Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0014443

Physical Location & Seq

Genomic Coordinates Reverse (-)

7080206 .. 7081054

Gene Structure 849 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0088600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGAGGCTCTTTGATCCAAACACAGCTGCCCTTCAGGCACTGAAAGGGAGCGGAATCAGCGTCATACTTGGCATTCAAAACCAAGACTTACCCGCACTGGCAGCAAGTCAAGAAGCTGTGAACGCATGGTTCACCACCAATGTTGAGCCTTACCTTGATGGTATTGAACTCAGTTATATTGCTGTTGGCAATGAGGTTATTCCCGGGCCCTTAGGCAACTACGTTTTTCCTGTAATGAGGTTTTTACGGACTATGCTTGATGGCAGAGAGCTGACTGGGATTAAGGTGACCACGGTTGTTCCAGGAACCGCCTTAGGATCTTCATACCCGCCTTCAAGTGGTGTATTCGCAGCGGAGGCTGTTGAAGTCATGACCAGCATTGTTCAATTTATAGCGTCAACCAATTCATCTCTTATGATCAATGCGTACCCTTACTTTGCCTACAAGTCAGACCCTGCCAATGTTCACTTGGACTATGCTCTATTCACTATTAAAACCTCGGTGATTCAAGACGGACCACTCGGCTACTACAACCTGTTGGATGCCATAGTGGATTCGTTTTACACCGCAATGGAGAAAGTAGGCGGCCCTAATGTCACGGTTGTGGTATCTGAAAGTGGTTGGCCTTCTGCTGGGAGCGGACAGTTCACCACCCCAGAACTTGCAGGGACATATAACCGGAATTTCATCAAACACATCAGTTCAAGGGTAGGAACACCAAAAAGACCTGATCAATTCATTGAAGGATACATCTTTGCCATGTTCAATGAGAATCAGAAACCTGAGGGCGAGGAGCAGCATTTTGGTCTTTTTTGTCCTAACATGGAACCTGTTTATCCTGTGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

282

Amino Acids

30.65

Weight (kDa)

4.66

Isoelectric Point (pI)

