Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0014443

Physical Location & Seq

Genomic Coordinates Forward (+)

6888959 .. 6891048

Gene Structure 2090 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g12540.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1953 bp

ATGCAAAACCTCTCCCGCAGATTCTCAACTCTCCAAGTTCCCAAGCTTTCAACCCCACCGCCGCAACCCATCAGACCTTTGTTTCAATACTCGAAGATTCAGCATTGCCGGAAAATCCTTGAGCACAGAATCATCACCGTTCTGGATGTATGCACCACCCTCACCCAAGCCCAGCAGGTCCACGCTCACGTCATCGCCAATGGGCTCAGCCAGTACAGCTACGTCATCACCAAGCTCATCCGCACGCTCACCAAGCTCGGCGTCCCAATGGGGACCTACCCGGAGCTCGTTTTCCGCCGCGTGACGCGCCCCAACCCGTTTCTGTGGGCGGCTATGATCAGAGGATGTGTGATTGAAGGACAGGTTTCGGAAGCAGTGAGGTTTTATGGTTTGATGAGGAGGGAGGGCACGGGTCCGGTTTCGTTCACCTTCTCGTCGTTGTTTAAAGGCTGCGGGAGCGTTGGGGATGTGAGTTTGGGGCGGCAGGTGCATGCGCAGACGGTTGTGATCGGTGGGTTTGCGGCGGATTTGTACGTGGGGAACACTATGATTGATATGTACTTGAAATGTGGGGAGTTGGGTTGTGGGCGGAAGGTGTTTGATGAAATGCCTGAGAGAGATGTGGTGTCGTGGACCGAGCTGATTGCGGTGTATGCCAAGAGTGGGGATATGGGGTCGGCCAGGGAGTTGTTTGAGGAGTTGAGTTTGAAAGATATGGTGGCGTGGACGGCCATGGTTACGGGGTATGCGCAGAATTTGATGCCGAGAGAGGCGTTGGATTGCTTTGAGAGAATGCGGGGCGCTGGTGTGGGGATTGATGAGGTTACTTTGCTCGGGGTTGTTTCGGCTTGTGCGCAGTTGGGTGCGTGTAGGTATGCAAATTGGGTGAGAGGCATTGCTGGGGAATCTGGTTTCGGCCCTGCTGAGAATGTGCTTGTGGGATCTGCGTTGATAGATATGTACGCAAAGTGTGGGAGCTTGGATGATGCGTACGATATTTTCCGAGGAATGAAGCAGAGGAATGTGTTTTCGTATAGCTCAATGATTTGGGGATTTGCAGTGCATGGAAATGCCAATGCGGCAATCGAGTTGTTTCATGAGATGCTGACAACTGATGTTATAAGGCCGAACCGTGTTACTTTTATAGGGGTGCTAACTGCCTGCAGCCATGCGGGGATGGTTGATCAAGGTCGGCAGTTGTTTGCAACCATGGAGAAGTATTACAATGTCACTCCATCAGCTGAACATTACACTTGTATGGTAGACTTGCTTGGTCGAGCTGGTCGCTTGGAAGAAGCTCTCGAGCTAGCTGAGACGATGCCAATAGTCGCGCATGGAGGTGTGTGGGGAGCGCTACTTGGTGCGTGTCGTATCCATAAAAACCCCGGCATTGCTCAAATTGCTGCAAGTCATCTATTTGAGCTTGAACCTAAAAATATCGGAAACTACGTGATGCTCTCCAACATATATGCATCAGCAGGAAGGTGGGGTGATGTTTCAAGTGTTAGGAAGCTGATGAGAGAGAAGGGTCTGAAAAAGAACCCTGCATATAGCTGGGTTGAAACAAAGAATGGAGGTGTCGAAAAGTTTAGTGCAGGTGATACACGTCACCCCGATTACGAAGATATCAAAAAGGCATTGGAGGATCTTCTAAACAGATTACAGGATCATGGTTATAGGCCAAACCTGAATTCGGTGGATTATGATGTGGGGGATGAAGAAAAGATGCGTATATTGATGGCTCATAGCGAGAAACTGGCGTTGGCATACGCATTGCTCAATGCAGACACTGGTCCCACCATTAAGATCATCAAGAACATAAGAATTTGTGAAGATTGTCATGGCTTCATGTGTGGCGCATCACAGGTTACAGGAAGGCATATTATTGTGAGAGATAACATGAGATTCCACCACTTCGAAAATGGGAAATGTAATTGCGGCAATTTTTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

