Rh2BG185200

Cyclin-dependent kinase inhibitor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0009816
Physical Location & Seq
Forward (+)
16501693 .. 16502777
1085 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG185200.1

Sequence Viewer

Length: 609 bp
ATGGAGGCCAAGACGGCGGAAACCAGCTCAGTCAAGAAGAGGAAGGTGGAAGTTGCACAGTTGGTCAAATCCAAACTCGTTCACCTCGACAAGAAGCCGAGACCTAGTGTTGAAACTATATCGAAAGTAGCAGAGGGAAGAGAGTGTACTGATGTTGCTACTGTTCGGGAACCAGAGGAGGAAGATGATGACGCCGTTTGCGCCAGCCCTAGGAGCTCAGGCTCCGATGATCACGTCGACGACACCTCCTGTTGCTCGAGTAACGGCTCGAGTGAGCTGGTGGAAGATGAACATAACCTCAAATTCGTAGATCTGGTGGAGGATGACGGTGATGATGTTGAGAGTGACGAAGTTGAATCGCGGACGTATAATCCACTCAGAGAAAGGAGACAGATGACGCCATCTAGCAACATTCAACCTCAACCAACGCCAGCGGAACCTCGGCGGGGTTCCACGGCAGAGAAAATGCCTACAGAATTGGAGCTGGAAGAATTCTTCACGTCGGCCGAGAAAGACATCCAACATAAATTTTCACAGAAATATAACTACGATCTAACGAAGGACGAGCCGTTGGAAGGACGTTACGAATGGACTCGATTAAAGCCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CDI

Protein Analysis

202

Amino Acids

22.87

Weight (kDa)

4.67

Isoelectric Point (pI)

