Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0006508

Physical Location & Seq

Genomic Coordinates Reverse (-)

10881666 .. 10885484

Gene Structure 3819 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0126300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGGCCGAAGGAAGAGAAGGGGATTGGGAATGCGGTGGATGCAGAAACCGAAACTACGCCTTCAGATCCTTCTGCAATCGCTGCCGCCAGCCTCGTCTCCTCGTCGACACCAAAACCCCCGCAGACTCCAAATGGCTCCCCCGTATCGGCGATTGGATCTGCACCGGTTGCACTAACAACAATTATGCATCAAGAGAGAAGTGCAAAAAGTGCGGACAAAATAAGGAGTTAGCGGCAATGCCGGCCATTGCAATGCCCGGAACTTCTCTCCCGGCTTATTCAAATTATTTGGGCCGAGGCCAAGGAGGATTGGATCCAAAGATGAGTTTTGGAGTGATGGGGAATGGTCCTCCACACCAGCCGTTTCCTCTGAACTCGAACTGGCCAGGGGTTGATAAGTATGGAGTCCAGCCGGGTTCTGCTTTGCCCGTAGGTGGAATCCATAATGCTGGACTTCCGTATGCAAACCCTGGTAATGAGATTCCGAAAGGATTTCGCTCTGGTGACTGGATATGTAGCTGTGGTTTTCATAATTACCAGTCTCGTACCCAGTGCAAAAAGTGCAATGCCTTTCCTCCAGCTCTTGGAATCAAACGGTTAGCATCTGAAGAGTTTGTTAACGACTGGGATAACAAGAGATTGAACTTGGGACATGCAATTGGGCAGCAGCAATCTTATCCTGGGTTTGAGGTGGTAGGGGCCAGGGGTCACCCCATAGCTGGACCTTATGGTCATTATCCTGGTCTGAGCTCAGTTGGGACTCCAAATTTGCAAGTCCCCATGCCATTAACACAGCATGCAACGACACCTACACTCTTTGGGAAAGGAGCAAAGCAATGGCGTAATGGGGATTGGATGTGCACAAATTGCGACAATCACAATTATGCATCTCGATTAAGTTGCAATAGATGCAAGACCGAAAGAGATGCAGCTGCTCAGCCAGTCAATGTCATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0019538 GO:0031365 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071704 GO:0097305 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M24

Protein Analysis

318

Amino Acids

34.77

Weight (kDa)

9.1

Isoelectric Point (pI)

54.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_RanBP	PF00641	281 - 308	2.8e-06	Zn-finger in Ran binding protein and others