651

Amino Acids

72.11

Weight (kDa)

8.03

Isoelectric Point (pI)

30.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	104 - 151	1.2e-07	PPR repeat family
PPR_2	PF13041	238 - 285	9.1e-06	PPR repeat family
PPR	PF01535	240 - 270	1e-06	PPR repeat
PPR_2	PF13041	340 - 389	6.5e-07	PPR repeat family
E_motif	PF20431	459 - 521	3.7e-21	E motif
DYW_deaminase	PF14432	558 - 650	1.8e-40	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014443)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G44230 AT5G44230
fragaria_vesca	FvH4_1g12540
malus_domestica	MD15G1252800.v1.1
prunus_persica	Prupe.7G161300_v2.0.a1
pyrus_communis	pycom15g22270
rosa_chinensis	RchiOBHm_Chr2g0100491
rosa_laevigata	RLG00000016976
rosa_multiflora	Rmu_sc0000528.1_g000023 Rmu_sc0020397.1_g000001
rosa_roxburghii	Rroxscaffold_2G00142190
rosa_rugosa	Rorug02G0088600
rosa_samantha	Rh2AG138300 Rh2BG141300 Rh2CG143500 Rh2DG143100
rosa_wichuraiana	Rw2G010810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1121
AarI	CACCTGC	2 cut(s)	475, 1586
Acc16I	TGCGCA	3 cut(s)	495, 750, 855
Acc36I	ACCTGC	3 cut(s)	166, 475, 1586
AccI	GTMKAC	1 cut(s)	1263
AccII	CGCG	3 cut(s)	300, 307, 1331
AclWI	GGATC	3 cut(s)	949, 1653, 1674
AcoI	YGGCCR	2 cut(s)	678, 729
AcsI	RAATTY	3 cut(s)	754, 1690, 1824
AcyI	GRCGYC	1 cut(s)	261
AfaI	GTAC	5 cut(s)	215, 533, 560, 962, 992
AfeI	AGCGCT	1 cut(s)	1353
AfiI	CCNNNNNNNGG	2 cut(s)	663, 1693
AflIII	ACRYGT	1 cut(s)	1604
AgsI	TTSAA	8 cut(s)	51, 86, 356, 565, 709, 1427, 1500, 1562
AjiI	CACGTC	2 cut(s)	190, 1607
AjnI	CCWGG	1 cut(s)	680
AjuI	GAANNNNNNNTTGG	4 cut(s)	1675, 1707, 1745, 1777
Alw21I	GWGCWC	2 cut(s)	126, 288
Alw26I	GTCTC	1 cut(s)	1307
AlwI	GGATC	3 cut(s)	949, 1653, 1674
AlwNI	CAGNNNCTG	1 cut(s)	1790
Ama87I	CYCGRG	2 cut(s)	833, 1301
Aor51HI	AGCGCT	1 cut(s)	1353
AoxI	GGCC	5 cut(s)	678, 729, 916, 1124, 1679
ApeKI	GCWGC	3 cut(s)	450, 1164, 1403
ApoI	RAATTY	3 cut(s)	754, 1690, 1824
AspLEI	GCGC	8 cut(s)	309, 496, 751, 803, 856, 1333, 1354, 1859
AspS9I	GGNCC	6 cut(s)	178, 273, 413, 633, 917, 1793
AsuC2I	CCSGG	2 cut(s)	281, 1386
AsuHPI	GGTGA	9 cut(s)	127, 154, 220, 241, 418, 898, 1502, 1601, 1610
AsuII	TTCGAA	1 cut(s)	1917
AsuNHI	GCTAGC	1 cut(s)	1306
AvaI	CYCGRG	2 cut(s)	833, 1301
AvaII	GGWCC	5 cut(s)	178, 273, 413, 633, 1793
