Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G44230 AT5G44230 |
| fragaria_vesca | FvH4_1g12540 |
| malus_domestica | MD15G1252800.v1.1 |
| prunus_persica | Prupe.7G161300_v2.0.a1 |
| pyrus_communis | pycom15g22270 |
| rosa_chinensis | RchiOBHm_Chr2g0100491 |
| rosa_laevigata | RLG00000016976 |
| rosa_multiflora | Rmu_sc0000528.1_g000023 Rmu_sc0020397.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00142190 |
| rosa_rugosa | Rorug02G0088600 |
| rosa_samantha | Rh2AG138300 Rh2BG141300 Rh2CG143500 Rh2DG143100 |
| rosa_wichuraiana | Rw2G010810 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 25 |
| Acc16I | TGCGCA | 1 cut(s) | 231 |
| Acc36I | ACCTGC | 1 cut(s) | 25 |
| AccII | CGCG | 1 cut(s) | 905 |
| AciI | CCGC | 6 cut(s) | 65, 110, 260, 321, 905, 1263 |
| AclWI | GGATC | 3 cut(s) | 685, 978, 999 |
| AcsI | RAATTY | 3 cut(s) | 208, 490, 1015 |
| AfaI | GTAC | 2 cut(s) | 269, 1183 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 399, 708, 1018 |
| AgsI | TTSAA | 4 cut(s) | 92, 181, 301, 445 |
| AjnI | CCWGG | 1 cut(s) | 605 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 494, 526, 633, 665, 1000, 1032 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 12, 44 |
| AluBI | AGCT | 2 cut(s) | 714, 774 |
| AluI | AGCT | 2 cut(s) | 714, 774 |
| Alw21I | GWGCWC | 1 cut(s) | 592 |
| Alw26I | GTCTC | 1 cut(s) | 621 |
| Alw44I | GTGCAC | 1 cut(s) | 588 |
| AlwI | GGATC | 3 cut(s) | 685, 978, 999 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1115 |
| Ama87I | CYCGRG | 1 cut(s) | 569 |
| AoxI | GGCC | 5 cut(s) | 149, 183, 214, 857, 1004 |
| ApaLI | GTGCAC | 1 cut(s) | 588 |
| ApeKI | GCWGC | 2 cut(s) | 815, 897 |
| ApoI | RAATTY | 3 cut(s) | 208, 490, 1015 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 100 |
| AspLEI | GCGC | 3 cut(s) | 175, 232, 327 |
| AspS9I | GGNCC | 4 cut(s) | 149, 214, 369, 622 |
| AsuC2I | CCSGG | 2 cut(s) | 17, 866 |
| AsuHPI | GGTGA | 3 cut(s) | 124, 926, 935 |
| AsuII | TTCGAA | 1 cut(s) | 1242 |
| AvaI | CYCGRG | 1 cut(s) | 569 |
| AvaII | GGWCC | 2 cut(s) | 369, 622 |
| BaeGI | GKGCMC | 2 cut(s) | 146, 592 |
| BanII | GRGCYC | 1 cut(s) | 552 |
| BbsI | GAAGAC | 2 cut(s) | 19, 1164 |
| Bbv12I | GWGCWC | 1 cut(s) | 592 |
| BbvCI | CCTCAGC | 1 cut(s) | 636 |
| BbvI | GCAGC | 2 cut(s) | 827, 909 |
| BccI | CCATC | 2 cut(s) | 904, 1057 |
| BceAI | ACGGC | 1 cut(s) | 480 |
| BciT130I | CCWGG | 1 cut(s) | 607 |
| BclI | TGATCA | 1 cut(s) | 916 |
| BcnI | CCSGG | 2 cut(s) | 17, 866 |
| BcoDI | GTCTC | 1 cut(s) | 621 |
| BfmI | CTRYAG | 2 cut(s) | 895, 1000 |
| BfoI | RGCGCY | 1 cut(s) | 176 |
| BfuAI | ACCTGC | 1 cut(s) | 25 |
| BisI | GCNGC | 4 cut(s) | 66, 816, 898, 1264 |
| BlsI | GCNGC | 4 cut(s) | 67, 817, 899, 1265 |