31.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_17	PF00332	1 - 281	7.3e-82	Glycosyl hydrolases family 17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014443)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G44230 AT5G44230
fragaria_vesca	FvH4_1g12540
malus_domestica	MD15G1252800.v1.1
prunus_persica	Prupe.7G161300_v2.0.a1
pyrus_communis	pycom15g22270
rosa_chinensis	RchiOBHm_Chr2g0100491
rosa_laevigata	RLG00000016976
rosa_multiflora	Rmu_sc0000528.1_g000023 Rmu_sc0020397.1_g000001
rosa_roxburghii	Rroxscaffold_2G00142190
rosa_rugosa	Rorug02G0088600
rosa_samantha	Rh2AG138300 Rh2BG141300 Rh2CG143500 Rh2DG143100
rosa_wichuraiana	Rw2G010810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	51, 639
AciI	CCGC	8 cut(s)	51, 93, 309, 329, 353, 567, 585, 639
AclWI	GGATC	2 cut(s)	8, 325
AcsI	RAATTY	1 cut(s)	682
AcuI	CTGAAG	1 cut(s)	17
AfaI	GTAC	1 cut(s)	428
AfiI	CCNNNNNNNGG	2 cut(s)	338, 632
AgsI	TTSAA	9 cut(s)	77, 167, 336, 365, 386, 509, 705, 743, 766
AjnI	CCWGG	1 cut(s)	301
AleI	CACNNNNGTG	1 cut(s)	602
AluBI	AGCT	3 cut(s)	26, 116, 271
AluI	AGCT	3 cut(s)	26, 116, 271
AlwI	GGATC	2 cut(s)	8, 325
AlwNI	CAGNNNCTG	2 cut(s)	40, 455
Ama87I	CYCGRG	1 cut(s)	203
AoxI	GGCC	3 cut(s)	206, 586, 623
ApaI	GGGCCC	1 cut(s)	210
ApeKI	GCWGC	4 cut(s)	26, 101, 350, 796
ApoI	RAATTY	1 cut(s)	682
AspS9I	GGNCC	4 cut(s)	206, 207, 515, 587
AsuC2I	CCSGG	2 cut(s)	204, 205
AsuHPI	GGTGA	4 cut(s)	124, 298, 514, 640
AvaI	CYCGRG	1 cut(s)	203
AvaII	GGWCC	1 cut(s)	515
AxyI	CCTNAGG	3 cut(s)	211, 313, 783
BaeGI	GKGCMC	1 cut(s)	210
BanII	GRGCYC	1 cut(s)	210
BbvI	GCAGC	4 cut(s)	13, 113, 362, 808
BccI	CCATC	2 cut(s)	152, 254
BciT130I	CCWGG	1 cut(s)	303
BciVI	GTATCC	1 cut(s)	740
BclI	TGATCA	2 cut(s)	417, 730
BcnI	CCSGG	2 cut(s)	204, 205
BfuI	GTATCC	1 cut(s)	740
BglI	GCCNNNNNGGC	1 cut(s)	35
BisI	GCNGC	5 cut(s)	27, 102, 351, 586, 797
BlsI	GCNGC	5 cut(s)	28, 103, 352, 587, 798
Bme1390I	CCNGG	3 cut(s)	204, 205, 303
Bme18I	GGWCC	1 cut(s)	515
BmeT110I	CYCGRG	1 cut(s)	203
BmgT120I	GGNCC	4 cut(s)	206, 207, 515, 587
BmiI	GGNNCC	3 cut(s)	208, 307, 828
BmrFI	CCNGG	3 cut(s)	204, 205, 303
BmrI	ACTGGG	1 cut(s)	285
BmsI	GCATC	1 cut(s)	532
BmuI	ACTGGG	1 cut(s)	285
BpuMI	CCSGG	2 cut(s)	204, 205
BsaJI	CCNNGG	3 cut(s)	203, 291, 498
BsaWI	WCCGGW	1 cut(s)	678
Bsc4I	CCNNNNNNNGG	2 cut(s)	338, 632
Bse1I	ACTGG	2 cut(s)	102, 280
Bse21I	CCTNAGG	3 cut(s)	211, 313, 783
Bse3DI	GCAATG	2 cut(s)	196, 576
BseBI	CCWGG	1 cut(s)	303
BseDI	CCNNGG	3 cut(s)	203, 291, 498
BseGI	GGATG	1 cut(s)	547
BseLI	CCNNNNNNNGG	2 cut(s)	338, 632
BseMI	GCAATG	2 cut(s)	196, 576
BseMII	CTCAG	2 cut(s)	184, 774
BseNI	ACTGG	2 cut(s)	102, 280
BseRI	GAGGAG	1 cut(s)	806
BseSI	GKGCMC	1 cut(s)	210
BseXI	GCAGC	4 cut(s)	13, 113, 362, 808
BseYI	CCCAGC	1 cut(s)	632
BshFI	GGCC	3 cut(s)	208, 588, 625
BsiHKCI	CYCGRG	1 cut(s)	203
BsiSI	CCGG	2 cut(s)	204, 679
BslFI	GGGAC	1 cut(s)	682
BslI	CCNNNNNNNGG	2 cut(s)	338, 632