BaeGI	GKGCMC	1 cut(s)	410
BanII	GRGCYC	2 cut(s)	207, 288
Bbv12I	GWGCWC	2 cut(s)	126, 288
BbvI	GCAGC	3 cut(s)	437, 1176, 1390
BccI	CCATC	4 cut(s)	77, 1171, 1243, 1732
BceAI	ACGGC	1 cut(s)	744
BcgI	CGANNNNNNTGC	2 cut(s)	626, 660
BciT130I	CCWGG	1 cut(s)	682
BciVI	GTATCC	1 cut(s)	1382
BclI	TGATCA	2 cut(s)	336, 1183
BcnI	CCSGG	2 cut(s)	281, 1386
BcoDI	GTCTC	1 cut(s)	1307
BfaI	CTAG	1 cut(s)	1307
BfmI	CTRYAG	1 cut(s)	1162
BfoI	RGCGCY	2 cut(s)	804, 1355
BfuAI	ACCTGC	3 cut(s)	166, 475, 1586
BfuI	GTATCC	1 cut(s)	1382
BglI	GCCNNNNNGGC	1 cut(s)	1079
BlpI	GCTNAGC	1 cut(s)	206
Bme1390I	CCNGG	3 cut(s)	281, 682, 1386
Bme18I	GGWCC	5 cut(s)	178, 273, 413, 633, 1793
BmeT110I	CYCGRG	2 cut(s)	833, 1301
BmgBI	CACGTC	2 cut(s)	190, 1607
BmgT120I	GGNCC	6 cut(s)	178, 273, 413, 633, 917, 1793
BmiI	GGNNCC	3 cut(s)	274, 414, 1795
BmrFI	CCNGG	3 cut(s)	281, 682, 1386
BmsI	GCATC	8 cut(s)	750, 976, 1092, 1308, 1443, 1481, 1716, 1868
BmtI	GCTAGC	1 cut(s)	1310
BoxI	GACNNNNGTC	1 cut(s)	1791
Bpu1102I	GCTNAGC	1 cut(s)	206
Bpu14I	TTCGAA	1 cut(s)	1917
BpuEI	CTTGAG	1 cut(s)	140
BpuMI	CCSGG	2 cut(s)	281, 1386
BsaAI	YACGTR	2 cut(s)	535, 1450
BsaHI	GRCGYC	1 cut(s)	261
BsaJI	CCNNGG	5 cut(s)	681, 732, 1003, 1209, 1384
BsaWI	WCCGGW	1 cut(s)	415
Bsc4I	CCNNNNNNNGG	2 cut(s)	663, 1693
Bse1I	ACTGG	3 cut(s)	211, 1761, 1795
Bse3DI	GCAATG	4 cut(s)	103, 894, 1389, 1772
BseBI	CCWGG	1 cut(s)	682
BseDI	CCNNGG	5 cut(s)	681, 732, 1003, 1209, 1384
BseGI	GGATG	7 cut(s)	151, 237, 350, 472, 988, 1182, 1720
BseLI	CCNNNNNNNGG	2 cut(s)	663, 1693
BseMI	GCAATG	4 cut(s)	103, 894, 1389, 1772
BseMII	CTCAG	4 cut(s)	220, 603, 915, 1302
BseNI	ACTGG	3 cut(s)	211, 1761, 1795
BseRI	GAGGAG	2 cut(s)	412, 710
BseSI	GKGCMC	1 cut(s)	410
BseXI	GCAGC	3 cut(s)	437, 1176, 1390
BseYI	CCCAGC	3 cut(s)	171, 899, 1554
BsgI	GTGCAG	1 cut(s)	1614
Bsh1236I	CGCG	3 cut(s)	300, 307, 1331
BshFI	GGCC	5 cut(s)	680, 731, 918, 1126, 1681
BsiHKAI	GWGCWC	2 cut(s)	126, 288
BsiHKCI	CYCGRG	2 cut(s)	833, 1301
BsiSI	CCGG	4 cut(s)	109, 281, 416, 1386
BsiWI	CGTACG	1 cut(s)	990
BslFI	GGGAC	3 cut(s)	248, 286, 1779
BslI	CCNNNNNNNGG	2 cut(s)	663, 1693
BsmAI	GTCTC	1 cut(s)	1307
BsmBI	CGTCTC	1 cut(s)	1307
BsmFI	GGGAC	3 cut(s)	248, 286, 1779
BsmI	GAATGC	1 cut(s)	798
