Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0014443

Physical Location & Seq

Genomic Coordinates Forward (+)

12659742 .. 12661424

Gene Structure 1683 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG143500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1683 bp

ATGCCCACCACCTACCCGGAACTCGTCTTCCGGCAGGTGCTGCACCCGAACCCGTTTCTCTGGGCGGCTATGATTAGAGGGTGTGCAATTGAAGGAACTCTTTCGGAAGCGGTGAAGTATTACACTTTGATGAGGAGGGAGGGCACCGGCCCGGTTTCGTTTACGTTCTCGGCGCTGTTCAAGGCCTGTGGGAGTGGTCTGGATGTGAATTTGGGCCGGCAGATACATGCGCAGACGGTTTTGATCGGTGGGTTTGTGGCGGATTTGTACGTGGGGAACACTCTGATTGATATGTATTTGAAGTGTGGGTTTTTGGATTGCGGGCGCAAGGTGTTTGATGAAATGCCTGAGAGGGATGTGGTTTCGTGGACCGAGTTGATTGTGGCGTATGCCAAGAGTGGGGATATGGAGTCGGCGAGGGACTTGTTTCAGGATTTGAGTTTGAAAGATATGGTGGTGTGGACGGCTATGGTTACTGGTTATGCCCAGAATTCGATGCCGAAAGAGGCCTTGGATTGCTTTGAGAGAATGCGAGGTGCTGGTGTAGGGCTTGATGAGGTTACATTGCTCGGGGTCATTTCGGCTTGTGCACAATTGGGTGCTTCCAGGTATGCTAATTGGGTTCGAGACATTGCTGAGGAATCTGGTTTTGGGGCAACTCAGAATGTGCTTGTGGGATCTGCATTGATAGATATGTTCTCCAAGTGTGGGAGCTTGGATGATGCATACAATATTTTTCAGGGGATGAAGCAAAGGAATGTGTTTTCTTATAGCTCAATGATTTGGGGATTTGCAGTGCATGGAAATGCCAATGCAGCGATAGGATTGTTTCATGAGATGCTGACCACTGATGTAAGGCCGAACTGGGTTACTTTTATAGGTGTGCTAACTGCCTGCAGCCACGCGGGGATGGTTGATCAAGGTCGGCAGCTATTTGCAACGATGGAGAAGTATTACAATGTCACTCCATCGGCTGGTCATTACACTTGTATGGTAGACTTGCTTGGTCGAGCTGGGCGCTTGGAAGAAGCTCTCGAGCTAGCTGAGACAATGCCGATAGTCGCACATGGAGGTGTGTGGGGAGCACTACTTGGTGCGTGCCGTATCCATAAGAACCCCGACATTGCTCAAATTGCTGCCAGCCATCTATTTGAGCTTGAACCTAATAATATTGGAAACTATGTGATGCTCTCCAACATATATGCATCAGCAGGAAGGTGGGATGATGTTTCAAGTGTTAGGAAGCTGATGAGAGAAAAGGGTCTGAAAAAAAACCCTGCATATAGCTGGGTTGAAACAAAGAACGGACACGAAAAGTTTTGTGCAGGTGAAACGAGTCACCCCAAATACAACAAGATTAAGAAGGCGTTGGAGGATCTTCTAAACAGATTGCAGGATCGTGGCTATAGGCCAAACCTAAATTCGGTGGATTATGATGTGGGGGATGAAGAAAAGATGCGTATATTGATGGCTCATAGCGAAAAACTGGCTTTGGCATACGCATTGCTCTACGCAGATTCTGGTTCCACCATTAAGATCGCCAAGAACATAAGGATTTGTGAAGACTGTCATGCCTTCATGTGTGGTGCATCACGGGTTACAGGAAGGCATATTATTGTCAGAGATAACATGAGATTCCACCACTTCGAAAATGGGACTTGTAATTGCGGCAACTTTTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

560

Amino Acids

62.16

Weight (kDa)

6.26

Isoelectric Point (pI)

