Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0009816

Physical Location & Seq

Genomic Coordinates Forward (+)

9008237 .. 9010117

Gene Structure 1881 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g15820.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGGAGGCCAAGACGGCGGAAGCTAGCTCAGTGAAGAAGAGGAAGCAGCTACAGGTCGATGATATTGCACAGTTGGTCAAGACCAAACTTGTTCAGCTCAACAAGAAGCCGAGACGTCGACATGTTGTAACTGTAACCAAAATAGGAGAGGGAAGACAGTGTAATGATGCTACTGTACGTCAAACGCAGGAGGATGATATTCATGATGACGCGGTTTGCGCCAGCCCTAGGAGCTCAGGCTCCGATCACGTCGACGACGGGACCTCTTGTTGCTCAAGTAACGGCTCGAGTGAGCTAGTGGAAGATGGAGAAAACAACCTCAAATTCGTAGATCTGAAGGATGACGGTGATGATGATGAGGGTGACGAAGTTGAATCGCAGACGTATAATCCACTCAGAGAAAGGAGACAGATGGCGCCTTCGAACAACCTTCAACCTCAACCAACGCCGGCGGAGCCTCGGCGAGGATCGGCGGCAGAGAAAATGCCTTCGGAATTGGAGCTGGAAGAGTTCTTCACGGCCGCCGAGAAAGACATCCAAAGTAAATTTTCAAAGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CDI

Protein Analysis

187

Amino Acids

20.66

Weight (kDa)

4.97

Isoelectric Point (pI)