56.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CDI PF02234 155 - 200 2.6e-16 Cyclin-dependent kinase inhibitor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 237
AccII CGCG 1 cut(s) 361
AciI CCGC 4 cut(s) 17, 361, 434, 445
AcoI YGGCCR 1 cut(s) 504
AcsI RAATTY 3 cut(s) 302, 491, 527
AcyI GRCGYC 2 cut(s) 192, 398
AfaI GTAC 1 cut(s) 148
AfiI CCNNNNNNNGG 3 cut(s) 210, 446, 575
AgsI TTSAA 3 cut(s) 113, 356, 416
AjiI CACGTC 2 cut(s) 235, 501
AluBI AGCT 4 cut(s) 27, 216, 277, 484
AluI AGCT 4 cut(s) 27, 216, 277, 484
Alw21I GWGCWC 1 cut(s) 218
Alw26I GTCTC 2 cut(s) 94, 382
Ama87I CYCGRG 2 cut(s) 256, 268
AoxI GGCC 2 cut(s) 6, 504
ApoI RAATTY 3 cut(s) 302, 491, 527
AspA2I CCTAGG 1 cut(s) 209
AspLEI GCGC 1 cut(s) 203
AsuHPI GGTGA 2 cut(s) 74, 341
AvaI CYCGRG 2 cut(s) 256, 268
AvrII CCTAGG 1 cut(s) 209
BanII GRGCYC 1 cut(s) 218
BarI GAAGNNNNNNTAC 2 cut(s) 130, 162
Bbv12I GWGCWC 1 cut(s) 218
BccI CCATC 1 cut(s) 409
BceAI ACGGC 5 cut(s) 30, 179, 280, 471, 553
BclI TGATCA 1 cut(s) 229
BcoDI GTCTC 2 cut(s) 94, 382
BfaI CTAG 3 cut(s) 105, 210, 405
BfmI CTRYAG 1 cut(s) 471
BglI GCCNNNNNGGC 1 cut(s) 14
BglII AGATCT 1 cut(s) 310
BlnI CCTAGG 1 cut(s) 209
BmeT110I CYCGRG 2 cut(s) 256, 268
BmgBI CACGTC 2 cut(s) 235, 501
BmiI GGNNCC 4 cut(s) 171, 223, 438, 451
Bpu10I CCTNAGC 1 cut(s) 217
BsaHI GRCGYC 2 cut(s) 192, 398
BsaI GGTCTC 1 cut(s) 94
BsaJI CCNNGG 3 cut(s) 209, 440, 453
BsaXI ACNNNNNCTCC 2 cut(s) 230, 260
Bsc4I CCNNNNNNNGG 3 cut(s) 210, 446, 575
BseDI CCNNGG 3 cut(s) 209, 440, 453
BseGI GGATG 2 cut(s) 328, 516
BseLI CCNNNNNNNGG 3 cut(s) 210, 446, 575
BseMII CTCAG 3 cut(s) 42, 231, 391
BseRI GAGGAG 1 cut(s) 191
BseX3I CGGCCG 1 cut(s) 504
Bsh1236I CGCG 1 cut(s) 361
Bsh1285I CGRYCG 1 cut(s) 507
BshFI GGCC 2 cut(s) 8, 506
BsiEI CGRYCG 1 cut(s) 507
BsiHKAI GWGCWC 1 cut(s) 218
BsiHKCI CYCGRG 2 cut(s) 256, 268
BslI CCNNNNNNNGG 3 cut(s) 210, 446, 575
BsmAI GTCTC 2 cut(s) 94, 382
BsnI GGCC 2 cut(s) 8, 506
Bso31I GGTCTC 1 cut(s) 94
BsoBI CYCGRG 2 cut(s) 256, 268
Bsp1286I GDGCHC 1 cut(s) 218
Bsp143I GATC 3 cut(s) 229, 310, 550
BspACI CCGC 4 cut(s) 17, 361, 434, 445
BspANI GGCC 2 cut(s) 8, 506
BspCNI CTCAG 3 cut(s) 41, 230, 390
BspFNI CGCG 1 cut(s) 361
BspLI GGNNCC 4 cut(s) 171, 223, 438, 451
BspTNI GGTCTC 1 cut(s) 94
BssECI CCNNGG 3 cut(s) 209, 440, 453
BssMI GATC 3 cut(s) 229, 310, 550
BssNI GRCGYC 2 cut(s) 192, 398
BssT1I CCWWGG 1 cut(s) 209
Bst4CI ACNGT 3 cut(s) 60, 163, 329
Bst6I CTCTTC 2 cut(s) 32, 133
BstACI GRCGYC 2 cut(s) 192, 398
BstC8I GCNNGC 2 cut(s) 205, 432
BstDEI CTNAG 3 cut(s) 28, 217, 377
BstDSI CCRYGG 1 cut(s) 453
BstF5I GGATG 2 cut(s) 328, 516
BstFNI CGCG 1 cut(s) 361
BstHHI GCGC 1 cut(s) 203
BstKTI GATC 3 cut(s) 232, 313, 553
BstMAI GTCTC 2 cut(s) 94, 382
BstMBI GATC 3 cut(s) 229, 310, 550
BstMCI CGRYCG 1 cut(s) 507
BstMWI GCNNNNNNNGC 3 cut(s) 14, 200, 213
BstSFI CTRYAG 1 cut(s) 471
BstUI CGCG 1 cut(s) 361
BstX2I RGATCY 1 cut(s) 310
BstYI RGATCY 1 cut(s) 310
BstZI CGGCCG 1 cut(s) 504
BsuRI GGCC 2 cut(s) 8, 506
BtgI CCRYGG 1 cut(s) 453
BtrI CACGTC 2 cut(s) 235, 501
BtsCI GGATG 2 cut(s) 328, 516
Cac8I GCNNGC 2 cut(s) 205, 432
CfoI GCGC 1 cut(s) 203
CseI GACGC 2 cut(s) 200, 406
Csp6I GTAC 1 cut(s) 147
CviQI GTAC 1 cut(s) 147
DdeI CTNAG 3 cut(s) 28, 217, 377
DpnI GATC 3 cut(s) 231, 312, 552
DpnII GATC 3 cut(s) 229, 310, 550
EaeI YGGCCR 1 cut(s) 504
EagI CGGCCG 1 cut(s) 504
Eam1104I CTCTTC 2 cut(s) 32, 133
EarI CTCTTC 2 cut(s) 32, 133
EciI GGCGGA 1 cut(s) 32
Ecl136II GAGCTC 1 cut(s) 216