30.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	150 - 197	8e-07	PPR repeat family
PPR	PF01535	152 - 182	2.9e-07	PPR repeat
PPR_2	PF13041	252 - 300	1.6e-08	PPR repeat family
E_motif	PF20431	370 - 432	1.1e-21	E motif
DYW_deaminase	PF14432	468 - 560	1.4e-40	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0014443)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G44230 AT5G44230
fragaria_vesca	FvH4_1g12540
malus_domestica	MD15G1252800.v1.1
prunus_persica	Prupe.7G161300_v2.0.a1
pyrus_communis	pycom15g22270
rosa_chinensis	RchiOBHm_Chr2g0100491
rosa_laevigata	RLG00000016976
rosa_multiflora	Rmu_sc0000528.1_g000023 Rmu_sc0020397.1_g000001
rosa_roxburghii	Rroxscaffold_2G00142190
rosa_rugosa	Rorug02G0088600
rosa_samantha	Rh2AG138300 Rh2BG141300 Rh2CG143500 Rh2DG143100
rosa_wichuraiana	Rw2G010810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	25, 1316
Acc16I	TGCGCA	1 cut(s)	231
Acc36I	ACCTGC	2 cut(s)	25, 1316
AccB1I	GGYRCC	1 cut(s)	143
AccB7I	CCANNNNNTGG	1 cut(s)	974
AccI	GTMKAC	1 cut(s)	996
AccII	CGCG	1 cut(s)	905
AciI	CCGC	6 cut(s)	65, 110, 260, 321, 905, 1668
AclWI	GGATC	3 cut(s)	685, 1383, 1404
AcsI	RAATTY	3 cut(s)	208, 490, 1420
AfaI	GTAC	1 cut(s)	269
AfiI	CCNNNNNNNGG	4 cut(s)	399, 708, 974, 1423
AgsI	TTSAA	7 cut(s)	92, 181, 301, 445, 1160, 1233, 1295
AjnI	CCWGG	1 cut(s)	605
AjuI	GAANNNNNNNTTGG	6 cut(s)	494, 526, 633, 665, 1405, 1437
AloI	GAACNNNNNNTCC	2 cut(s)	12, 44
Alw21I	GWGCWC	2 cut(s)	592, 1087
Alw26I	GTCTC	2 cut(s)	621, 1040
Alw44I	GTGCAC	1 cut(s)	588
AlwI	GGATC	3 cut(s)	685, 1383, 1404
AlwNI	CAGNNNCTG	2 cut(s)	40, 1520
Ama87I	CYCGRG	2 cut(s)	569, 1034
AoxI	GGCC	6 cut(s)	148, 183, 214, 507, 857, 1409
ApaLI	GTGCAC	1 cut(s)	588
ApeKI	GCWGC	5 cut(s)	40, 815, 897, 928, 1136
ApoI	RAATTY	3 cut(s)	208, 490, 1420
Asp700I	GAANNNNTTC	1 cut(s)	100
AspLEI	GCGC	4 cut(s)	175, 232, 327, 1020
AspS9I	GGNCC	3 cut(s)	149, 214, 369
AsuC2I	CCSGG	2 cut(s)	17, 152
AsuHPI	GGTGA	3 cut(s)	124, 1331, 1340
AsuII	TTCGAA	1 cut(s)	1647
AsuNHI	GCTAGC	1 cut(s)	1039
AvaI	CYCGRG	2 cut(s)	569, 1034
AvaII	GGWCC	1 cut(s)	369
BaeGI	GKGCMC	2 cut(s)	146, 592
BanI	GGYRCC	1 cut(s)	143