59.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009816)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23430
fragaria_vesca	FvH4_1g15820 FvH4_1g15820 FvH4_1g15820
malus_domestica	MD00G1044500.v1.1 MD02G1170300.v1.1
prunus_persica	Prupe.7G135000_v2.0.a1 Prupe.7G135000_v2.0.a1
pyrus_communis	pycom15g24530
rosa_chinensis	RchiOBHm_Chr2g0105111
rosa_laevigata	RLG00000017404
rosa_multiflora	Rmu_sc0006734.1_g000001 Rmu_sc0023500.1_g000001
rosa_roxburghii	Rroxscaffold_2G00131630 Rroxscaffold_2G00138410
rosa_rugosa	Rorug02G0126300
rosa_samantha	Rh2AG177200 Rh2BG185200 Rh2CG181600 Rh2DG183300
rosa_wichuraiana	Rw2G013900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	118
AccB1I	GGYRCC	1 cut(s)	415
AccI	GTMKAC	2 cut(s)	118, 252
AccII	CGCG	1 cut(s)	212
AciI	CCGC	5 cut(s)	17, 212, 452, 473, 522
AclWI	GGATC	1 cut(s)	475
AcoI	YGGCCR	1 cut(s)	519
AcsI	RAATTY	2 cut(s)	323, 545
AcuI	CTGAAG	1 cut(s)	356
AcyI	GRCGYC	2 cut(s)	115, 416
AfaI	GTAC	1 cut(s)	177
AfiI	CCNNNNNNNGG	2 cut(s)	228, 464
AflIII	ACRYGT	1 cut(s)	121
AgsI	TTSAA	3 cut(s)	374, 434, 552
AjiI	CACGTC	1 cut(s)	250
AluBI	AGCT	7 cut(s)	23, 27, 49, 97, 234, 295, 502
AluI	AGCT	7 cut(s)	23, 27, 49, 97, 234, 295, 502
Alw21I	GWGCWC	1 cut(s)	236
Alw26I	GTCTC	2 cut(s)	106, 400
AlwI	GGATC	1 cut(s)	475
Ama87I	CYCGRG	1 cut(s)	286
AoxI	GGCC	2 cut(s)	6, 519
ApeKI	GCWGC	1 cut(s)	46
ApoI	RAATTY	2 cut(s)	323, 545
AspA2I	CCTAGG	1 cut(s)	227
AspLEI	GCGC	2 cut(s)	221, 418
AspS9I	GGNCC	1 cut(s)	261
AsuHPI	GGTGA	2 cut(s)	359, 374
AsuII	TTCGAA	1 cut(s)	422
AsuNHI	GCTAGC	1 cut(s)	23
AvaI	CYCGRG	1 cut(s)	286
AvaII	GGWCC	1 cut(s)	261
AvrII	CCTAGG	1 cut(s)	227
BanI	GGYRCC	1 cut(s)	415
BanII	GRGCYC	1 cut(s)	236
BbsI	GAAGAC	1 cut(s)	160
Bbv12I	GWGCWC	1 cut(s)	236
BbvI	GCAGC	1 cut(s)	58
BccI	CCATC	2 cut(s)	299, 406
BceAI	ACGGC	3 cut(s)	30, 298, 534
BcgI	CGANNNNNNTGC	2 cut(s)	47, 81
BcoDI	GTCTC	2 cut(s)	106, 400
BfaI	CTAG	3 cut(s)	24, 228, 296
BfmI	CTRYAG	1 cut(s)	50
BfoI	RGCGCY	1 cut(s)	419
BglI	GCCNNNNNGGC	1 cut(s)	14
BglII	AGATCT	1 cut(s)	331
BisI	GCNGC	3 cut(s)	47, 474, 522
BlnI	CCTAGG	1 cut(s)	227
BlsI	GCNGC	3 cut(s)	48, 475, 523
Bme18I	GGWCC	1 cut(s)	261
BmeT110I	CYCGRG	1 cut(s)	286
BmgBI	CACGTC	1 cut(s)	250
BmgT120I	GGNCC	1 cut(s)	261
BmiI	GGNNCC	4 cut(s)	241, 262, 417, 456
BmsI	GCATC	1 cut(s)	157
BmtI	GCTAGC	1 cut(s)	27
BpiI	GAAGAC	1 cut(s)	160
Bpu10I	CCTNAGC	1 cut(s)	235
Bpu14I	TTCGAA	1 cut(s)	422
BpuEI	CTTGAG	1 cut(s)	259
BsaHI	GRCGYC	2 cut(s)	115, 416
