Rh2BG141300

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
Physical Location & Seq
Forward (+)
12127588 .. 12129270
1683 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG141300.1

Sequence Viewer

Length: 1278 bp
ATGCCCACCACCTACCCGGAACTCGTCTTCCGGCAGGTGTTGCACCCGAACCCGTTTCTCTGGGCGGCTATGATTAGAGGGTGTGCAATTGAAGGAACTCTTTCGGAAGCGGTGAAGTATTACACTTTGATGAGGAGGGAGGGCACTGGGCCGGTTTCGTTTACGTTCTCGGCGCTGTTCAAGGCCTGTGGGAGTGGTCTGGATGTGAATTTGGGCCGGCAGATACATGCGCAGACGGTTTTGATCGGTGGGTTTGTGGCGGATTTGTACGTGGGGAACACTCTGATTGATATGTATTTGAAGTGTGGGTTTTTGGATTGCGGGCGCAAGGTGTTTGATGAAATGCCTGAGAGGGATGTGGTTTCGTGGACCGAGTTGATTGTGGCGTATGCCAAGAGTGGGGATATGGAGTCGGCGAGGGACTTGTTTGAGGATTTGAGTTTGAAAGATATGGTGGTGTGGACGGCTATGGTTACTGGTTATGCCCAGAATTCGATGCCGAAAGAGGCGTTGGATTGCTTTGAGAGAATGCGAGGTGCTGGTGTAGGGCTCGATGAGGTTACATTGCTCGGGGTCATTTCGGCTTGTGCACAATTGGGTGCTTCCAGGTATGCTAATTGGGTCCGAGACATTGCTGAGGAATCTGGTTTTGGGGCAACTCAGAATGTGCTTGTGGGATCTGCATTGATAGATATGTTCTCCAAGTGTGGGAGCTTGGATGATGCATACAATATTTTTCAGGGGATGAAGCAAAGGAATGTGTTTTCTTATAGCTCAATGATTTGGGGATTTGCAGTGCATGGAAATGCCAATGCAGCGATAGGATTGTTTCATGAGATGCTGACCACTGATGTAAGGCCGAACCGGGTTACTTTTATAGGTGTGCTAACTGCCTGCAGCCACGCGGGGATGGTTGATCAAGGTGAAACGAGTCACCCCAAATACAACAAGATTAAGAAGGCGTTGGAGGATCTTCTAAACAGATTGCAGGATCGTGGCTATAGGCCAAACCTAAATTCGGTGGATTATGATGTGGGGCATGAAGAAAAGATGCGTATATTGATGGCTCATAGCGAAAAACTGGCTTTGGCATACGCATTGCTCTACGCAGATTCTGGTTCCACCATTAAGATCGCCAAGAACATAAGGATTTGTGAAGACTGTCATGCCTTCATGTGTGGTACATCACGGGTTACAGGAAGGCATATTATTGTCAGAGATAACATGAGATTCCACCACTTCGAAAATGGGAGTTGTAATTGCGGCAACTTTTGGTGA

Protein Analysis

425

Amino Acids

47.21

Weight (kDa)

6.07

Isoelectric Point (pI)