EclXI CGGCCG 1 cut(s) 504
Eco130I CCWWGG 1 cut(s) 209
Eco24I GRGCYC 1 cut(s) 218
Eco31I GGTCTC 1 cut(s) 94
Eco52I CGGCCG 1 cut(s) 504
Eco53kI GAGCTC 1 cut(s) 216
Eco88I CYCGRG 2 cut(s) 256, 268
EcoICRI GAGCTC 1 cut(s) 216
EcoRI GAATTC 1 cut(s) 491
EcoT14I CCWWGG 1 cut(s) 209
EcoT38I GRGCYC 1 cut(s) 218
ErhI CCWWGG 1 cut(s) 209
FaiI YATR 6 cut(s) 119, 294, 369, 525, 543, 607
FauI CCCGC 1 cut(s) 438
FbaI TGATCA 1 cut(s) 229
FblI GTMKAC 1 cut(s) 237
FokI GGATG 2 cut(s) 335, 503
FriOI GRGCYC 1 cut(s) 218
FspBI CTAG 3 cut(s) 105, 210, 405
GlaI GCGC 1 cut(s) 202
HaeIII GGCC 2 cut(s) 8, 506
HgaI GACGC 2 cut(s) 200, 406
HhaI GCGC 1 cut(s) 203
Hin1I GRCGYC 2 cut(s) 192, 398
Hin6I GCGC 1 cut(s) 201
HinP1I GCGC 1 cut(s) 201
HincII GTYRAC 1 cut(s) 238
HindII GTYRAC 1 cut(s) 238
HinfI GANTC 2 cut(s) 356, 592
HphI GGTGA 2 cut(s) 74, 341
Hpy166II GTNNAC 3 cut(s) 82, 147, 238
Hpy188I TCNGA 2 cut(s) 226, 380
Hpy188III TCNNGA 2 cut(s) 34, 167
Hpy8I GTNNAC 3 cut(s) 82, 147, 238
Hpy99I CGWCG 3 cut(s) 239, 242, 505
HpyAV CCTTC 3 cut(s) 37, 553, 569
HpyCH4III ACNGT 3 cut(s) 60, 163, 329
HpyCH4IV ACGT 4 cut(s) 234, 365, 500, 580
HpyCH4V TGCA 1 cut(s) 56
HpyF10VI GCNNNNNNNGC 3 cut(s) 14, 200, 213
HpyF3I CTNAG 3 cut(s) 28, 217, 377
HpySE526I ACGT 4 cut(s) 234, 365, 500, 580
Hsp92I GRCGYC 2 cut(s) 192, 398
HspAI GCGC 1 cut(s) 201
Ksp22I TGATCA 1 cut(s) 229
Kzo9I GATC 3 cut(s) 229, 310, 550
LmnI GCTCC 3 cut(s) 213, 227, 481
LpnPI CCDG 9 cut(s) 37, 186, 204, 217, 262, 263, 299, 444, 470
MaeI CTAG 3 cut(s) 105, 210, 405
MaeII ACGT 4 cut(s) 234, 365, 500, 580
MaeIII GTNAC 3 cut(s) 260, 344, 581
MalI GATC 3 cut(s) 231, 312, 552
MboI GATC 3 cut(s) 229, 310, 550
MboII GAAGA 6 cut(s) 49, 150, 194, 296, 487, 500
MflI RGATCY 1 cut(s) 310
MhlI GDGCHC 1 cut(s) 218
MluCI AATT 4 cut(s) 302, 476, 491, 527
MlyI GAGTC 1 cut(s) 586
MmeI TCCRAC 2 cut(s) 544, 552
MseI TTAA 1 cut(s) 599
MspA1I CMGCKG 1 cut(s) 434
MvnI CGCG 1 cut(s) 361
MwoI GCNNNNNNNGC 3 cut(s) 14, 200, 213
NdeII GATC 3 cut(s) 229, 310, 550
NlaIV GGNNCC 4 cut(s) 171, 223, 438, 451
NmeAIII GCCGAG 3 cut(s) 123, 421, 532
NmuCI GTSAC 1 cut(s) 344
PaeR7I CTCGAG 2 cut(s) 256, 268
PcsI WCGNNNNNNNCGW 1 cut(s) 84
PfeI GAWTC 1 cut(s) 356
PleI GAGTC 1 cut(s) 586
PpsI GAGTC 1 cut(s) 586
Psp124BI GAGCTC 1 cut(s) 218
PspN4I GGNNCC 4 cut(s) 171, 223, 438, 451
PspXI VCTCGAGB 2 cut(s) 256, 268
PsuI RGATCY 1 cut(s) 310
RsaI GTAC 1 cut(s) 148
RsaNI GTAC 1 cut(s) 147
SacI GAGCTC 1 cut(s) 218
SalI GTCGAC 1 cut(s) 236
SaqAI TTAA 1 cut(s) 599
Sau3AI GATC 3 cut(s) 229, 310, 550
SchI GAGTC 1 cut(s) 586
SduI GDGCHC 1 cut(s) 218
SfcI CTRYAG 1 cut(s) 471
Sfr274I CTCGAG 2 cut(s) 256, 268
SgrDI CGTCGACG 1 cut(s) 236
SlaI CTCGAG 2 cut(s) 256, 268
SmlI CTYRAG 2 cut(s) 256, 268
SmoI CTYRAG 2 cut(s) 256, 268
Sse9I AATT 4 cut(s) 302, 476, 491, 527
SsiI CCGC 4 cut(s) 17, 361, 434, 445
SspMI CTAG 3 cut(s) 105, 210, 405
SstI GAGCTC 1 cut(s) 218
StyI CCWWGG 1 cut(s) 209
TaaI ACNGT 3 cut(s) 60, 163, 329
TaiI ACGT 4 cut(s) 237, 368, 503, 583
TaqI TCGA 6 cut(s) 87, 122, 237, 257, 269, 595
TasI AATT 4 cut(s) 302, 476, 491, 527
TatI WGTACW 1 cut(s) 146
TfiI GAWTC 1 cut(s) 356
Tru1I TTAA 1 cut(s) 599
Tru9I TTAA 1 cut(s) 599
TseFI GTSAC 1 cut(s) 344
Tsp45I GTSAC 1 cut(s) 344
TspDTI ATGAA 1 cut(s) 303
XapI RAATTY 3 cut(s) 302, 491, 527
XhoI CTCGAG 2 cut(s) 256, 268
XmaJI CCTAGG 1 cut(s) 209
XmiI GTMKAC 1 cut(s) 237
XspI CTAG 3 cut(s) 105, 210, 405
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.