BsaJI	CCNNGG	2 cut(s)	227, 458
Bsc4I	CCNNNNNNNGG	2 cut(s)	228, 464
Bse118I	RCCGGY	1 cut(s)	448
BseDI	CCNNGG	2 cut(s)	227, 458
BseGI	GGATG	3 cut(s)	199, 346, 534
BseLI	CCNNNNNNNGG	2 cut(s)	228, 464
BseMII	CTCAG	3 cut(s)	42, 249, 409
BseX3I	CGGCCG	1 cut(s)	519
BseXI	GCAGC	1 cut(s)	58
Bsh1236I	CGCG	1 cut(s)	212
Bsh1285I	CGRYCG	1 cut(s)	522
BshFI	GGCC	2 cut(s)	8, 521
BshNI	GGYRCC	1 cut(s)	415
BsiEI	CGRYCG	1 cut(s)	522
BsiHKAI	GWGCWC	1 cut(s)	236
BsiHKCI	CYCGRG	1 cut(s)	286
BsiSI	CCGG	1 cut(s)	449
BslFI	GGGAC	1 cut(s)	274
BslI	CCNNNNNNNGG	2 cut(s)	228, 464
BsmAI	GTCTC	2 cut(s)	106, 400
BsmBI	CGTCTC	1 cut(s)	106
BsmFI	GGGAC	1 cut(s)	274
BsnI	GGCC	2 cut(s)	8, 521
BsoBI	CYCGRG	1 cut(s)	286
Bsp119I	TTCGAA	1 cut(s)	422
Bsp1286I	GDGCHC	1 cut(s)	236
Bsp143I	GATC	3 cut(s)	244, 331, 467
BspACI	CCGC	5 cut(s)	17, 212, 452, 473, 522
BspANI	GGCC	2 cut(s)	8, 521
BspCNI	CTCAG	3 cut(s)	41, 248, 408
BspFNI	CGCG	1 cut(s)	212
BspHI	TCATGA	1 cut(s)	202
BspLI	GGNNCC	4 cut(s)	241, 262, 417, 456
BspOI	GCTAGC	1 cut(s)	27
BspPI	GGATC	1 cut(s)	475
BspT104I	TTCGAA	1 cut(s)	422
BspT107I	GGYRCC	1 cut(s)	415
BsrFI	RCCGGY	1 cut(s)	448
BssAI	RCCGGY	1 cut(s)	448
BssECI	CCNNGG	2 cut(s)	227, 458
BssMI	GATC	3 cut(s)	244, 331, 467
BssNI	GRCGYC	2 cut(s)	115, 416
BssT1I	CCWWGG	1 cut(s)	227
Bst4CI	ACNGT	5 cut(s)	72, 133, 159, 175, 347
Bst6I	CTCTTC	2 cut(s)	32, 501
BstACI	GRCGYC	2 cut(s)	115, 416
BstBI	TTCGAA	1 cut(s)	422
BstC8I	GCNNGC	3 cut(s)	25, 223, 450
BstDEI	CTNAG	3 cut(s)	28, 235, 395
BstENI	CCTNNNNNAGG	1 cut(s)	462
BstF5I	GGATG	3 cut(s)	199, 346, 534
BstFNI	CGCG	1 cut(s)	212
BstH2I	RGCGCY	1 cut(s)	419
BstHHI	GCGC	2 cut(s)	221, 418
BstKTI	GATC	3 cut(s)	247, 334, 470
BstMAI	GTCTC	2 cut(s)	106, 400
BstMBI	GATC	3 cut(s)	244, 331, 467
BstMCI	CGRYCG	1 cut(s)	522
BstMWI	GCNNNNNNNGC	4 cut(s)	14, 218, 231, 454
BstNSI	RCATGY	1 cut(s)	125
BstSFI	CTRYAG	1 cut(s)	50
BstUI	CGCG	1 cut(s)	212
BstV1I	GCAGC	1 cut(s)	58
BstV2I	GAAGAC	1 cut(s)	160
BstX2I	RGATCY	1 cut(s)	331
BstYI	RGATCY	1 cut(s)	331
BstZI	CGGCCG	1 cut(s)	519
BsuRI	GGCC	2 cut(s)	8, 521
BtrI	CACGTC	1 cut(s)	250
BtsCI	GGATG	3 cut(s)	199, 346, 534
BtsIMutI	CAGTG	2 cut(s)	36, 164
Cac8I	GCNNGC	3 cut(s)	25, 223, 450
CciI	TCATGA	1 cut(s)	202
CfoI	GCGC	2 cut(s)	221, 418
Cfr10I	RCCGGY	1 cut(s)	448
Cfr13I	GGNCC	1 cut(s)	261
CseI	GACGC	1 cut(s)	218
Csp6I	GTAC	1 cut(s)	176
CviAII	CATG	2 cut(s)	122, 203
CviQI	GTAC	1 cut(s)	176
DdeI	CTNAG	3 cut(s)	28, 235, 395
DinI	GGCGCC	1 cut(s)	417
DpnI	GATC	3 cut(s)	246, 333, 469