BsnI	GGCC	5 cut(s)	680, 731, 918, 1126, 1681
BsoBI	CYCGRG	2 cut(s)	833, 1301
Bsp119I	TTCGAA	1 cut(s)	1917
Bsp1286I	GDGCHC	4 cut(s)	126, 207, 288, 410
Bsp143I	GATC	7 cut(s)	336, 507, 941, 1183, 1645, 1666, 1806
Bsp1720I	GCTNAGC	1 cut(s)	206
Bsp19I	CCATGG	2 cut(s)	732, 1209
BspANI	GGCC	5 cut(s)	680, 731, 918, 1126, 1681
BspCNI	CTCAG	4 cut(s)	219, 604, 916, 1303
BspFNI	CGCG	3 cut(s)	300, 307, 1331
BspHI	TCATGA	1 cut(s)	1096
BspLI	GGNNCC	3 cut(s)	274, 414, 1795
BspMAI	CTGCAG	1 cut(s)	1166
BspMI	ACCTGC	3 cut(s)	166, 475, 1586
BspOI	GCTAGC	1 cut(s)	1310
BspPI	GGATC	3 cut(s)	949, 1653, 1674
BspT104I	TTCGAA	1 cut(s)	1917
BsrDI	GCAATG	4 cut(s)	103, 894, 1389, 1772
BsrI	ACTGG	3 cut(s)	211, 1761, 1795
BssECI	CCNNGG	5 cut(s)	681, 732, 1003, 1209, 1384
BssMI	GATC	7 cut(s)	336, 507, 941, 1183, 1645, 1666, 1806
BssNI	GRCGYC	1 cut(s)	261
BssT1I	CCWWGG	2 cut(s)	732, 1209
Bst2UI	CCWGG	1 cut(s)	682
Bst4CI	ACNGT	3 cut(s)	139, 502, 1133
BstACI	GRCGYC	1 cut(s)	261
BstBAI	YACGTR	2 cut(s)	535, 1450
BstBI	TTCGAA	1 cut(s)	1917
BstC8I	GCNNGC	4 cut(s)	245, 492, 1162, 1308
BstDEI	CTNAG	4 cut(s)	206, 612, 924, 1311
BstDSI	CCRYGG	2 cut(s)	732, 1209
BstF5I	GGATG	7 cut(s)	151, 237, 350, 472, 988, 1182, 1720
BstFNI	CGCG	3 cut(s)	300, 307, 1331
BstH2I	RGCGCY	2 cut(s)	804, 1355
BstHHI	GCGC	8 cut(s)	309, 496, 751, 803, 856, 1333, 1354, 1859
BstKTI	GATC	7 cut(s)	339, 510, 944, 1186, 1648, 1669, 1809
BstMAI	GTCTC	1 cut(s)	1307
BstMBI	GATC	7 cut(s)	336, 507, 941, 1183, 1645, 1666, 1806
BstMWI	GCNNNNNNNGC	9 cut(s)	216, 253, 306, 456, 487, 653, 728, 1079, 1400
BstNI	CCWGG	1 cut(s)	682
BstNSI	RCATGY	1 cut(s)	494
BstPAI	GACNNNNGTC	1 cut(s)	1791
BstSCI	CCNGG	3 cut(s)	279, 680, 1384
BstSFI	CTRYAG	1 cut(s)	1162
BstSLI	GKGCMC	1 cut(s)	410
BstUI	CGCG	3 cut(s)	300, 307, 1331
BstV1I	GCAGC	3 cut(s)	437, 1176, 1390
BstX2I	RGATCY	2 cut(s)	941, 1645
BstYI	RGATCY	2 cut(s)	941, 1645
BsuI	GTATCC	1 cut(s)	1382
BsuRI	GGCC	5 cut(s)	680, 731, 918, 1126, 1681
BtgI	CCRYGG	2 cut(s)	732, 1209
BtgZI	GCGATG	1 cut(s)	178
BtrI	CACGTC	2 cut(s)	190, 1607
BtsCI	GGATG	7 cut(s)	151, 237, 350, 472, 988, 1182, 1720
BtsI	GCAGTG	2 cut(s)	381, 1065
BtsIMutI	CAGTG	3 cut(s)	381, 1065, 1788
BveI	ACCTGC	3 cut(s)	166, 475, 1586
Cac8I	GCNNGC	4 cut(s)	245, 492, 1162, 1308