BbsI	GAAGAC	2 cut(s)	19, 1569
Bbv12I	GWGCWC	2 cut(s)	592, 1087
BbvCI	CCTCAGC	1 cut(s)	636
BbvI	GCAGC	5 cut(s)	27, 827, 909, 940, 1123
BccI	CCATC	5 cut(s)	904, 937, 976, 1152, 1462
BceAI	ACGGC	2 cut(s)	480, 1086
BciT130I	CCWGG	1 cut(s)	607
BciVI	GTATCC	1 cut(s)	1115
BclI	TGATCA	1 cut(s)	916
BcnI	CCSGG	2 cut(s)	17, 152
BcoDI	GTCTC	2 cut(s)	621, 1040
BfaI	CTAG	1 cut(s)	1040
BfmI	CTRYAG	2 cut(s)	895, 1405
BfoI	RGCGCY	2 cut(s)	176, 1021
BfuAI	ACCTGC	2 cut(s)	25, 1316
BfuI	GTATCC	1 cut(s)	1115
BisI	GCNGC	7 cut(s)	41, 66, 816, 898, 929, 1137, 1669
BlsI	GCNGC	7 cut(s)	42, 67, 817, 899, 930, 1138, 1670
Bme1390I	CCNGG	3 cut(s)	17, 152, 607
Bme18I	GGWCC	1 cut(s)	369
BmeT110I	CYCGRG	2 cut(s)	569, 1034
BmgT120I	GGNCC	3 cut(s)	149, 214, 369
BmiI	GGNNCC	2 cut(s)	145, 1525
BmrFI	CCNGG	3 cut(s)	17, 152, 607
BmrI	ACTGGG	1 cut(s)	874
BmsI	GCATC	7 cut(s)	486, 712, 828, 1176, 1214, 1446, 1598
BmtI	GCTAGC	1 cut(s)	1043
BmuI	ACTGGG	1 cut(s)	874
BpiI	GAAGAC	2 cut(s)	19, 1569
Bpu10I	CCTNAGC	1 cut(s)	636
Bpu14I	TTCGAA	1 cut(s)	1647
BpuMI	CCSGG	2 cut(s)	17, 152
BsaAI	YACGTR	1 cut(s)	271
BsaJI	CCNNGG	1 cut(s)	510
Bsc4I	CCNNNNNNNGG	4 cut(s)	399, 708, 974, 1423
Bse118I	RCCGGY	2 cut(s)	146, 216
Bse1I	ACTGG	3 cut(s)	481, 869, 1491
Bse3DI	GCAATG	4 cut(s)	563, 630, 1122, 1502
BseBI	CCWGG	1 cut(s)	607
BseDI	CCNNGG	1 cut(s)	510
BseGI	GGATG	7 cut(s)	208, 361, 724, 750, 915, 1228, 1450
BseLI	CCNNNNNNNGG	4 cut(s)	399, 708, 974, 1423
BseMI	GCAATG	4 cut(s)	563, 630, 1122, 1502
BseMII	CTCAG	4 cut(s)	339, 627, 674, 1035
BseNI	ACTGG	3 cut(s)	481, 869, 1491
BseRI	GAGGAG	1 cut(s)	148
BseSI	GKGCMC	2 cut(s)	146, 592
BseXI	GCAGC	5 cut(s)	27, 827, 909, 940, 1123
BseYI	CCCAGC	2 cut(s)	1013, 1287
BsgI	GTGCAG	2 cut(s)	26, 1344
Bsh1236I	CGCG	1 cut(s)	905
BshFI	GGCC	6 cut(s)	150, 185, 216, 509, 859, 1411
BshNI	GGYRCC	1 cut(s)	143
BsiHKAI	GWGCWC	2 cut(s)	592, 1087
BsiHKCI	CYCGRG	2 cut(s)	569, 1034
BsiSI	CCGG	5 cut(s)	17, 31, 147, 152, 217
BslFI	GGGAC	2 cut(s)	434, 1669
BslI	CCNNNNNNNGG	4 cut(s)	399, 708, 974, 1423
BsmAI	GTCTC	2 cut(s)	621, 1040
BsmFI	GGGAC	2 cut(s)	434, 1669
BsmI	GAATGC	1 cut(s)	534