DpnII	GATC	3 cut(s)	244, 331, 467
EaeI	YGGCCR	1 cut(s)	519
EagI	CGGCCG	1 cut(s)	519
Eam1104I	CTCTTC	2 cut(s)	32, 501
EarI	CTCTTC	2 cut(s)	32, 501
EciI	GGCGGA	2 cut(s)	32, 467
Ecl136II	GAGCTC	1 cut(s)	234
EclXI	CGGCCG	1 cut(s)	519
Eco130I	CCWWGG	1 cut(s)	227
Eco24I	GRGCYC	1 cut(s)	236
Eco47I	GGWCC	1 cut(s)	261
Eco52I	CGGCCG	1 cut(s)	519
Eco53kI	GAGCTC	1 cut(s)	234
Eco57I	CTGAAG	1 cut(s)	356
Eco88I	CYCGRG	1 cut(s)	286
EcoICRI	GAGCTC	1 cut(s)	234
EcoNI	CCTNNNNNAGG	1 cut(s)	462
EcoO109I	RGGNCCY	1 cut(s)	261
EcoT14I	CCWWGG	1 cut(s)	227
EcoT38I	GRGCYC	1 cut(s)	236
EgeI	GGCGCC	1 cut(s)	417
EheI	GGCGCC	1 cut(s)	417
ErhI	CCWWGG	1 cut(s)	227
Esp3I	CGTCTC	1 cut(s)	106
FaeI	CATG	2 cut(s)	125, 206
FaiI	YATR	3 cut(s)	123, 204, 387
FaqI	GGGAC	1 cut(s)	274
FatI	CATG	2 cut(s)	121, 202
FblI	GTMKAC	2 cut(s)	118, 252
Fnu4HI	GCNGC	3 cut(s)	47, 474, 522
FokI	GGATG	3 cut(s)	206, 353, 521
FriOI	GRGCYC	1 cut(s)	236
Fsp4HI	GCNGC	3 cut(s)	47, 474, 522
FspBI	CTAG	3 cut(s)	24, 228, 296
GlaI	GCGC	2 cut(s)	220, 417
GluI	GCNGC	3 cut(s)	47, 474, 522
HaeII	RGCGCY	1 cut(s)	419
HaeIII	GGCC	2 cut(s)	8, 521
HapII	CCGG	1 cut(s)	449
HgaI	GACGC	1 cut(s)	218
HhaI	GCGC	2 cut(s)	221, 418
Hin1I	GRCGYC	2 cut(s)	115, 416
Hin1II	CATG	2 cut(s)	125, 206
Hin6I	GCGC	2 cut(s)	219, 416
HinP1I	GCGC	2 cut(s)	219, 416
HincII	GTYRAC	2 cut(s)	119, 253
HindII	GTYRAC	2 cut(s)	119, 253
HinfI	GANTC	1 cut(s)	374
HpaII	CCGG	1 cut(s)	449
HphI	GGTGA	2 cut(s)	359, 374
Hpy166II	GTNNAC	2 cut(s)	119, 253
Hpy188I	TCNGA	4 cut(s)	244, 336, 398, 493
Hpy188III	TCNNGA	2 cut(s)	79, 203
Hpy8I	GTNNAC	2 cut(s)	119, 253
Hpy99I	CGWCG	4 cut(s)	120, 254, 257, 260
HpyAV	CCTTC	4 cut(s)	331, 429, 440, 498
HpyCH4III	ACNGT	5 cut(s)	72, 133, 159, 175, 347
HpyCH4IV	ACGT	4 cut(s)	115, 178, 249, 383
HpyCH4V	TGCA	1 cut(s)	68
HpyF10VI	GCNNNNNNNGC	4 cut(s)	14, 218, 231, 454
HpyF3I	CTNAG	3 cut(s)	28, 235, 395
HpySE526I	ACGT	4 cut(s)	115, 178, 249, 383
Hsp92I	GRCGYC	2 cut(s)	115, 416
Hsp92II	CATG	2 cut(s)	125, 206
HspAI	GCGC	2 cut(s)	219, 416
KasI	GGCGCC	1 cut(s)	415
KroI	GCCGGC	1 cut(s)	448
KroNI	GCCGGC	1 cut(s)	450
Kzo9I	GATC	3 cut(s)	244, 331, 467
LmnI	GCTCC	4 cut(s)	231, 245, 454, 499
LpnPI	CCDG	6 cut(s)	38, 173, 222, 235, 462, 488
Lsp1109I	GCAGC	1 cut(s)	58
LweI	GCATC	1 cut(s)	157
MaeI	CTAG	3 cut(s)	24, 228, 296
MaeII	ACGT	4 cut(s)	115, 178, 249, 383
MaeIII	GTNAC	4 cut(s)	127, 133, 278, 362
MalI	GATC	3 cut(s)	246, 333, 469
MboI	GATC	3 cut(s)	244, 331, 467
MboII	GAAGA	6 cut(s)	46, 49, 165, 314, 505, 518