CaiI	CAGNNNCTG	1 cut(s)	1790
CciI	TCATGA	1 cut(s)	1096
CfoI	GCGC	8 cut(s)	309, 496, 751, 803, 856, 1333, 1354, 1859
Cfr13I	GGNCC	6 cut(s)	178, 273, 413, 633, 917, 1793
CseI	GACGC	2 cut(s)	250, 313
Csp6I	GTAC	5 cut(s)	214, 532, 559, 961, 991
CviQI	GTAC	5 cut(s)	214, 532, 559, 961, 991
DdeI	CTNAG	4 cut(s)	206, 612, 924, 1311
DpnI	GATC	7 cut(s)	338, 509, 943, 1185, 1647, 1668, 1808
DpnII	GATC	7 cut(s)	336, 507, 941, 1183, 1645, 1666, 1806
DraI	TTTAAA	1 cut(s)	445
EaeI	YGGCCR	2 cut(s)	678, 729
EciI	GGCGGA	3 cut(s)	284, 539, 604
Ecl136II	GAGCTC	1 cut(s)	286
Eco130I	CCWWGG	2 cut(s)	732, 1209
Eco24I	GRGCYC	2 cut(s)	207, 288
Eco32I	GATATC	1 cut(s)	1627
Eco47I	GGWCC	5 cut(s)	178, 273, 413, 633, 1793
Eco47III	AGCGCT	1 cut(s)	1353
Eco53kI	GAGCTC	1 cut(s)	286
Eco88I	CYCGRG	2 cut(s)	833, 1301
EcoICRI	GAGCTC	1 cut(s)	286
EcoO109I	RGGNCCY	1 cut(s)	273
EcoRI	GAATTC	1 cut(s)	1690
EcoRII	CCWGG	1 cut(s)	680
EcoRV	GATATC	1 cut(s)	1627
EcoT14I	CCWWGG	2 cut(s)	732, 1209
EcoT22I	ATGCAT	1 cut(s)	1474
EcoT38I	GRGCYC	2 cut(s)	207, 288
ErhI	CCWWGG	2 cut(s)	732, 1209
Esp3I	CGTCTC	1 cut(s)	1307
FaqI	GGGAC	3 cut(s)	248, 286, 1779
FauI	CCCGC	4 cut(s)	23, 446, 789, 1165
FbaI	TGATCA	2 cut(s)	336, 1183
FblI	GTMKAC	1 cut(s)	1263
FokI	GGATG	7 cut(s)	158, 224, 357, 479, 995, 1189, 1727
FriOI	GRGCYC	2 cut(s)	207, 288
FspBI	CTAG	1 cut(s)	1307
FspI	TGCGCA	3 cut(s)	495, 750, 855
GlaI	GCGC	8 cut(s)	308, 495, 750, 802, 855, 1332, 1353, 1858
GsaI	CCCAGC	3 cut(s)	175, 903, 1558
HaeII	RGCGCY	2 cut(s)	804, 1355
HaeIII	GGCC	5 cut(s)	680, 731, 918, 1126, 1681
HapII	CCGG	4 cut(s)	109, 281, 416, 1386
HgaI	GACGC	2 cut(s)	250, 313
HhaI	GCGC	8 cut(s)	309, 496, 751, 803, 856, 1333, 1354, 1859
Hin1I	GRCGYC	1 cut(s)	261
Hin6I	GCGC	8 cut(s)	307, 494, 749, 801, 854, 1331, 1352, 1857
HinP1I	GCGC	8 cut(s)	307, 494, 749, 801, 854, 1331, 1352, 1857
HindIII	AAGCTT	1 cut(s)	44
HinfI	GANTC	5 cut(s)	21, 97, 129, 905, 1905
HpaII	CCGG	4 cut(s)	109, 281, 416, 1386
HphI	GGTGA	9 cut(s)	127, 154, 220, 241, 418, 898, 1502, 1601, 1610
Hpy166II	GTNNAC	5 cut(s)	181, 426, 633, 726, 1264
Hpy188I	TCNGA	6 cut(s)	74, 341, 370, 1004, 1442, 1533
Hpy188III	TCNNGA	4 cut(s)	143, 1097, 1301, 1813
Hpy8I	GTNNAC	5 cut(s)	181, 426, 633, 726, 1264
Hpy99I	CGWCG	1 cut(s)	439