BsnI	GGCC	6 cut(s)	150, 185, 216, 509, 859, 1411
BsoBI	CYCGRG	2 cut(s)	569, 1034
Bsp119I	TTCGAA	1 cut(s)	1647
Bsp1286I	GDGCHC	3 cut(s)	146, 592, 1087
Bsp143I	GATC	6 cut(s)	243, 677, 916, 1375, 1396, 1536
BspACI	CCGC	6 cut(s)	65, 110, 260, 321, 905, 1668
BspANI	GGCC	6 cut(s)	150, 185, 216, 509, 859, 1411
BspCNI	CTCAG	4 cut(s)	340, 628, 673, 1036
BspFNI	CGCG	1 cut(s)	905
BspHI	TCATGA	1 cut(s)	832
BspLI	GGNNCC	2 cut(s)	145, 1525
BspMAI	CTGCAG	1 cut(s)	899
BspMI	ACCTGC	2 cut(s)	25, 1316
BspOI	GCTAGC	1 cut(s)	1043
BspPI	GGATC	3 cut(s)	685, 1383, 1404
BspT104I	TTCGAA	1 cut(s)	1647
BspT107I	GGYRCC	1 cut(s)	143
BsrDI	GCAATG	4 cut(s)	563, 630, 1122, 1502
BsrFI	RCCGGY	2 cut(s)	146, 216
BsrI	ACTGG	3 cut(s)	481, 869, 1491
BssAI	RCCGGY	2 cut(s)	146, 216
BssECI	CCNNGG	1 cut(s)	510
BssMI	GATC	6 cut(s)	243, 677, 916, 1375, 1396, 1536
BssT1I	CCWWGG	1 cut(s)	510
Bst2UI	CCWGG	1 cut(s)	607
Bst4CI	ACNGT	2 cut(s)	238, 1568
BstAPI	GCANNNNNTGC	1 cut(s)	40
BstBAI	YACGTR	1 cut(s)	271
BstBI	TTCGAA	1 cut(s)	1647
BstC8I	GCNNGC	6 cut(s)	218, 323, 895, 1041, 1099, 1141
BstDEI	CTNAG	4 cut(s)	348, 636, 660, 1044
BstF5I	GGATG	7 cut(s)	208, 361, 724, 750, 915, 1228, 1450
BstFNI	CGCG	1 cut(s)	905
BstH2I	RGCGCY	2 cut(s)	176, 1021
BstHHI	GCGC	4 cut(s)	175, 232, 327, 1020
BstKTI	GATC	6 cut(s)	246, 680, 919, 1378, 1399, 1539
BstMAI	GTCTC	2 cut(s)	621, 1040
BstMBI	GATC	6 cut(s)	243, 677, 916, 1375, 1396, 1536
BstMWI	GCNNNNNNNGC	3 cut(s)	40, 815, 1133
BstNI	CCWGG	1 cut(s)	607
BstNSI	RCATGY	1 cut(s)	230
BstSCI	CCNGG	3 cut(s)	15, 150, 605
BstSFI	CTRYAG	2 cut(s)	895, 1405
BstSLI	GKGCMC	2 cut(s)	146, 592
BstUI	CGCG	1 cut(s)	905
BstV1I	GCAGC	5 cut(s)	27, 827, 909, 940, 1123
BstV2I	GAAGAC	2 cut(s)	19, 1569
BstX2I	RGATCY	2 cut(s)	677, 1375
BstYI	RGATCY	2 cut(s)	677, 1375
BsuI	GTATCC	1 cut(s)	1115
BsuRI	GGCC	6 cut(s)	150, 185, 216, 509, 859, 1411
BtsCI	GGATG	7 cut(s)	208, 361, 724, 750, 915, 1228, 1450
BtsI	GCAGTG	1 cut(s)	801
BtsIMutI	CAGTG	2 cut(s)	801, 846
BveI	ACCTGC	2 cut(s)	25, 1316
Cac8I	GCNNGC	6 cut(s)	218, 323, 895, 1041, 1099, 1141
CaiI	CAGNNNCTG	2 cut(s)	40, 1520
CciI	TCATGA	1 cut(s)	832
CfoI	GCGC	4 cut(s)	175, 232, 327, 1020