30.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 150 - 197 5.5e-07 PPR repeat family
PPR PF01535 152 - 182 2e-07 PPR repeat
PPR_2 PF13041 252 - 300 1.6e-08 PPR repeat family
DYW_deaminase PF14432 333 - 425 5.5e-40 DYW family of nucleic acid deaminases
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014443)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G44230 AT5G44230
fragaria_vesca FvH4_1g12540
malus_domestica MD15G1252800.v1.1
prunus_persica Prupe.7G161300_v2.0.a1
pyrus_communis pycom15g22270
rosa_chinensis RchiOBHm_Chr2g0100491
rosa_laevigata RLG00000016976
rosa_multiflora Rmu_sc0000528.1_g000023 Rmu_sc0020397.1_g000001
rosa_roxburghii Rroxscaffold_2G00142190
rosa_rugosa Rorug02G0088600
rosa_samantha Rh2AG138300 Rh2BG141300 Rh2CG143500 Rh2DG143100
rosa_wichuraiana Rw2G010810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 25
Acc16I TGCGCA 1 cut(s) 231
Acc36I ACCTGC 1 cut(s) 25
AccII CGCG 1 cut(s) 905
AciI CCGC 6 cut(s) 65, 110, 260, 321, 905, 1263
AclWI GGATC 3 cut(s) 685, 978, 999
AcsI RAATTY 3 cut(s) 208, 490, 1015
AfaI GTAC 2 cut(s) 269, 1183
AfiI CCNNNNNNNGG 3 cut(s) 399, 708, 1018
AgsI TTSAA 4 cut(s) 92, 181, 301, 445
AjnI CCWGG 1 cut(s) 605
AjuI GAANNNNNNNTTGG 6 cut(s) 494, 526, 633, 665, 1000, 1032
AloI GAACNNNNNNTCC 2 cut(s) 12, 44
AluBI AGCT 2 cut(s) 714, 774
AluI AGCT 2 cut(s) 714, 774
Alw21I GWGCWC 1 cut(s) 592
Alw26I GTCTC 1 cut(s) 621
Alw44I GTGCAC 1 cut(s) 588
AlwI GGATC 3 cut(s) 685, 978, 999
AlwNI CAGNNNCTG 1 cut(s) 1115
Ama87I CYCGRG 1 cut(s) 569
AoxI GGCC 5 cut(s) 149, 183, 214, 857, 1004
ApaLI GTGCAC 1 cut(s) 588
ApeKI GCWGC 2 cut(s) 815, 897
ApoI RAATTY 3 cut(s) 208, 490, 1015
Asp700I GAANNNNTTC 1 cut(s) 100
AspLEI GCGC 3 cut(s) 175, 232, 327
AspS9I GGNCC 4 cut(s) 149, 214, 369, 622
AsuC2I CCSGG 2 cut(s) 17, 866
AsuHPI GGTGA 3 cut(s) 124, 926, 935
AsuII TTCGAA 1 cut(s) 1242
AvaI CYCGRG 1 cut(s) 569
AvaII GGWCC 2 cut(s) 369, 622
BaeGI GKGCMC 2 cut(s) 146, 592
BanII GRGCYC 1 cut(s) 552
BbsI GAAGAC 2 cut(s) 19, 1164
Bbv12I GWGCWC 1 cut(s) 592
BbvCI CCTCAGC 1 cut(s) 636
BbvI GCAGC 2 cut(s) 827, 909
BccI CCATC 2 cut(s) 904, 1057
BceAI ACGGC 1 cut(s) 480
BciT130I CCWGG 1 cut(s) 607