HpyAV	CCTTC	6 cut(s)	350, 439, 586, 1476, 1519, 1869
HpyCH4III	ACNGT	3 cut(s)	139, 502, 1133
HpyCH4IV	ACGT	5 cut(s)	189, 222, 534, 1449, 1606
HpyF10VI	GCNNNNNNNGC	9 cut(s)	216, 253, 306, 456, 487, 653, 728, 1079, 1400
HpyF3I	CTNAG	4 cut(s)	206, 612, 924, 1311
HpySE526I	ACGT	5 cut(s)	189, 222, 534, 1449, 1606
Hsp92I	GRCGYC	1 cut(s)	261
HspAI	GCGC	8 cut(s)	307, 494, 749, 801, 854, 1331, 1352, 1857
Ksp22I	TGATCA	2 cut(s)	336, 1183
Kzo9I	GATC	7 cut(s)	336, 507, 941, 1183, 1645, 1666, 1806
LmnI	GCTCC	4 cut(s)	283, 456, 975, 1349
Lsp1109I	GCAGC	3 cut(s)	437, 1176, 1390
LweI	GCATC	8 cut(s)	750, 976, 1092, 1308, 1443, 1481, 1716, 1868
MaeI	CTAG	1 cut(s)	1307
MaeII	ACGT	5 cut(s)	189, 222, 534, 1449, 1606
MaeIII	GTNAC	7 cut(s)	301, 736, 823, 1135, 1228, 1607, 1867
MalI	GATC	7 cut(s)	338, 509, 943, 1185, 1647, 1668, 1808
MboI	GATC	7 cut(s)	336, 507, 941, 1183, 1645, 1666, 1806
MboII	GAAGA	6 cut(s)	106, 1304, 1634, 1640, 1730, 1844
MflI	RGATCY	2 cut(s)	941, 1645
MhlI	GDGCHC	4 cut(s)	126, 207, 288, 410
MluCI	AATT	7 cut(s)	754, 880, 1398, 1690, 1824, 1933, 1942
MmeI	TCCRAC	2 cut(s)	756, 1485
Mph1103I	ATGCAT	1 cut(s)	1474
MseI	TTAA	2 cut(s)	444, 1803
MslI	CAYNNNNRTG	3 cut(s)	1068, 1256, 1338
MspA1I	CMGCKG	1 cut(s)	1241
MspI	CCGG	4 cut(s)	109, 281, 416, 1386
MspR9I	CCNGG	3 cut(s)	281, 682, 1386
Mva1269I	GAATGC	1 cut(s)	798
MvaI	CCWGG	1 cut(s)	682
MvnI	CGCG	3 cut(s)	300, 307, 1331
MwoI	GCNNNNNNNGC	9 cut(s)	216, 253, 306, 456, 487, 653, 728, 1079, 1400
NciI	CCSGG	2 cut(s)	281, 1386
NcoI	CCATGG	2 cut(s)	732, 1209
NdeII	GATC	7 cut(s)	336, 507, 941, 1183, 1645, 1666, 1806
NheI	GCTAGC	1 cut(s)	1306
NlaIV	GGNNCC	3 cut(s)	274, 414, 1795
NmeAIII	GCCGAG	2 cut(s)	237, 789
NmuCI	GTSAC	3 cut(s)	301, 1228, 1607
NsbI	TGCGCA	3 cut(s)	495, 750, 855
NsiI	ATGCAT	1 cut(s)	1474
NspI	RCATGY	1 cut(s)	494
NspV	TTCGAA	1 cut(s)	1917
PaeI	GCATGC	1 cut(s)	494
PaeR7I	CTCGAG	1 cut(s)	1301
PagI	TCATGA	1 cut(s)	1096
PaqCI	CACCTGC	2 cut(s)	475, 1586
PcsI	WCGNNNNNNNCGW	1 cut(s)	1446
PctI	GAATGC	1 cut(s)	798
PfeI	GAWTC	5 cut(s)	21, 97, 129, 905, 1905
Pfl23II	CGTACG	1 cut(s)	990
Ppu21I	YACGTR	2 cut(s)	535, 1450
PpuMI	RGGWCCY	1 cut(s)	273
PshAI	GACNNNNGTC	1 cut(s)	1791
PsiI	TTATAA	1 cut(s)	1121
Psp124BI	GAGCTC	1 cut(s)	288
Psp5II	RGGWCCY	1 cut(s)	273