BsmFI	GGGAC	1 cut(s)	682
BsmI	GAATGC	1 cut(s)	72
BsnI	GGCC	3 cut(s)	208, 588, 625
BsoBI	CYCGRG	1 cut(s)	203
Bsp120I	GGGCCC	1 cut(s)	206
Bsp1286I	GDGCHC	1 cut(s)	210
Bsp143I	GATC	4 cut(s)	13, 317, 417, 730
BspACI	CCGC	8 cut(s)	51, 93, 309, 329, 353, 567, 585, 639
BspANI	GGCC	3 cut(s)	208, 588, 625
BspCNI	CTCAG	2 cut(s)	183, 775
BspHI	TCATGA	1 cut(s)	369
BspLI	GGNNCC	3 cut(s)	208, 307, 828
BspPI	GGATC	2 cut(s)	8, 325
BsrBI	CCGCTC	2 cut(s)	51, 639
BsrDI	GCAATG	2 cut(s)	196, 576
BsrI	ACTGG	2 cut(s)	102, 280
BssECI	CCNNGG	3 cut(s)	203, 291, 498
BssMI	GATC	4 cut(s)	13, 317, 417, 730
Bst2UI	CCWGG	1 cut(s)	303
Bst4CI	ACNGT	3 cut(s)	295, 601, 645
BstDEI	CTNAG	4 cut(s)	170, 211, 313, 783
BstDSI	CCRYGG	1 cut(s)	291
BstEII	GGTNACC	1 cut(s)	286
BstF5I	GGATG	1 cut(s)	547
BstKTI	GATC	4 cut(s)	16, 320, 420, 733
BstMBI	GATC	4 cut(s)	13, 317, 417, 730
BstMWI	GCNNNNNNNGC	5 cut(s)	35, 57, 101, 122, 356
BstNI	CCWGG	1 cut(s)	303
BstPI	GGTNACC	1 cut(s)	286
BstSCI	CCNGG	3 cut(s)	202, 203, 301
BstSLI	GKGCMC	1 cut(s)	210
BstV1I	GCAGC	4 cut(s)	13, 113, 362, 808
BstX2I	RGATCY	1 cut(s)	317
BstYI	RGATCY	1 cut(s)	317
Bsu36I	CCTNAGG	3 cut(s)	211, 313, 783
BsuI	GTATCC	1 cut(s)	740
BsuRI	GGCC	3 cut(s)	208, 588, 625
BtgI	CCRYGG	1 cut(s)	291
BtsCI	GGATG	1 cut(s)	547
BtsIMutI	CAGTG	2 cut(s)	38, 95
CaiI	CAGNNNCTG	2 cut(s)	40, 455
CciI	TCATGA	1 cut(s)	369
Cfr13I	GGNCC	4 cut(s)	206, 207, 515, 587
Cfr9I	CCCGGG	1 cut(s)	203
CseI	GACGC	2 cut(s)	49, 384
Csp6I	GTAC	1 cut(s)	427
CspCI	CAANNNNNGTGG	2 cut(s)	124, 159
CviAII	CATG	4 cut(s)	126, 370, 760, 823
CviQI	GTAC	1 cut(s)	427
DdeI	CTNAG	4 cut(s)	170, 211, 313, 783
DpnI	GATC	4 cut(s)	15, 319, 419, 732
DpnII	GATC	4 cut(s)	13, 317, 417, 730
Eco24I	GRGCYC	1 cut(s)	210
Eco47I	GGWCC	1 cut(s)	515
Eco57I	CTGAAG	1 cut(s)	17
Eco81I	CCTNAGG	3 cut(s)	211, 313, 783
Eco88I	CYCGRG	1 cut(s)	203
Eco91I	GGTNACC	1 cut(s)	286
EcoO109I	RGGNCCY	1 cut(s)	207
EcoO65I	GGTNACC	1 cut(s)	286
EcoRII	CCWGG	1 cut(s)	301
EcoT38I	GRGCYC	1 cut(s)	210
FaeI	CATG	4 cut(s)	129, 373, 763, 826
FaqI	GGGAC	1 cut(s)	682
FatI	CATG	4 cut(s)	125, 369, 759, 822
FauI	CCCGC	2 cut(s)	100, 336
FbaI	TGATCA	2 cut(s)	417, 730
Fnu4HI	GCNGC	5 cut(s)	27, 102, 351, 586, 797
FokI	GGATG	1 cut(s)	554
FriOI	GRGCYC	1 cut(s)	210
Fsp4HI	GCNGC	5 cut(s)	27, 102, 351, 586, 797
GluI	GCNGC	5 cut(s)	27, 102, 351, 586, 797
GsaI	CCCAGC	1 cut(s)	636
HaeIII	GGCC	3 cut(s)	208, 588, 625
HapII	CCGG	2 cut(s)	204, 679
HgaI	GACGC	2 cut(s)	49, 384
Hin1II	CATG	4 cut(s)	129, 373, 763, 826
HincII	GTYRAC	1 cut(s)	399
HindII	GTYRAC	1 cut(s)	399
HinfI	GANTC	4 cut(s)	54, 505, 554, 772
HpaII	CCGG	2 cut(s)	204, 679
HphI	GGTGA	4 cut(s)	124, 298, 514, 640
Hpy166II	GTNNAC	5 cut(s)	121, 132, 399, 466, 648
Hpy188I	TCNGA	3 cut(s)	451, 613, 777
Hpy188III	TCNNGA	3 cut(s)	110, 370, 509
Hpy8I	GTNNAC	5 cut(s)	121, 132, 399, 466, 648
HpyAV	CCTTC	4 cut(s)	41, 342, 636, 737