BclI TGATCA 1 cut(s) 916
BcnI CCSGG 2 cut(s) 17, 866
BcoDI GTCTC 1 cut(s) 621
BfmI CTRYAG 2 cut(s) 895, 1000
BfoI RGCGCY 1 cut(s) 176
BfuAI ACCTGC 1 cut(s) 25
BisI GCNGC 4 cut(s) 66, 816, 898, 1264
BlsI GCNGC 4 cut(s) 67, 817, 899, 1265
Bme1390I CCNGG 3 cut(s) 17, 607, 866
Bme18I GGWCC 2 cut(s) 369, 622
BmeT110I CYCGRG 1 cut(s) 569
BmgT120I GGNCC 4 cut(s) 149, 214, 369, 622
BmiI GGNNCC 2 cut(s) 623, 1120
BmrFI CCNGG 3 cut(s) 17, 607, 866
BmrI ACTGGG 1 cut(s) 156
BmsI GCATC 4 cut(s) 486, 712, 828, 1041
BmuI ACTGGG 1 cut(s) 156
BpiI GAAGAC 2 cut(s) 19, 1164
Bpu10I CCTNAGC 1 cut(s) 636
Bpu14I TTCGAA 1 cut(s) 1242
BpuMI CCSGG 2 cut(s) 17, 866
BsaAI YACGTR 1 cut(s) 271
Bsc4I CCNNNNNNNGG 3 cut(s) 399, 708, 1018
Bse118I RCCGGY 2 cut(s) 151, 216
Bse1I ACTGG 3 cut(s) 151, 481, 1086
Bse3DI GCAATG 3 cut(s) 563, 630, 1097
BseBI CCWGG 1 cut(s) 607
BseGI GGATG 5 cut(s) 208, 361, 724, 750, 915
BseLI CCNNNNNNNGG 3 cut(s) 399, 708, 1018
BseMI GCAATG 3 cut(s) 563, 630, 1097
BseMII CTCAG 3 cut(s) 339, 627, 674
BseNI ACTGG 3 cut(s) 151, 481, 1086
BseRI GAGGAG 1 cut(s) 148
BseSI GKGCMC 2 cut(s) 146, 592
BseXI GCAGC 2 cut(s) 827, 909
Bsh1236I CGCG 1 cut(s) 905
BshFI GGCC 5 cut(s) 151, 185, 216, 859, 1006
BsiHKAI GWGCWC 1 cut(s) 592
BsiHKCI CYCGRG 1 cut(s) 569
BsiSI CCGG 5 cut(s) 17, 31, 152, 217, 865
BslFI GGGAC 1 cut(s) 434
BslI CCNNNNNNNGG 3 cut(s) 399, 708, 1018
BsmAI GTCTC 1 cut(s) 621
BsmFI GGGAC 1 cut(s) 434
BsmI GAATGC 1 cut(s) 534
BsnI GGCC 5 cut(s) 151, 185, 216, 859, 1006
BsoBI CYCGRG 1 cut(s) 569
Bsp119I TTCGAA 1 cut(s) 1242
Bsp1286I GDGCHC 3 cut(s) 146, 552, 592
Bsp143I GATC 6 cut(s) 243, 677, 916, 970, 991, 1131
BspACI CCGC 6 cut(s) 65, 110, 260, 321, 905, 1263
BspANI GGCC 5 cut(s) 151, 185, 216, 859, 1006
BspCNI CTCAG 3 cut(s) 340, 628, 673
BspFNI CGCG 1 cut(s) 905
BspHI TCATGA 1 cut(s) 832
BspLI GGNNCC 2 cut(s) 623, 1120
BspMAI CTGCAG 1 cut(s) 899
BspMI ACCTGC 1 cut(s) 25
BspPI GGATC 3 cut(s) 685, 978, 999
BspT104I TTCGAA 1 cut(s) 1242
BsrDI GCAATG 3 cut(s) 563, 630, 1097
BsrFI RCCGGY 2 cut(s) 151, 216
BsrI ACTGG 3 cut(s) 151, 481, 1086
BssAI RCCGGY 2 cut(s) 151, 216
BssMI GATC 6 cut(s) 243, 677, 916, 970, 991, 1131