Psp6I	CCWGG	1 cut(s)	680
PspFI	CCCAGC	3 cut(s)	171, 899, 1554
PspGI	CCWGG	1 cut(s)	680
PspLI	CGTACG	1 cut(s)	990
PspN4I	GGNNCC	3 cut(s)	274, 414, 1795
PspPI	GGNCC	6 cut(s)	178, 273, 413, 633, 917, 1793
PspPPI	RGGWCCY	1 cut(s)	273
PstI	CTGCAG	1 cut(s)	1166
PstNI	CAGNNNCTG	1 cut(s)	1790
PsuI	RGATCY	2 cut(s)	941, 1645
PvuII	CAGCTG	1 cut(s)	1241
RsaI	GTAC	5 cut(s)	215, 533, 560, 962, 992
RsaNI	GTAC	5 cut(s)	214, 532, 559, 961, 991
RseI	CAYNNNNRTG	3 cut(s)	1068, 1256, 1338
SacI	GAGCTC	1 cut(s)	288
SaqAI	TTAA	2 cut(s)	444, 1803
Sau3AI	GATC	7 cut(s)	336, 507, 941, 1183, 1645, 1666, 1806
Sau96I	GGNCC	6 cut(s)	178, 273, 413, 633, 917, 1793
ScrFI	CCNGG	3 cut(s)	281, 682, 1386
SduI	GDGCHC	4 cut(s)	126, 207, 288, 410
SfaNI	GCATC	8 cut(s)	750, 976, 1092, 1308, 1443, 1481, 1716, 1868
SfcI	CTRYAG	1 cut(s)	1162
Sfr274I	CTCGAG	1 cut(s)	1301
SfuI	TTCGAA	1 cut(s)	1917
SinI	GGWCC	5 cut(s)	178, 273, 413, 633, 1793
SlaI	CTCGAG	1 cut(s)	1301
SmiMI	CAYNNNNRTG	3 cut(s)	1068, 1256, 1338
SmlI	CTYRAG	2 cut(s)	119, 1301
SmoI	CTYRAG	2 cut(s)	119, 1301
SphI	GCATGC	1 cut(s)	494
Sse9I	AATT	7 cut(s)	754, 880, 1398, 1690, 1824, 1933, 1942
SspMI	CTAG	1 cut(s)	1307
SstI	GAGCTC	1 cut(s)	288
StyD4I	CCNGG	3 cut(s)	279, 680, 1384
StyI	CCWWGG	2 cut(s)	732, 1209
TaaI	ACNGT	3 cut(s)	139, 502, 1133
TaiI	ACGT	5 cut(s)	192, 225, 537, 1452, 1609
TaqI	TCGA	6 cut(s)	92, 1086, 1276, 1302, 1581, 1917
TaqII	GACCGA	1 cut(s)	650
TasI	AATT	7 cut(s)	754, 880, 1398, 1690, 1824, 1933, 1942
TatI	WGTACW	2 cut(s)	213, 558
TauI	GCSGC	7 cut(s)	64, 300, 332, 484, 524, 1082, 1941
TfiI	GAWTC	5 cut(s)	21, 97, 129, 905, 1905
Tru1I	TTAA	2 cut(s)	444, 1803
Tru9I	TTAA	2 cut(s)	444, 1803
TscAI	CASTG	3 cut(s)	381, 1065, 1795
TseFI	GTSAC	3 cut(s)	301, 1228, 1607
TseI	GCWGC	3 cut(s)	450, 1164, 1403
Tsp45I	GTSAC	3 cut(s)	301, 1228, 1607
TspDTI	ATGAA	5 cut(s)	618, 1025, 1085, 1731, 1837
TspRI	CASTG	3 cut(s)	381, 1065, 1795
VpaK11BI	GGWCC	5 cut(s)	178, 273, 413, 633, 1793
XapI	RAATTY	3 cut(s)	754, 1690, 1824
XceI	RCATGY	1 cut(s)	494
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1919
XhoI	CTCGAG	1 cut(s)	1301
XmiI	GTMKAC	1 cut(s)	1263
XspI	CTAG	1 cut(s)	1307
Zsp2I	ATGCAT	1 cut(s)	1474

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.