGCY	6 cut(s)	11, 138, 479, 568, 592, 778
DdeI	CTNAG	2 cut(s)	56, 549
DpnI	GATC	2 cut(s)	503, 848
DpnII	GATC	2 cut(s)	501, 846
Eco147I	AGGCCT	1 cut(s)	479
Eco31I	GGTCTC	1 cut(s)	530
EcoRI	GAATTC	1 cut(s)	90
EcoRII	CCWGG	2 cut(s)	479, 860
FaeI	CATG	6 cut(s)	182, 352, 428, 749, 777, 818
FatI	CATG	6 cut(s)	178, 348, 424, 745, 773, 814
FauI	CCCGC	1 cut(s)	118
Fnu4HI	GCNGC	1 cut(s)	451
FokI	GGATG	1 cut(s)	674
Fsp4HI	GCNGC	1 cut(s)	451
GlaI	GCGC	2 cut(s)	563, 688
GluI	GCNGC	1 cut(s)	451
HaeII	RGCGCY	1 cut(s)	565
HaeIII	GGCC	2 cut(s)	479, 568
HapII	CCGG	1 cut(s)	297
HhaI	GCGC	2 cut(s)	564, 689
Hin1II	CATG	6 cut(s)	182, 352, 428, 749, 777, 818
Hin6I	GCGC	2 cut(s)	562, 687
HinP1I	GCGC	2 cut(s)	562, 687
HinfI	GANTC	4 cut(s)	21, 665, 713, 770
HpaII	CCGG	1 cut(s)	297
HphI	GGTGA	2 cut(s)	266, 419
Hpy166II	GTNNAC	1 cut(s)	346
Hpy188I	TCNGA	4 cut(s)	142, 169, 552, 718
Hpy188III	TCNNGA	2 cut(s)	87, 850
Hpy8I	GTNNAC	1 cut(s)	346
HpyAV	CCTTC	3 cut(s)	56, 116, 434
HpyCH4III	ACNGT	1 cut(s)	517
HpyCH4V	TGCA	4 cut(s)	178, 280, 453, 810
HpyF10VI	GCNNNNNNNGC	6 cut(s)	119, 293, 421, 545, 693, 807
HpyF3I	CTNAG	2 cut(s)	56, 549
Hsp92II	CATG	6 cut(s)	182, 352, 428, 749, 777, 818
HspAI	GCGC	2 cut(s)	562, 687
Kzo9I	GATC	2 cut(s)	501, 846
LmnI	GCTCC	1 cut(s)	421
Lsp1109I	GCAGC	1 cut(s)	437
LweI	GCATC	3 cut(s)	410, 462, 613
MaeIII	GTNAC	1 cut(s)	370
MalI	GATC	2 cut(s)	503, 848
MboI	GATC	2 cut(s)	501, 846
MboII	GAAGA	7 cut(s)	197, 448, 449, 594, 689, 725, 804
MhlI	GDGCHC	1 cut(s)	550
MmeI	TCCRAC	3 cut(s)	76, 103, 192
MnlI	CCTC	4 cut(s)	201, 225, 245, 262
MseI	TTAA	1 cut(s)	726
MslI	CAYNNNNRTG	1 cut(s)	429
MspI	CCGG	1 cut(s)	297
MspR9I	CCNGG	2 cut(s)	481, 862
Mva1269I	GAATGC	2 cut(s)	263, 452
MvaI	CCWGG	2 cut(s)	481, 862
MwoI	GCNNNNNNNGC	6 cut(s)	119, 293, 421, 545, 693, 807
NdeII	GATC	2 cut(s)	501, 846
NlaIII	CATG	6 cut(s)	182, 352, 428, 749, 777, 818
NmeAIII	GCCGAG	1 cut(s)	868
NspI	RCATGY	2 cut(s)	182, 428
NspV	TTCGAA	1 cut(s)	395
PaeI	GCATGC	2 cut(s)	182, 428
PceI	AGGCCT	1 cut(s)	479
PctI	GAATGC	2 cut(s)	263, 452
PfeI	GAWTC	4 cut(s)	21, 665, 713, 770
PkrI	GCNGC	1 cut(s)	452
PsiI	TTATAA	1 cut(s)	533
Psp6I	CCWGG	2 cut(s)	479, 860
PspGI	CCWGG	2 cut(s)	479, 860
PspPI	GGNCC	1 cut(s)	567
RseI	CAYNNNNRTG	1 cut(s)	429
SaqAI	TTAA	1 cut(s)	726
SatI	GCNGC	1 cut(s)	451
Sau3AI	GATC	2 cut(s)	501, 846
Sau96I	GGNCC	1 cut(s)	567
ScrFI	CCNGG	2 cut(s)	481, 862
SduI	GDGCHC	1 cut(s)	550
SetI	ASST	6 cut(s)	13, 108, 140, 236, 256, 594
SfaNI	GCATC	3 cut(s)	410, 462, 613
SfcI	CTRYAG	1 cut(s)	12
SfuI	TTCGAA	1 cut(s)	395
SmiMI	CAYNNNNRTG	1 cut(s)	429
SmlI	CTYRAG	2 cut(s)	576, 698
SmoI	CTYRAG	2 cut(s)	576, 698
SphI	GCATGC	2 cut(s)	182, 428
SseBI	AGGCCT	1 cut(s)	479
SsiI	CCGC	2 cut(s)	111, 605
StuI	AGGCCT	1 cut(s)	479
StyD4I	CCNGG	2 cut(s)	479, 860
TaaI	ACNGT	1 cut(s)	517
TaqI	TCGA	3 cut(s)	267, 395, 500
TfiI	GAWTC	4 cut(s)	21, 665, 713, 770
Tru1I	TTAA	1 cut(s)	726
Tru9I	TTAA	1 cut(s)	726
TscAI	CASTG	2 cut(s)	67, 810
TseI	GCWGC	1 cut(s)	450
TspDTI	ATGAA	5 cut(s)	486, 678, 743, 762, 762
TspRI	CASTG	2 cut(s)	67, 810
XapI	RAATTY	4 cut(s)	90, 116, 720, 749
XceI	RCATGY	2 cut(s)	182, 428

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.