Bst2UI CCWGG 1 cut(s) 607
Bst4CI ACNGT 2 cut(s) 238, 1163
BstAPI GCANNNNNTGC 1 cut(s) 40
BstBAI YACGTR 1 cut(s) 271
BstBI TTCGAA 1 cut(s) 1242
BstC8I GCNNGC 3 cut(s) 218, 323, 895
BstDEI CTNAG 3 cut(s) 348, 636, 660
BstF5I GGATG 5 cut(s) 208, 361, 724, 750, 915
BstFNI CGCG 1 cut(s) 905
BstH2I RGCGCY 1 cut(s) 176
BstHHI GCGC 3 cut(s) 175, 232, 327
BstKTI GATC 6 cut(s) 246, 680, 919, 973, 994, 1134
BstMAI GTCTC 1 cut(s) 621
BstMBI GATC 6 cut(s) 243, 677, 916, 970, 991, 1131
BstMWI GCNNNNNNNGC 2 cut(s) 40, 815
BstNI CCWGG 1 cut(s) 607
BstNSI RCATGY 1 cut(s) 230
BstSCI CCNGG 3 cut(s) 15, 605, 864
BstSFI CTRYAG 2 cut(s) 895, 1000
BstSLI GKGCMC 2 cut(s) 146, 592
BstUI CGCG 1 cut(s) 905
BstV1I GCAGC 2 cut(s) 827, 909
BstV2I GAAGAC 2 cut(s) 19, 1164
BstX2I RGATCY 2 cut(s) 677, 970
BstYI RGATCY 2 cut(s) 677, 970
BsuRI GGCC 5 cut(s) 151, 185, 216, 859, 1006
BtsCI GGATG 5 cut(s) 208, 361, 724, 750, 915
BtsI GCAGTG 1 cut(s) 801
BtsIMutI CAGTG 3 cut(s) 144, 801, 846
BveI ACCTGC 1 cut(s) 25
Cac8I GCNNGC 3 cut(s) 218, 323, 895
CaiI CAGNNNCTG 1 cut(s) 1115
CciI TCATGA 1 cut(s) 832
CfoI GCGC 3 cut(s) 175, 232, 327
Cfr10I RCCGGY 2 cut(s) 151, 216
Cfr13I GGNCC 4 cut(s) 149, 214, 369, 622
Csp6I GTAC 2 cut(s) 268, 1182
CspCI CAANNNNNGTGG 2 cut(s) 169, 204
CviAII CATG 7 cut(s) 227, 800, 833, 1040, 1166, 1174, 1225
CviQI GTAC 2 cut(s) 268, 1182
DdeI CTNAG 3 cut(s) 348, 636, 660
DpnI GATC 6 cut(s) 245, 679, 918, 972, 993, 1133
DpnII GATC 6 cut(s) 243, 677, 916, 970, 991, 1131
EciI GGCGGA 1 cut(s) 275
Eco147I AGGCCT 1 cut(s) 185
Eco24I GRGCYC 1 cut(s) 552
Eco47I GGWCC 2 cut(s) 369, 622
Eco88I CYCGRG 1 cut(s) 569
EcoRI GAATTC 1 cut(s) 490
EcoRII CCWGG 1 cut(s) 605
EcoT22I ATGCAT 1 cut(s) 727
EcoT38I GRGCYC 1 cut(s) 552
FaeI CATG 7 cut(s) 230, 803, 836, 1043, 1169, 1177, 1228
FalI AAGNNNNNCTT 2 cut(s) 84, 116
FaqI GGGAC 1 cut(s) 434
FatI CATG 7 cut(s) 226, 799, 832, 1039, 1165, 1173, 1224
FauI CCCGC 2 cut(s) 314, 898
FbaI TGATCA 1 cut(s) 916
Fnu4HI GCNGC 4 cut(s) 66, 816, 898, 1264
FokI GGATG 5 cut(s) 215, 368, 731, 757, 922
FriOI GRGCYC 1 cut(s) 552
Fsp4HI GCNGC 4 cut(s) 66, 816, 898, 1264
FspI TGCGCA 1 cut(s) 231
GlaI GCGC 3 cut(s) 174, 231, 326