| Bme1390I | CCNGG | 3 cut(s) | 17, 607, 866 |
| Bme18I | GGWCC | 2 cut(s) | 369, 622 |
| BmeT110I | CYCGRG | 1 cut(s) | 569 |
| BmgT120I | GGNCC | 4 cut(s) | 149, 214, 369, 622 |
| BmiI | GGNNCC | 2 cut(s) | 623, 1120 |
| BmrFI | CCNGG | 3 cut(s) | 17, 607, 866 |
| BmrI | ACTGGG | 1 cut(s) | 156 |
| BmsI | GCATC | 4 cut(s) | 486, 712, 828, 1041 |
| BmuI | ACTGGG | 1 cut(s) | 156 |
| BpiI | GAAGAC | 2 cut(s) | 19, 1164 |
| Bpu10I | CCTNAGC | 1 cut(s) | 636 |
| Bpu14I | TTCGAA | 1 cut(s) | 1242 |
| BpuMI | CCSGG | 2 cut(s) | 17, 866 |
| BsaAI | YACGTR | 1 cut(s) | 271 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 399, 708, 1018 |
| Bse118I | RCCGGY | 2 cut(s) | 151, 216 |
| Bse1I | ACTGG | 3 cut(s) | 151, 481, 1086 |
| Bse3DI | GCAATG | 3 cut(s) | 563, 630, 1097 |
| BseBI | CCWGG | 1 cut(s) | 607 |
| BseGI | GGATG | 5 cut(s) | 208, 361, 724, 750, 915 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 399, 708, 1018 |
| BseMI | GCAATG | 3 cut(s) | 563, 630, 1097 |
| BseMII | CTCAG | 3 cut(s) | 339, 627, 674 |
| BseNI | ACTGG | 3 cut(s) | 151, 481, 1086 |
| BseRI | GAGGAG | 1 cut(s) | 148 |
| BseSI | GKGCMC | 2 cut(s) | 146, 592 |
| BseXI | GCAGC | 2 cut(s) | 827, 909 |
| Bsh1236I | CGCG | 1 cut(s) | 905 |
| BshFI | GGCC | 5 cut(s) | 151, 185, 216, 859, 1006 |
| BsiHKAI | GWGCWC | 1 cut(s) | 592 |
| BsiHKCI | CYCGRG | 1 cut(s) | 569 |
| BsiSI | CCGG | 5 cut(s) | 17, 31, 152, 217, 865 |
| BslFI | GGGAC | 1 cut(s) | 434 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 399, 708, 1018 |
| BsmAI | GTCTC | 1 cut(s) | 621 |
| BsmFI | GGGAC | 1 cut(s) | 434 |
| BsmI | GAATGC | 1 cut(s) | 534 |
| BsnI | GGCC | 5 cut(s) | 151, 185, 216, 859, 1006 |
| BsoBI | CYCGRG | 1 cut(s) | 569 |
| Bsp119I | TTCGAA | 1 cut(s) | 1242 |
| Bsp1286I | GDGCHC | 3 cut(s) | 146, 552, 592 |
| Bsp143I | GATC | 6 cut(s) | 243, 677, 916, 970, 991, 1131 |
| BspACI | CCGC | 6 cut(s) | 65, 110, 260, 321, 905, 1263 |
| BspANI | GGCC | 5 cut(s) | 151, 185, 216, 859, 1006 |
| BspCNI | CTCAG | 3 cut(s) | 340, 628, 673 |
| BspFNI | CGCG | 1 cut(s) | 905 |
| BspHI | TCATGA | 1 cut(s) | 832 |
| BspLI | GGNNCC | 2 cut(s) | 623, 1120 |
| BspMAI | CTGCAG | 1 cut(s) | 899 |
| BspMI | ACCTGC | 1 cut(s) | 25 |
| BspPI | GGATC | 3 cut(s) | 685, 978, 999 |
| BspT104I | TTCGAA | 1 cut(s) | 1242 |
| BsrDI | GCAATG | 3 cut(s) | 563, 630, 1097 |
| BsrFI | RCCGGY | 2 cut(s) | 151, 216 |
| BsrI | ACTGG | 3 cut(s) | 151, 481, 1086 |
| BssAI | RCCGGY | 2 cut(s) | 151, 216 |
| BssMI | GATC | 6 cut(s) | 243, 677, 916, 970, 991, 1131 |
| Bst2UI | CCWGG | 1 cut(s) | 607 |
| Bst4CI | ACNGT | 2 cut(s) | 238, 1163 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 40 |
| BstBAI | YACGTR | 1 cut(s) | 271 |
| BstBI | TTCGAA | 1 cut(s) | 1242 |
| BstC8I | GCNNGC | 3 cut(s) | 218, 323, 895 |