Cfr10I	RCCGGY	2 cut(s)	146, 216
Cfr13I	GGNCC	3 cut(s)	149, 214, 369
Csp6I	GTAC	1 cut(s)	268
CspCI	CAANNNNNGTGG	2 cut(s)	169, 204
CviAII	CATG	7 cut(s)	227, 800, 833, 1067, 1571, 1579, 1630
CviQI	GTAC	1 cut(s)	268
DdeI	CTNAG	4 cut(s)	348, 636, 660, 1044
DpnI	GATC	6 cut(s)	245, 679, 918, 1377, 1398, 1538
DpnII	GATC	6 cut(s)	243, 677, 916, 1375, 1396, 1536
EciI	GGCGGA	1 cut(s)	275
Eco130I	CCWWGG	1 cut(s)	510
Eco147I	AGGCCT	2 cut(s)	185, 509
Eco47I	GGWCC	1 cut(s)	369
Eco88I	CYCGRG	2 cut(s)	569, 1034
EcoRI	GAATTC	1 cut(s)	490
EcoRII	CCWGG	1 cut(s)	605
EcoT14I	CCWWGG	1 cut(s)	510
EcoT22I	ATGCAT	2 cut(s)	727, 1207
ErhI	CCWWGG	1 cut(s)	510
FaeI	CATG	7 cut(s)	230, 803, 836, 1070, 1574, 1582, 1633
FalI	AAGNNNNNCTT	2 cut(s)	84, 116
FaqI	GGGAC	2 cut(s)	434, 1669
FatI	CATG	7 cut(s)	226, 799, 832, 1066, 1570, 1578, 1629
FauI	CCCGC	2 cut(s)	314, 898
FbaI	TGATCA	1 cut(s)	916
FblI	GTMKAC	1 cut(s)	996
Fnu4HI	GCNGC	7 cut(s)	41, 66, 816, 898, 929, 1137, 1669
FokI	GGATG	7 cut(s)	215, 368, 731, 757, 922, 1235, 1457
Fsp4HI	GCNGC	7 cut(s)	41, 66, 816, 898, 929, 1137, 1669
FspBI	CTAG	1 cut(s)	1040
FspI	TGCGCA	1 cut(s)	231
GlaI	GCGC	4 cut(s)	174, 231, 326, 1019
GluI	GCNGC	7 cut(s)	41, 66, 816, 898, 929, 1137, 1669
GsaI	CCCAGC	2 cut(s)	1017, 1291
HaeII	RGCGCY	2 cut(s)	176, 1021
HaeIII	GGCC	6 cut(s)	150, 185, 216, 509, 859, 1411
HapII	CCGG	5 cut(s)	17, 31, 147, 152, 217
HhaI	GCGC	4 cut(s)	175, 232, 327, 1020
Hin1II	CATG	7 cut(s)	230, 803, 836, 1070, 1574, 1582, 1633
Hin6I	GCGC	4 cut(s)	173, 230, 325, 1018
HinP1I	GCGC	4 cut(s)	173, 230, 325, 1018
HinfI	GANTC	5 cut(s)	410, 641, 1336, 1517, 1635
HpaII	CCGG	5 cut(s)	17, 31, 147, 152, 217
HphI	GGTGA	3 cut(s)	124, 1331, 1340
Hpy166II	GTNNAC	5 cut(s)	162, 369, 462, 590, 997
Hpy188I	TCNGA	5 cut(s)	106, 285, 663, 1266, 1622
Hpy188III	TCNNGA	5 cut(s)	200, 431, 626, 833, 1034
Hpy8I	GTNNAC	5 cut(s)	162, 369, 462, 590, 997
HpyAV	CCTTC	5 cut(s)	86, 1209, 1357, 1585, 1599
HpyCH4III	ACNGT	2 cut(s)	238, 1568
HpyCH4IV	ACGT	2 cut(s)	164, 270
HpyF10VI	GCNNNNNNNGC	3 cut(s)	40, 815, 1133
HpyF3I	CTNAG	4 cut(s)	348, 636, 660, 1044
HpySE526I	ACGT	2 cut(s)	164, 270