MflI	RGATCY	1 cut(s)	331
MhlI	GDGCHC	1 cut(s)	236
MluCI	AATT	3 cut(s)	323, 494, 545
Mly113I	GGCGCC	1 cut(s)	416
MnlI	CCTC	9 cut(s)	33, 142, 184, 274, 329, 352, 447, 458, 468
MreI	CGCCGGCG	1 cut(s)	448
MroNI	GCCGGC	1 cut(s)	448
MspI	CCGG	1 cut(s)	449
MvnI	CGCG	1 cut(s)	212
MwoI	GCNNNNNNNGC	4 cut(s)	14, 218, 231, 454
NaeI	GCCGGC	1 cut(s)	450
NarI	GGCGCC	1 cut(s)	416
NdeII	GATC	3 cut(s)	244, 331, 467
NgoMIV	GCCGGC	1 cut(s)	448
NheI	GCTAGC	1 cut(s)	23
NlaIII	CATG	2 cut(s)	125, 206
NlaIV	GGNNCC	4 cut(s)	241, 262, 417, 456
NmeAIII	GCCGAG	3 cut(s)	135, 439, 550
NmuCI	GTSAC	1 cut(s)	362
NspI	RCATGY	1 cut(s)	125
NspV	TTCGAA	1 cut(s)	422
PaeR7I	CTCGAG	1 cut(s)	286
PagI	TCATGA	1 cut(s)	202
PciI	ACATGT	1 cut(s)	121
PdiI	GCCGGC	1 cut(s)	450
PfeI	GAWTC	1 cut(s)	374
PkrI	GCNGC	3 cut(s)	48, 475, 523
PluTI	GGCGCC	1 cut(s)	419
PpuMI	RGGWCCY	1 cut(s)	261
PscI	ACATGT	1 cut(s)	121
Psp124BI	GAGCTC	1 cut(s)	236
Psp5II	RGGWCCY	1 cut(s)	261
PspN4I	GGNNCC	4 cut(s)	241, 262, 417, 456
PspPI	GGNCC	1 cut(s)	261
PspPPI	RGGWCCY	1 cut(s)	261
PspXI	VCTCGAGB	1 cut(s)	286
PsuI	RGATCY	1 cut(s)	331
RsaI	GTAC	1 cut(s)	177
RsaNI	GTAC	1 cut(s)	176
SacI	GAGCTC	1 cut(s)	236
SalI	GTCGAC	2 cut(s)	117, 251
SatI	GCNGC	3 cut(s)	47, 474, 522
Sau3AI	GATC	3 cut(s)	244, 331, 467
Sau96I	GGNCC	1 cut(s)	261
SduI	GDGCHC	1 cut(s)	236
SfaNI	GCATC	1 cut(s)	157
SfcI	CTRYAG	1 cut(s)	50
SfoI	GGCGCC	1 cut(s)	417
Sfr274I	CTCGAG	1 cut(s)	286
SfuI	TTCGAA	1 cut(s)	422
SgrAI	CRCCGGYG	1 cut(s)	448
SgrDI	CGTCGACG	1 cut(s)	251
SinI	GGWCC	1 cut(s)	261
SlaI	CTCGAG	1 cut(s)	286
SmlI	CTYRAG	2 cut(s)	274, 286
SmoI	CTYRAG	2 cut(s)	274, 286
Sse9I	AATT	3 cut(s)	323, 494, 545
SsiI	CCGC	5 cut(s)	17, 212, 452, 473, 522
SspDI	GGCGCC	1 cut(s)	415
SspMI	CTAG	3 cut(s)	24, 228, 296
SstI	GAGCTC	1 cut(s)	236
StyI	CCWWGG	1 cut(s)	227
TaaI	ACNGT	5 cut(s)	72, 133, 159, 175, 347
TaiI	ACGT	4 cut(s)	118, 181, 252, 386
TaqI	TCGA	5 cut(s)	57, 118, 252, 287, 422
TasI	AATT	3 cut(s)	323, 494, 545
TauI	GCSGC	2 cut(s)	476, 524
TfiI	GAWTC	1 cut(s)	374
TscAI	CASTG	2 cut(s)	36, 164
TseFI	GTSAC	1 cut(s)	362
TseI	GCWGC	1 cut(s)	46
Tsp45I	GTSAC	1 cut(s)	362
TspDTI	ATGAA	1 cut(s)	191
TspRI	CASTG	2 cut(s)	36, 164
VpaK11BI	GGWCC	1 cut(s)	261
XagI	CCTNNNNNAGG	1 cut(s)	462
XapI	RAATTY	2 cut(s)	323, 545
XceI	RCATGY	1 cut(s)	125
XhoI	CTCGAG	1 cut(s)	286
XmaJI	CCTAGG	1 cut(s)	227
XmiI	GTMKAC	2 cut(s)	118, 252
XspI	CTAG	3 cut(s)	24, 228, 296
ZraI	GACGTC	1 cut(s)	116

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.