| BstDEI | CTNAG | 3 cut(s) | 348, 636, 660 |
| BstF5I | GGATG | 5 cut(s) | 208, 361, 724, 750, 915 |
| BstFNI | CGCG | 1 cut(s) | 905 |
| BstH2I | RGCGCY | 1 cut(s) | 176 |
| BstHHI | GCGC | 3 cut(s) | 175, 232, 327 |
| BstKTI | GATC | 6 cut(s) | 246, 680, 919, 973, 994, 1134 |
| BstMAI | GTCTC | 1 cut(s) | 621 |
| BstMBI | GATC | 6 cut(s) | 243, 677, 916, 970, 991, 1131 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 40, 815 |
| BstNI | CCWGG | 1 cut(s) | 607 |
| BstNSI | RCATGY | 1 cut(s) | 230 |
| BstSCI | CCNGG | 3 cut(s) | 15, 605, 864 |
| BstSFI | CTRYAG | 2 cut(s) | 895, 1000 |
| BstSLI | GKGCMC | 2 cut(s) | 146, 592 |
| BstUI | CGCG | 1 cut(s) | 905 |
| BstV1I | GCAGC | 2 cut(s) | 827, 909 |
| BstV2I | GAAGAC | 2 cut(s) | 19, 1164 |
| BstX2I | RGATCY | 2 cut(s) | 677, 970 |
| BstYI | RGATCY | 2 cut(s) | 677, 970 |
| BsuRI | GGCC | 5 cut(s) | 151, 185, 216, 859, 1006 |
| BtsCI | GGATG | 5 cut(s) | 208, 361, 724, 750, 915 |
| BtsI | GCAGTG | 1 cut(s) | 801 |
| BtsIMutI | CAGTG | 3 cut(s) | 144, 801, 846 |
| BveI | ACCTGC | 1 cut(s) | 25 |
| Cac8I | GCNNGC | 3 cut(s) | 218, 323, 895 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1115 |
| CciI | TCATGA | 1 cut(s) | 832 |
| CfoI | GCGC | 3 cut(s) | 175, 232, 327 |
| Cfr10I | RCCGGY | 2 cut(s) | 151, 216 |
| Cfr13I | GGNCC | 4 cut(s) | 149, 214, 369, 622 |
| Csp6I | GTAC | 2 cut(s) | 268, 1182 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 169, 204 |
| CviAII | CATG | 7 cut(s) | 227, 800, 833, 1040, 1166, 1174, 1225 |
| CviQI | GTAC | 2 cut(s) | 268, 1182 |
| DdeI | CTNAG | 3 cut(s) | 348, 636, 660 |
| DpnI | GATC | 6 cut(s) | 245, 679, 918, 972, 993, 1133 |
| DpnII | GATC | 6 cut(s) | 243, 677, 916, 970, 991, 1131 |
| EciI | GGCGGA | 1 cut(s) | 275 |
| Eco147I | AGGCCT | 1 cut(s) | 185 |
| Eco24I | GRGCYC | 1 cut(s) | 552 |
| Eco47I | GGWCC | 2 cut(s) | 369, 622 |
| Eco88I | CYCGRG | 1 cut(s) | 569 |
| EcoRI | GAATTC | 1 cut(s) | 490 |
| EcoRII | CCWGG | 1 cut(s) | 605 |
| EcoT22I | ATGCAT | 1 cut(s) | 727 |
| EcoT38I | GRGCYC | 1 cut(s) | 552 |
| FaeI | CATG | 7 cut(s) | 230, 803, 836, 1043, 1169, 1177, 1228 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 84, 116 |
| FaqI | GGGAC | 1 cut(s) | 434 |
| FatI | CATG | 7 cut(s) | 226, 799, 832, 1039, 1165, 1173, 1224 |
| FauI | CCCGC | 2 cut(s) | 314, 898 |
| FbaI | TGATCA | 1 cut(s) | 916 |
| Fnu4HI | GCNGC | 4 cut(s) | 66, 816, 898, 1264 |
| FokI | GGATG | 5 cut(s) | 215, 368, 731, 757, 922 |
| FriOI | GRGCYC | 1 cut(s) | 552 |
| Fsp4HI | GCNGC | 4 cut(s) | 66, 816, 898, 1264 |
| FspI | TGCGCA | 1 cut(s) | 231 |
| GlaI | GCGC | 3 cut(s) | 174, 231, 326 |
| GluI | GCNGC | 4 cut(s) | 66, 816, 898, 1264 |
| HaeII | RGCGCY | 1 cut(s) | 176 |