Hsp92II	CATG	7 cut(s)	230, 803, 836, 1070, 1574, 1582, 1633
HspAI	GCGC	4 cut(s)	173, 230, 325, 1018
KroI	GCCGGC	1 cut(s)	216
KroNI	GCCGGC	1 cut(s)	218
Ksp22I	TGATCA	1 cut(s)	916
Kzo9I	GATC	6 cut(s)	243, 677, 916, 1375, 1396, 1536
LmnI	GCTCC	2 cut(s)	711, 1082
Lsp1109I	GCAGC	5 cut(s)	27, 827, 909, 940, 1123
LweI	GCATC	7 cut(s)	486, 712, 828, 1176, 1214, 1446, 1598
MaeI	CTAG	1 cut(s)	1040
MaeII	ACGT	2 cut(s)	164, 270
MaeIII	GTNAC	6 cut(s)	472, 559, 868, 961, 1337, 1597
MalI	GATC	6 cut(s)	245, 679, 918, 1377, 1398, 1538
MboI	GATC	6 cut(s)	243, 677, 916, 1375, 1396, 1536
MboII	GAAGA	5 cut(s)	19, 1037, 1370, 1460, 1574
MfeI	CAATTG	2 cut(s)	87, 593
MflI	RGATCY	2 cut(s)	677, 1375
MhlI	GDGCHC	3 cut(s)	146, 592, 1087
MluCI	AATT	8 cut(s)	87, 208, 490, 593, 616, 1131, 1420, 1663
MlyI	GAGTC	2 cut(s)	419, 1345
MmeI	TCCRAC	2 cut(s)	1218, 1350
Mph1103I	ATGCAT	2 cut(s)	727, 1207
MroNI	GCCGGC	1 cut(s)	216
MroXI	GAANNNNTTC	1 cut(s)	100
MseI	TTAA	2 cut(s)	1359, 1533
MslI	CAYNNNNRTG	4 cut(s)	128, 804, 989, 1071
MspI	CCGG	5 cut(s)	17, 31, 147, 152, 217
MspR9I	CCNGG	3 cut(s)	17, 152, 607
MunI	CAATTG	2 cut(s)	87, 593
Mva1269I	GAATGC	1 cut(s)	534
MvaI	CCWGG	1 cut(s)	607
MvnI	CGCG	1 cut(s)	905
MwoI	GCNNNNNNNGC	3 cut(s)	40, 815, 1133
NaeI	GCCGGC	1 cut(s)	218
NciI	CCSGG	2 cut(s)	17, 152
NdeII	GATC	6 cut(s)	243, 677, 916, 1375, 1396, 1536
NgoMIV	GCCGGC	1 cut(s)	216
NheI	GCTAGC	1 cut(s)	1039
NlaIII	CATG	7 cut(s)	230, 803, 836, 1070, 1574, 1582, 1633
NlaIV	GGNNCC	2 cut(s)	145, 1525
NmeAIII	GCCGAG	1 cut(s)	149
NmuCI	GTSAC	2 cut(s)	961, 1337
NsbI	TGCGCA	1 cut(s)	231
NsiI	ATGCAT	2 cut(s)	727, 1207
NspI	RCATGY	1 cut(s)	230
NspV	TTCGAA	1 cut(s)	1647
PaeR7I	CTCGAG	1 cut(s)	1034
PagI	TCATGA	1 cut(s)	832
PaqCI	CACCTGC	2 cut(s)	25, 1316
PceI	AGGCCT	2 cut(s)	185, 509
PctI	GAATGC	1 cut(s)	534
PdiI	GCCGGC	1 cut(s)	218
PdmI	GAANNNNTTC	1 cut(s)	100
PfeI	GAWTC	3 cut(s)	641, 1517, 1635
PflMI	CCANNNNNTGG	1 cut(s)	974
PkrI	GCNGC	7 cut(s)	42, 67, 817, 899, 930, 1138, 1670
PleI	GAGTC	2 cut(s)	418, 1344
PpsI	GAGTC	2 cut(s)	418, 1344
Ppu21I	YACGTR	1 cut(s)	271
Psp6I	CCWGG	1 cut(s)	605