GluI GCNGC 4 cut(s) 66, 816, 898, 1264
HaeII RGCGCY 1 cut(s) 176
HaeIII GGCC 5 cut(s) 151, 185, 216, 859, 1006
HapII CCGG 5 cut(s) 17, 31, 152, 217, 865
HhaI GCGC 3 cut(s) 175, 232, 327
Hin1II CATG 7 cut(s) 230, 803, 836, 1043, 1169, 1177, 1228
Hin6I GCGC 3 cut(s) 173, 230, 325
HinP1I GCGC 3 cut(s) 173, 230, 325
HinfI GANTC 5 cut(s) 410, 641, 931, 1112, 1230
HpaII CCGG 5 cut(s) 17, 31, 152, 217, 865
HphI GGTGA 3 cut(s) 124, 926, 935
Hpy166II GTNNAC 4 cut(s) 162, 369, 462, 590
Hpy188I TCNGA 5 cut(s) 106, 285, 626, 663, 1217
Hpy188III TCNNGA 2 cut(s) 200, 833
Hpy8I GTNNAC 4 cut(s) 162, 369, 462, 590
HpyAV CCTTC 4 cut(s) 86, 952, 1180, 1194
HpyCH4III ACNGT 2 cut(s) 238, 1163
HpyCH4IV ACGT 2 cut(s) 164, 270
HpyF10VI GCNNNNNNNGC 2 cut(s) 40, 815
HpyF3I CTNAG 3 cut(s) 348, 636, 660
HpySE526I ACGT 2 cut(s) 164, 270
Hsp92II CATG 7 cut(s) 230, 803, 836, 1043, 1169, 1177, 1228
HspAI GCGC 3 cut(s) 173, 230, 325
KroI GCCGGC 1 cut(s) 216
KroNI GCCGGC 1 cut(s) 218
Ksp22I TGATCA 1 cut(s) 916
Kzo9I GATC 6 cut(s) 243, 677, 916, 970, 991, 1131
LmnI GCTCC 1 cut(s) 711
Lsp1109I GCAGC 2 cut(s) 827, 909
LweI GCATC 4 cut(s) 486, 712, 828, 1041
MaeII ACGT 2 cut(s) 164, 270
MaeIII GTNAC 5 cut(s) 472, 559, 868, 932, 1192
MalI GATC 6 cut(s) 245, 679, 918, 972, 993, 1133
MboI GATC 6 cut(s) 243, 677, 916, 970, 991, 1131
MboII GAAGA 4 cut(s) 19, 965, 1055, 1169
MfeI CAATTG 2 cut(s) 87, 593
MflI RGATCY 2 cut(s) 677, 970
MhlI GDGCHC 3 cut(s) 146, 552, 592
MluCI AATT 7 cut(s) 87, 208, 490, 593, 616, 1015, 1258
MlyI GAGTC 2 cut(s) 419, 940
MmeI TCCRAC 2 cut(s) 492, 945
Mph1103I ATGCAT 1 cut(s) 727
MroNI GCCGGC 1 cut(s) 216
MroXI GAANNNNTTC 1 cut(s) 100
MseI TTAA 2 cut(s) 954, 1128
MslI CAYNNNNRTG 2 cut(s) 128, 804
MspI CCGG 5 cut(s) 17, 31, 152, 217, 865
MspR9I CCNGG 3 cut(s) 17, 607, 866
MunI CAATTG 2 cut(s) 87, 593
Mva1269I GAATGC 1 cut(s) 534
MvaI CCWGG 1 cut(s) 607
MvnI CGCG 1 cut(s) 905
MwoI GCNNNNNNNGC 2 cut(s) 40, 815
NaeI GCCGGC 1 cut(s) 218
NciI CCSGG 2 cut(s) 17, 866
NdeII GATC 6 cut(s) 243, 677, 916, 970, 991, 1131
NgoMIV GCCGGC 1 cut(s) 216
NlaIII CATG 7 cut(s) 230, 803, 836, 1043, 1169, 1177, 1228
NlaIV GGNNCC 2 cut(s) 623, 1120