| HaeIII | GGCC | 5 cut(s) | 151, 185, 216, 859, 1006 |
| HapII | CCGG | 5 cut(s) | 17, 31, 152, 217, 865 |
| HhaI | GCGC | 3 cut(s) | 175, 232, 327 |
| Hin1II | CATG | 7 cut(s) | 230, 803, 836, 1043, 1169, 1177, 1228 |
| Hin6I | GCGC | 3 cut(s) | 173, 230, 325 |
| HinP1I | GCGC | 3 cut(s) | 173, 230, 325 |
| HinfI | GANTC | 5 cut(s) | 410, 641, 931, 1112, 1230 |
| HpaII | CCGG | 5 cut(s) | 17, 31, 152, 217, 865 |
| HphI | GGTGA | 3 cut(s) | 124, 926, 935 |
| Hpy166II | GTNNAC | 4 cut(s) | 162, 369, 462, 590 |
| Hpy188I | TCNGA | 5 cut(s) | 106, 285, 626, 663, 1217 |
| Hpy188III | TCNNGA | 2 cut(s) | 200, 833 |
| Hpy8I | GTNNAC | 4 cut(s) | 162, 369, 462, 590 |
| HpyAV | CCTTC | 4 cut(s) | 86, 952, 1180, 1194 |
| HpyCH4III | ACNGT | 2 cut(s) | 238, 1163 |
| HpyCH4IV | ACGT | 2 cut(s) | 164, 270 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 40, 815 |
| HpyF3I | CTNAG | 3 cut(s) | 348, 636, 660 |
| HpySE526I | ACGT | 2 cut(s) | 164, 270 |
| Hsp92II | CATG | 7 cut(s) | 230, 803, 836, 1043, 1169, 1177, 1228 |
| HspAI | GCGC | 3 cut(s) | 173, 230, 325 |
| KroI | GCCGGC | 1 cut(s) | 216 |
| KroNI | GCCGGC | 1 cut(s) | 218 |
| Ksp22I | TGATCA | 1 cut(s) | 916 |
| Kzo9I | GATC | 6 cut(s) | 243, 677, 916, 970, 991, 1131 |
| LmnI | GCTCC | 1 cut(s) | 711 |
| Lsp1109I | GCAGC | 2 cut(s) | 827, 909 |
| LweI | GCATC | 4 cut(s) | 486, 712, 828, 1041 |
| MaeII | ACGT | 2 cut(s) | 164, 270 |
| MaeIII | GTNAC | 5 cut(s) | 472, 559, 868, 932, 1192 |
| MalI | GATC | 6 cut(s) | 245, 679, 918, 972, 993, 1133 |
| MboI | GATC | 6 cut(s) | 243, 677, 916, 970, 991, 1131 |
| MboII | GAAGA | 4 cut(s) | 19, 965, 1055, 1169 |
| MfeI | CAATTG | 2 cut(s) | 87, 593 |
| MflI | RGATCY | 2 cut(s) | 677, 970 |
| MhlI | GDGCHC | 3 cut(s) | 146, 552, 592 |
| MluCI | AATT | 7 cut(s) | 87, 208, 490, 593, 616, 1015, 1258 |
| MlyI | GAGTC | 2 cut(s) | 419, 940 |
| MmeI | TCCRAC | 2 cut(s) | 492, 945 |
| Mph1103I | ATGCAT | 1 cut(s) | 727 |
| MroNI | GCCGGC | 1 cut(s) | 216 |
| MroXI | GAANNNNTTC | 1 cut(s) | 100 |
| MseI | TTAA | 2 cut(s) | 954, 1128 |
| MslI | CAYNNNNRTG | 2 cut(s) | 128, 804 |
| MspI | CCGG | 5 cut(s) | 17, 31, 152, 217, 865 |
| MspR9I | CCNGG | 3 cut(s) | 17, 607, 866 |
| MunI | CAATTG | 2 cut(s) | 87, 593 |
| Mva1269I | GAATGC | 1 cut(s) | 534 |
| MvaI | CCWGG | 1 cut(s) | 607 |
| MvnI | CGCG | 1 cut(s) | 905 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 40, 815 |
| NaeI | GCCGGC | 1 cut(s) | 218 |
| NciI | CCSGG | 2 cut(s) | 17, 866 |
| NdeII | GATC | 6 cut(s) | 243, 677, 916, 970, 991, 1131 |
| NgoMIV | GCCGGC | 1 cut(s) | 216 |
| NlaIII | CATG | 7 cut(s) | 230, 803, 836, 1043, 1169, 1177, 1228 |
| NlaIV | GGNNCC | 2 cut(s) | 623, 1120 |
| NmeAIII | GCCGAG | 1 cut(s) | 149 |
| NmuCI | GTSAC | 1 cut(s) | 932 |