PspFI	CCCAGC	2 cut(s)	1013, 1287
PspGI	CCWGG	1 cut(s)	605
PspN4I	GGNNCC	2 cut(s)	145, 1525
PspPI	GGNCC	3 cut(s)	149, 214, 369
PstI	CTGCAG	1 cut(s)	899
PstNI	CAGNNNCTG	2 cut(s)	40, 1520
PsuI	RGATCY	2 cut(s)	677, 1375
RsaI	GTAC	1 cut(s)	269
RsaNI	GTAC	1 cut(s)	268
RseI	CAYNNNNRTG	4 cut(s)	128, 804, 989, 1071
SaqAI	TTAA	2 cut(s)	1359, 1533
SatI	GCNGC	7 cut(s)	41, 66, 816, 898, 929, 1137, 1669
Sau3AI	GATC	6 cut(s)	243, 677, 916, 1375, 1396, 1536
Sau96I	GGNCC	3 cut(s)	149, 214, 369
SchI	GAGTC	2 cut(s)	419, 1345
ScrFI	CCNGG	3 cut(s)	17, 152, 607
SduI	GDGCHC	3 cut(s)	146, 592, 1087
SfaNI	GCATC	7 cut(s)	486, 712, 828, 1176, 1214, 1446, 1598
SfcI	CTRYAG	2 cut(s)	895, 1405
Sfr274I	CTCGAG	1 cut(s)	1034
SfuI	TTCGAA	1 cut(s)	1647
SinI	GGWCC	1 cut(s)	369
SlaI	CTCGAG	1 cut(s)	1034
SmiMI	CAYNNNNRTG	4 cut(s)	128, 804, 989, 1071
SmlI	CTYRAG	1 cut(s)	1034
SmoI	CTYRAG	1 cut(s)	1034
Sse9I	AATT	8 cut(s)	87, 208, 490, 593, 616, 1131, 1420, 1663
SseBI	AGGCCT	2 cut(s)	185, 509
SsiI	CCGC	6 cut(s)	65, 110, 260, 321, 905, 1668
SspI	AATATT	2 cut(s)	733, 1171
SspMI	CTAG	1 cut(s)	1040
StuI	AGGCCT	2 cut(s)	185, 509
StyD4I	CCNGG	3 cut(s)	15, 150, 605
StyI	CCWWGG	1 cut(s)	510
TaaI	ACNGT	2 cut(s)	238, 1568
TaiI	ACGT	2 cut(s)	167, 273
TaqI	TCGA	5 cut(s)	494, 625, 1009, 1035, 1647
TaqII	GACCGA	1 cut(s)	386
TasI	AATT	8 cut(s)	87, 208, 490, 593, 616, 1131, 1420, 1663
TauI	GCSGC	2 cut(s)	68, 1671
TfiI	GAWTC	3 cut(s)	641, 1517, 1635
Tru1I	TTAA	2 cut(s)	1359, 1533
Tru9I	TTAA	2 cut(s)	1359, 1533
TscAI	CASTG	2 cut(s)	801, 853
TseFI	GTSAC	2 cut(s)	961, 1337
TseI	GCWGC	5 cut(s)	40, 815, 897, 928, 1136
Tsp45I	GTSAC	2 cut(s)	961, 1337
TspDTI	ATGAA	5 cut(s)	354, 761, 821, 1461, 1567
TspGWI	ACGGA	1 cut(s)	1320
TspRI	CASTG	2 cut(s)	801, 853
Van91I	CCANNNNNTGG	1 cut(s)	974
VneI	GTGCAC	1 cut(s)	588
VpaK11BI	GGWCC	1 cut(s)	369
XapI	RAATTY	3 cut(s)	208, 490, 1420
XceI	RCATGY	1 cut(s)	230
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1649
XhoI	CTCGAG	1 cut(s)	1034
XmiI	GTMKAC	1 cut(s)	996
XmnI	GAANNNNTTC	1 cut(s)	100
XspI	CTAG	1 cut(s)	1040
Zsp2I	ATGCAT	2 cut(s)	727, 1207

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.