NmeAIII GCCGAG 1 cut(s) 149
NmuCI GTSAC 1 cut(s) 932
NsbI TGCGCA 1 cut(s) 231
NsiI ATGCAT 1 cut(s) 727
NspI RCATGY 1 cut(s) 230
NspV TTCGAA 1 cut(s) 1242
PagI TCATGA 1 cut(s) 832
PaqCI CACCTGC 1 cut(s) 25
PceI AGGCCT 1 cut(s) 185
PctI GAATGC 1 cut(s) 534
PdiI GCCGGC 1 cut(s) 218
PdmI GAANNNNTTC 1 cut(s) 100
PfeI GAWTC 3 cut(s) 641, 1112, 1230
PkrI GCNGC 4 cut(s) 67, 817, 899, 1265
PleI GAGTC 2 cut(s) 418, 939
PpsI GAGTC 2 cut(s) 418, 939
Ppu21I YACGTR 1 cut(s) 271
Psp6I CCWGG 1 cut(s) 605
PspGI CCWGG 1 cut(s) 605
PspN4I GGNNCC 2 cut(s) 623, 1120
PspPI GGNCC 4 cut(s) 149, 214, 369, 622
PstI CTGCAG 1 cut(s) 899
PstNI CAGNNNCTG 1 cut(s) 1115
PsuI RGATCY 2 cut(s) 677, 970
RsaI GTAC 2 cut(s) 269, 1183
RsaNI GTAC 2 cut(s) 268, 1182
RseI CAYNNNNRTG 2 cut(s) 128, 804
SaqAI TTAA 2 cut(s) 954, 1128
SatI GCNGC 4 cut(s) 66, 816, 898, 1264
Sau3AI GATC 6 cut(s) 243, 677, 916, 970, 991, 1131
Sau96I GGNCC 4 cut(s) 149, 214, 369, 622
SchI GAGTC 2 cut(s) 419, 940
ScrFI CCNGG 3 cut(s) 17, 607, 866
SduI GDGCHC 3 cut(s) 146, 552, 592
SfaNI GCATC 4 cut(s) 486, 712, 828, 1041
SfcI CTRYAG 2 cut(s) 895, 1000
SfuI TTCGAA 1 cut(s) 1242
SinI GGWCC 2 cut(s) 369, 622
SmiMI CAYNNNNRTG 2 cut(s) 128, 804
Sse9I AATT 7 cut(s) 87, 208, 490, 593, 616, 1015, 1258
SseBI AGGCCT 1 cut(s) 185
SsiI CCGC 6 cut(s) 65, 110, 260, 321, 905, 1263
SspI AATATT 1 cut(s) 733
StuI AGGCCT 1 cut(s) 185
StyD4I CCNGG 3 cut(s) 15, 605, 864
TaaI ACNGT 2 cut(s) 238, 1163
TaiI ACGT 2 cut(s) 167, 273
TaqI TCGA 3 cut(s) 494, 552, 1242
TaqII GACCGA 1 cut(s) 386
TasI AATT 7 cut(s) 87, 208, 490, 593, 616, 1015, 1258
TauI GCSGC 2 cut(s) 68, 1266
TfiI GAWTC 3 cut(s) 641, 1112, 1230
Tru1I TTAA 2 cut(s) 954, 1128
Tru9I TTAA 2 cut(s) 954, 1128
TscAI CASTG 3 cut(s) 151, 801, 853
TseFI GTSAC 1 cut(s) 932
TseI GCWGC 2 cut(s) 815, 897
Tsp45I GTSAC 1 cut(s) 932
TspDTI ATGAA 5 cut(s) 354, 761, 821, 1056, 1162
TspRI CASTG 3 cut(s) 151, 801, 853
VneI GTGCAC 1 cut(s) 588
VpaK11BI GGWCC 2 cut(s) 369, 622
XapI RAATTY 3 cut(s) 208, 490, 1015
XceI RCATGY 1 cut(s) 230
XcmI CCANNNNNNNNNTGG 1 cut(s) 1244
XmnI GAANNNNTTC 1 cut(s) 100
Zsp2I ATGCAT 1 cut(s) 727
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.