| NsbI | TGCGCA | 1 cut(s) | 231 |
| NsiI | ATGCAT | 1 cut(s) | 727 |
| NspI | RCATGY | 1 cut(s) | 230 |
| NspV | TTCGAA | 1 cut(s) | 1242 |
| PagI | TCATGA | 1 cut(s) | 832 |
| PaqCI | CACCTGC | 1 cut(s) | 25 |
| PceI | AGGCCT | 1 cut(s) | 185 |
| PctI | GAATGC | 1 cut(s) | 534 |
| PdiI | GCCGGC | 1 cut(s) | 218 |
| PdmI | GAANNNNTTC | 1 cut(s) | 100 |
| PfeI | GAWTC | 3 cut(s) | 641, 1112, 1230 |
| PkrI | GCNGC | 4 cut(s) | 67, 817, 899, 1265 |
| PleI | GAGTC | 2 cut(s) | 418, 939 |
| PpsI | GAGTC | 2 cut(s) | 418, 939 |
| Ppu21I | YACGTR | 1 cut(s) | 271 |
| Psp6I | CCWGG | 1 cut(s) | 605 |
| PspGI | CCWGG | 1 cut(s) | 605 |
| PspN4I | GGNNCC | 2 cut(s) | 623, 1120 |
| PspPI | GGNCC | 4 cut(s) | 149, 214, 369, 622 |
| PstI | CTGCAG | 1 cut(s) | 899 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1115 |
| PsuI | RGATCY | 2 cut(s) | 677, 970 |
| RsaI | GTAC | 2 cut(s) | 269, 1183 |
| RsaNI | GTAC | 2 cut(s) | 268, 1182 |
| RseI | CAYNNNNRTG | 2 cut(s) | 128, 804 |
| SaqAI | TTAA | 2 cut(s) | 954, 1128 |
| SatI | GCNGC | 4 cut(s) | 66, 816, 898, 1264 |
| Sau3AI | GATC | 6 cut(s) | 243, 677, 916, 970, 991, 1131 |
| Sau96I | GGNCC | 4 cut(s) | 149, 214, 369, 622 |
| SchI | GAGTC | 2 cut(s) | 419, 940 |
| ScrFI | CCNGG | 3 cut(s) | 17, 607, 866 |
| SduI | GDGCHC | 3 cut(s) | 146, 552, 592 |
| SfaNI | GCATC | 4 cut(s) | 486, 712, 828, 1041 |
| SfcI | CTRYAG | 2 cut(s) | 895, 1000 |
| SfuI | TTCGAA | 1 cut(s) | 1242 |
| SinI | GGWCC | 2 cut(s) | 369, 622 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 128, 804 |
| Sse9I | AATT | 7 cut(s) | 87, 208, 490, 593, 616, 1015, 1258 |
| SseBI | AGGCCT | 1 cut(s) | 185 |
| SsiI | CCGC | 6 cut(s) | 65, 110, 260, 321, 905, 1263 |
| SspI | AATATT | 1 cut(s) | 733 |
| StuI | AGGCCT | 1 cut(s) | 185 |
| StyD4I | CCNGG | 3 cut(s) | 15, 605, 864 |
| TaaI | ACNGT | 2 cut(s) | 238, 1163 |
| TaiI | ACGT | 2 cut(s) | 167, 273 |
| TaqI | TCGA | 3 cut(s) | 494, 552, 1242 |
| TaqII | GACCGA | 1 cut(s) | 386 |
| TasI | AATT | 7 cut(s) | 87, 208, 490, 593, 616, 1015, 1258 |
| TauI | GCSGC | 2 cut(s) | 68, 1266 |
| TfiI | GAWTC | 3 cut(s) | 641, 1112, 1230 |
| Tru1I | TTAA | 2 cut(s) | 954, 1128 |
| Tru9I | TTAA | 2 cut(s) | 954, 1128 |
| TscAI | CASTG | 3 cut(s) | 151, 801, 853 |
| TseFI | GTSAC | 1 cut(s) | 932 |
| TseI | GCWGC | 2 cut(s) | 815, 897 |
| Tsp45I | GTSAC | 1 cut(s) | 932 |
| TspDTI | ATGAA | 5 cut(s) | 354, 761, 821, 1056, 1162 |
| TspRI | CASTG | 3 cut(s) | 151, 801, 853 |
| VneI | GTGCAC | 1 cut(s) | 588 |
| VpaK11BI | GGWCC | 2 cut(s) | 369, 622 |
| XapI | RAATTY | 3 cut(s) | 208, 490, 1015 |
| XceI | RCATGY | 1 cut(s) | 230 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1244 |
| XmnI | GAANNNNTTC | 1 cut(s) | 100 |
| Zsp2I | ATGCAT | 1 cut(s) | 727 |