Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G44230 AT5G44230 |
| fragaria_vesca | FvH4_1g12540 |
| malus_domestica | MD15G1252800.v1.1 |
| prunus_persica | Prupe.7G161300_v2.0.a1 |
| pyrus_communis | pycom15g22270 |
| rosa_chinensis | RchiOBHm_Chr2g0100491 |
| rosa_laevigata | RLG00000016976 |
| rosa_multiflora | Rmu_sc0000528.1_g000023 Rmu_sc0020397.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00142190 |
| rosa_rugosa | Rorug02G0088600 |
| rosa_samantha | Rh2AG138300 Rh2BG141300 Rh2CG143500 Rh2DG143100 |
| rosa_wichuraiana | Rw2G010810 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 483 |
| AclWI | GGATC | 1 cut(s) | 219 |
| AcsI | RAATTY | 2 cut(s) | 85, 235 |
| AfaI | GTAC | 1 cut(s) | 403 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 238 |
| AgsI | TTSAA | 1 cut(s) | 40 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 89, 121, 220, 252 |
| Alw21I | GWGCWC | 1 cut(s) | 187 |
| Alw44I | GTGCAC | 1 cut(s) | 183 |
| AlwI | GGATC | 1 cut(s) | 219 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 335 |
| Ama87I | CYCGRG | 1 cut(s) | 164 |
| AoxI | GGCC | 1 cut(s) | 224 |
| ApaLI | GTGCAC | 1 cut(s) | 183 |
| ApoI | RAATTY | 2 cut(s) | 85, 235 |
| AsuII | TTCGAA | 1 cut(s) | 462 |
| AvaI | CYCGRG | 1 cut(s) | 164 |
| BaeGI | GKGCMC | 1 cut(s) | 187 |
| BanII | GRGCYC | 1 cut(s) | 147 |
| BbsI | GAAGAC | 1 cut(s) | 384 |
| Bbv12I | GWGCWC | 1 cut(s) | 187 |
| BccI | CCATC | 1 cut(s) | 277 |
| BceAI | ACGGC | 1 cut(s) | 75 |
| BfmI | CTRYAG | 1 cut(s) | 220 |
| BisI | GCNGC | 1 cut(s) | 484 |
| BlsI | GCNGC | 1 cut(s) | 485 |
| BmeT110I | CYCGRG | 1 cut(s) | 164 |
| BmiI | GGNNCC | 1 cut(s) | 340 |
| BmsI | GCATC | 2 cut(s) | 81, 261 |
| BpiI | GAAGAC | 1 cut(s) | 384 |
| Bpu14I | TTCGAA | 1 cut(s) | 462 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 238 |
| Bse1I | ACTGG | 2 cut(s) | 76, 306 |
| Bse3DI | GCAATG | 2 cut(s) | 158, 317 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 238 |
| BseMI | GCAATG | 2 cut(s) | 158, 317 |
| BseNI | ACTGG | 2 cut(s) | 76, 306 |
| BseSI | GKGCMC | 1 cut(s) | 187 |
| BshFI | GGCC | 1 cut(s) | 226 |
| BsiHKAI | GWGCWC | 1 cut(s) | 187 |
| BsiHKCI | CYCGRG | 1 cut(s) | 164 |
| BslFI | GGGAC | 1 cut(s) | 29 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 238 |
| BsmFI | GGGAC | 1 cut(s) | 29 |
| BsmI | GAATGC | 1 cut(s) | 129 |
| BsnI | GGCC | 1 cut(s) | 226 |
| BsoBI | CYCGRG | 1 cut(s) | 164 |
| Bsp119I | TTCGAA | 1 cut(s) | 462 |
| Bsp1286I | GDGCHC | 2 cut(s) | 147, 187 |
| Bsp143I | GATC | 2 cut(s) | 211, 351 |
| BspACI | CCGC | 1 cut(s) | 483 |
| BspANI | GGCC | 1 cut(s) | 226 |
| BspLI | GGNNCC | 1 cut(s) | 340 |
| BspPI | GGATC | 1 cut(s) | 219 |
| BspT104I | TTCGAA | 1 cut(s) | 462 |
| BsrDI | GCAATG | 2 cut(s) | 158, 317 |
| BsrI | ACTGG | 2 cut(s) | 76, 306 |
| BssMI | GATC | 2 cut(s) | 211, 351 |
| Bst4CI | ACNGT | 1 cut(s) | 383 |
| BstBI | TTCGAA | 1 cut(s) | 462 |
| BstKTI | GATC | 2 cut(s) | 214, 354 |
| BstMBI | GATC | 2 cut(s) | 211, 351 |
| BstSFI | CTRYAG | 1 cut(s) | 220 |
| BstSLI | GKGCMC | 1 cut(s) | 187 |
| BstV2I | GAAGAC | 1 cut(s) | 384 |
| BsuRI | GGCC | 1 cut(s) | 226 |
| CaiI | CAGNNNCTG | 1 cut(s) | 335 |