HpyCH4III	ACNGT	3 cut(s)	295, 601, 645
HpyCH4IV	ACGT	1 cut(s)	222
HpyCH4V	TGCA	1 cut(s)	665
HpyF10VI	GCNNNNNNNGC	5 cut(s)	35, 57, 101, 122, 356
HpyF3I	CTNAG	4 cut(s)	170, 211, 313, 783
HpySE526I	ACGT	1 cut(s)	222
Hsp92II	CATG	4 cut(s)	129, 373, 763, 826
Ksp22I	TGATCA	2 cut(s)	417, 730
Kzo9I	GATC	4 cut(s)	13, 317, 417, 730
LmnI	GCTCC	3 cut(s)	48, 636, 793
Lsp1109I	GCAGC	4 cut(s)	13, 113, 362, 808
LweI	GCATC	1 cut(s)	532
MaeII	ACGT	1 cut(s)	222
MaeIII	GTNAC	2 cut(s)	286, 595
MalI	GATC	4 cut(s)	15, 319, 419, 732
MbiI	CCGCTC	2 cut(s)	51, 639
MboI	GATC	4 cut(s)	13, 317, 417, 730
MboII	GAAGA	1 cut(s)	312
MflI	RGATCY	1 cut(s)	317
MhlI	GDGCHC	1 cut(s)	210
MluCI	AATT	4 cut(s)	386, 403, 682, 734
MmeI	TCCRAC	1 cut(s)	519
MnlI	CCTC	6 cut(s)	187, 231, 349, 508, 778, 784
MseI	TTAA	2 cut(s)	282, 492
MslI	CAYNNNNRTG	2 cut(s)	569, 602
MspA1I	CMGCKG	2 cut(s)	26, 353
MspI	CCGG	2 cut(s)	204, 679
MspR9I	CCNGG	3 cut(s)	204, 205, 303
Mva1269I	GAATGC	1 cut(s)	72
MvaI	CCWGG	1 cut(s)	303
MwoI	GCNNNNNNNGC	5 cut(s)	35, 57, 101, 122, 356
NciI	CCSGG	2 cut(s)	204, 205
NdeII	GATC	4 cut(s)	13, 317, 417, 730
NlaIII	CATG	4 cut(s)	129, 373, 763, 826
NlaIV	GGNNCC	3 cut(s)	208, 307, 828
NmeAIII	GCCGAG	1 cut(s)	501
NmuCI	GTSAC	2 cut(s)	286, 595
OliI	CACNNNNGTG	1 cut(s)	602
PagI	TCATGA	1 cut(s)	369
PctI	GAATGC	1 cut(s)	72
PfeI	GAWTC	4 cut(s)	54, 505, 554, 772
PfoI	TCCNGGA	1 cut(s)	301
PkrI	GCNGC	5 cut(s)	28, 103, 352, 587, 798
Psp6I	CCWGG	1 cut(s)	301
PspEI	GGTNACC	1 cut(s)	286
PspFI	CCCAGC	1 cut(s)	632
PspGI	CCWGG	1 cut(s)	301
PspN4I	GGNNCC	3 cut(s)	208, 307, 828
PspOMI	GGGCCC	1 cut(s)	206
PspPI	GGNCC	4 cut(s)	206, 207, 515, 587
PstNI	CAGNNNCTG	2 cut(s)	40, 455
PsuI	RGATCY	1 cut(s)	317
PvuII	CAGCTG	1 cut(s)	26
RsaI	GTAC	1 cut(s)	428
RsaNI	GTAC	1 cut(s)	427
RseI	CAYNNNNRTG	2 cut(s)	569, 602
SaqAI	TTAA	2 cut(s)	282, 492
SatI	GCNGC	5 cut(s)	27, 102, 351, 586, 797
Sau3AI	GATC	4 cut(s)	13, 317, 417, 730
Sau96I	GGNCC	4 cut(s)	206, 207, 515, 587
ScrFI	CCNGG	3 cut(s)	204, 205, 303
SduI	GDGCHC	1 cut(s)	210
SfaNI	GCATC	1 cut(s)	532
SinI	GGWCC	1 cut(s)	515
SmaI	CCCGGG	1 cut(s)	205
SmiMI	CAYNNNNRTG	2 cut(s)	569, 602
Sse9I	AATT	4 cut(s)	386, 403, 682, 734
SsiI	CCGC	8 cut(s)	51, 93, 309, 329, 353, 567, 585, 639
StyD4I	CCNGG	3 cut(s)	202, 203, 301
TaaI	ACNGT	3 cut(s)	295, 601, 645
TaiI	ACGT	1 cut(s)	225
TasI	AATT	4 cut(s)	386, 403, 682, 734
TauI	GCSGC	1 cut(s)	588
TfiI	GAWTC	4 cut(s)	54, 505, 554, 772
Tru1I	TTAA	2 cut(s)	282, 492
Tru9I	TTAA	2 cut(s)	282, 492
TscAI	CASTG	2 cut(s)	45, 102
TseFI	GTSAC	2 cut(s)	286, 595
TseI	GCWGC	4 cut(s)	26, 101, 350, 796
Tsp45I	GTSAC	2 cut(s)	286, 595
TspDTI	ATGAA	4 cut(s)	312, 396, 676, 727
TspGWI	ACGGA	2 cut(s)	262, 528
TspMI	CCCGGG	1 cut(s)	203
TspRI	CASTG	2 cut(s)	45, 102
VpaK11BI	GGWCC	1 cut(s)	515
XapI	RAATTY	1 cut(s)	682
XcmI	CCANNNNNNNNNTGG	1 cut(s)	466
XmaI	CCCGGG	1 cut(s)	203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.