| Csp6I | GTAC | 1 cut(s) | 402 |
| CviAII | CATG | 4 cut(s) | 260, 386, 394, 445 |
| CviJI | RGCY | 7 cut(s) | 62, 145, 179, 219, 226, 287, 305 |
| CviKI_1 | RGCY | 7 cut(s) | 62, 145, 179, 219, 226, 287, 305 |
| CviQI | GTAC | 1 cut(s) | 402 |
| DpnI | GATC | 2 cut(s) | 213, 353 |
| DpnII | GATC | 2 cut(s) | 211, 351 |
| Eco24I | GRGCYC | 1 cut(s) | 147 |
| Eco88I | CYCGRG | 1 cut(s) | 164 |
| EcoRI | GAATTC | 1 cut(s) | 85 |
| EcoT38I | GRGCYC | 1 cut(s) | 147 |
| FaeI | CATG | 4 cut(s) | 263, 389, 397, 448 |
| FaqI | GGGAC | 1 cut(s) | 29 |
| FatI | CATG | 4 cut(s) | 259, 385, 393, 444 |
| Fnu4HI | GCNGC | 1 cut(s) | 484 |
| FriOI | GRGCYC | 1 cut(s) | 147 |
| Fsp4HI | GCNGC | 1 cut(s) | 484 |
| GluI | GCNGC | 1 cut(s) | 484 |
| HaeIII | GGCC | 1 cut(s) | 226 |
| Hin1II | CATG | 4 cut(s) | 263, 389, 397, 448 |
| HinfI | GANTC | 3 cut(s) | 5, 332, 450 |
| Hpy166II | GTNNAC | 2 cut(s) | 57, 185 |
| Hpy188I | TCNGA | 1 cut(s) | 437 |
| Hpy188III | TCNNGA | 1 cut(s) | 201 |
| Hpy8I | GTNNAC | 2 cut(s) | 57, 185 |
| HpyAV | CCTTC | 2 cut(s) | 400, 414 |
| HpyCH4III | ACNGT | 1 cut(s) | 383 |
| HpyCH4V | TGCA | 2 cut(s) | 185, 208 |
| Hsp92II | CATG | 4 cut(s) | 263, 389, 397, 448 |
| Kzo9I | GATC | 2 cut(s) | 211, 351 |
| LpnPI | CCDG | 8 cut(s) | 57, 95, 120, 194, 214, 287, 321, 402 |
| LweI | GCATC | 2 cut(s) | 81, 261 |
| MaeIII | GTNAC | 3 cut(s) | 67, 154, 412 |
| MalI | GATC | 2 cut(s) | 213, 353 |
| MboI | GATC | 2 cut(s) | 211, 351 |
| MboII | GAAGA | 2 cut(s) | 275, 389 |
| MfeI | CAATTG | 1 cut(s) | 188 |
| MhlI | GDGCHC | 2 cut(s) | 147, 187 |
| MluCI | AATT | 4 cut(s) | 85, 188, 235, 478 |
| MlyI | GAGTC | 1 cut(s) | 14 |
| MmeI | TCCRAC | 1 cut(s) | 87 |
| MnlI | CCTC | 5 cut(s) | 6, 19, 94, 122, 145 |
| MseI | TTAA | 1 cut(s) | 348 |
| MunI | CAATTG | 1 cut(s) | 188 |
| Mva1269I | GAATGC | 1 cut(s) | 129 |
| NdeII | GATC | 2 cut(s) | 211, 351 |
| NlaIII | CATG | 4 cut(s) | 263, 389, 397, 448 |
| NlaIV | GGNNCC | 1 cut(s) | 340 |
| NspV | TTCGAA | 1 cut(s) | 462 |
| PctI | GAATGC | 1 cut(s) | 129 |
| PfeI | GAWTC | 2 cut(s) | 332, 450 |
| PkrI | GCNGC | 1 cut(s) | 485 |
| PleI | GAGTC | 1 cut(s) | 13 |
| PpsI | GAGTC | 1 cut(s) | 13 |
| PspN4I | GGNNCC | 1 cut(s) | 340 |
| PstNI | CAGNNNCTG | 1 cut(s) | 335 |
| RsaI | GTAC | 1 cut(s) | 403 |
| RsaNI | GTAC | 1 cut(s) | 402 |
| SaqAI | TTAA | 1 cut(s) | 348 |
| SatI | GCNGC | 1 cut(s) | 484 |
| Sau3AI | GATC | 2 cut(s) | 211, 351 |
| SchI | GAGTC | 1 cut(s) | 14 |
| SduI | GDGCHC | 2 cut(s) | 147, 187 |
| SetI | ASST | 3 cut(s) | 133, 156, 234 |
| SfaNI | GCATC | 2 cut(s) | 81, 261 |
| SfcI | CTRYAG | 1 cut(s) | 220 |
| SfuI | TTCGAA | 1 cut(s) | 462 |
| Sse9I | AATT | 4 cut(s) | 85, 188, 235, 478 |
| SsiI | CCGC | 1 cut(s) | 483 |
| TaaI | ACNGT | 1 cut(s) | 383 |
| TaqI | TCGA | 3 cut(s) | 89, 147, 462 |
| TasI | AATT | 4 cut(s) | 85, 188, 235, 478 |
| TauI | GCSGC | 1 cut(s) | 486 |
| TfiI | GAWTC | 2 cut(s) | 332, 450 |
| Tru1I | TTAA | 1 cut(s) | 348 |
| Tru9I | TTAA | 1 cut(s) | 348 |
| TspDTI | ATGAA | 2 cut(s) | 276, 382 |
| VneI | GTGCAC | 1 cut(s) | 183 |
| XapI | RAATTY | 2 cut(s) | 85, 235 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 464 |