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006508)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25740 AT3G25740 AT4G37040
fragaria_vesca	FvH4_1g15810 FvH4_1g15810 FvH4_1g15810 FvH4_1g15810 FvH4_1g15810 FvH4_1g15810
malus_domestica	MD00G1045000.v1.1 MD02G1169900.v1.1
prunus_persica	Prupe.7G135200_v2.0.a1 Prupe.7G135300_v2.0.a1
pyrus_communis	pycom02g13680
rosa_chinensis	RchiOBHm_Chr2g0105091 RchiOBHm_Chr5g0066781
rosa_laevigata	RLG00000017402
rosa_multiflora	Rmu_sc0005160.1_g000008
rosa_roxburghii	Rroxscaffold_2G00138430
rosa_rugosa	Rorug02G0126300
rosa_samantha	Rh2AG177000 Rh2AG177100 Rh2BG185100 Rh2CG181400 Rh2DG183200
rosa_wichuraiana	Rw2G013890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	729
AccB7I	CCANNNNNTGG	1 cut(s)	584
AccI	GTMKAC	1 cut(s)	105
AciI	CCGC	5 cut(s)	33, 85, 120, 213, 233
AclWI	GGATC	4 cut(s)	60, 164, 308, 321
AcoI	YGGCCR	3 cut(s)	3, 243, 383
AcsI	RAATTY	1 cut(s)	766
AcuI	CTGAAG	2 cut(s)	46, 627
AfaI	GTAC	1 cut(s)	547
AfiI	CCNNNNNNNGG	4 cut(s)	146, 434, 584, 719
AgeI	ACCGGT	1 cut(s)	164
AgsI	TTSAA	2 cut(s)	282, 643
AjnI	CCWGG	5 cut(s)	385, 469, 679, 701, 739
AluBI	AGCT	5 cut(s)	519, 581, 719, 750, 932
AluI	AGCT	5 cut(s)	519, 581, 719, 750, 932
Alw21I	GWGCWC	2 cut(s)	752, 863
Alw26I	GTCTC	2 cut(s)	101, 546
Alw44I	GTGCAC	1 cut(s)	859
AlwI	GGATC	4 cut(s)	60, 164, 308, 321
AoxI	GGCC	6 cut(s)	3, 243, 292, 298, 383, 699
ApaLI	GTGCAC	1 cut(s)	859
ApeKI	GCWGC	5 cut(s)	81, 664, 667, 929, 932
ApoI	RAATTY	1 cut(s)	766
ArsI	GACNNNNNNTTYG	2 cut(s)	751, 783
AsiGI	ACCGGT	1 cut(s)	164
AspS9I	GGNCC	4 cut(s)	292, 347, 699, 722
AsuC2I	CCSGG	3 cut(s)	258, 272, 414
AsuHPI	GGTGA	2 cut(s)	515, 701
AvaII	GGWCC	2 cut(s)	347, 722
BaeGI	GKGCMC	1 cut(s)	863
BalI	TGGCCA	1 cut(s)	385
BamHI	GGATCC	1 cut(s)	313
BanII	GRGCYC	1 cut(s)	752
Bbv12I	GWGCWC	2 cut(s)	752, 863
BbvI	GCAGC	5 cut(s)	68, 676, 679, 919, 941
BccI	CCATC	1 cut(s)	331
BceAI	ACGGC	1 cut(s)	346
BcgI	CGANNNNNNTGC	4 cut(s)	882, 908, 916, 942
BciT130I	CCWGG	5 cut(s)	387, 471, 681, 703, 741
BcnI	CCSGG	3 cut(s)	258, 272, 414
BcoDI	GTCTC	2 cut(s)	101, 546
BisI	GCNGC	7 cut(s)	82, 85, 234, 665, 668, 930, 933
BlpI	GCTNAGC	1 cut(s)	936
BlsI	GCNGC	7 cut(s)	83, 86, 235, 666, 669, 931, 934
Bme1390I	CCNGG	8 cut(s)	258, 272, 387, 414, 471, 681, 703, 741
Bme18I	GGWCC	2 cut(s)	347, 722
BmgT120I	GGNCC	4 cut(s)	292, 347, 699, 722
BmiI	GGNNCC	3 cut(s)	137, 315, 700
BmrFI	CCNGG	8 cut(s)	258, 272, 387, 414, 471, 681, 703, 741
BmrI	ACTGGG	2 cut(s)	544, 634
BmsI	GCATC	6 cut(s)	29, 197, 611, 896, 899, 916
BmuI	ACTGGG	2 cut(s)	544, 634
BpmI	CTGGAG	1 cut(s)	561
Bpu1102I	GCTNAGC	1 cut(s)	936
BpuMI	CCSGG	3 cut(s)	258, 272, 414
BsaJI	CCNNGG	6 cut(s)	295, 301, 386, 469, 680, 702
BsaWI	WCCGGW	1 cut(s)	164
Bsc4I	CCNNNNNNNGG	4 cut(s)	146, 434, 584, 719
Bse118I	RCCGGY	2 cut(s)	164, 241
Bse1I	ACTGG	6 cut(s)	386, 512, 538, 550, 629, 941
Bse3DI	GCAATG	5 cut(s)	243, 246, 258, 571, 842
BseBI	CCWGG	5 cut(s)	387, 471, 681, 703, 741
BseDI	CCNNGG	6 cut(s)	295, 301, 386, 469, 680, 702
BseGI	GGATG	2 cut(s)	44, 861
BseLI	CCNNNNNNNGG	4 cut(s)	146, 434, 584, 719
BseMI	GCAATG	5 cut(s)	243, 246, 258, 571, 842
BseMII	CTCAG	3 cut(s)	737, 765, 950
BseNI	ACTGG	6 cut(s)	386, 512, 538, 550, 629, 941
BseRI	GAGGAG	1 cut(s)	89
BseSI	GKGCMC	1 cut(s)	863
BseXI	GCAGC	5 cut(s)	68, 676, 679, 919, 941
BsgI	GTGCAG	1 cut(s)	145
BshFI	GGCC	6 cut(s)	5, 245, 294, 300, 385, 701
BshTI	ACCGGT	1 cut(s)	164
BsiHKAI	GWGCWC	2 cut(s)	752, 863
BsiSI	CCGG	5 cut(s)	165, 242, 258, 272, 413
BslFI	GGGAC	3 cut(s)	663, 761, 772
BslI	CCNNNNNNNGG	4 cut(s)	146, 434, 584, 719
BsmAI	GTCTC	2 cut(s)	101, 546
BsmBI	CGTCTC	1 cut(s)	101
BsmFI	GGGAC	3 cut(s)	663, 761, 772
BsmI	GAATGC	1 cut(s)	35
BsnI	GGCC	6 cut(s)	5, 245, 294, 300, 385, 701
Bsp1286I	GDGCHC	2 cut(s)	752, 863
Bsp143I	GATC	3 cut(s)	65, 156, 313
Bsp1720I	GCTNAGC	1 cut(s)	936
BspACI	CCGC	5 cut(s)	33, 85, 120, 213, 233
BspANI	GGCC	6 cut(s)	5, 245, 294, 300, 385, 701
BspCNI	CTCAG	3 cut(s)	738, 764, 949
BspLI	GGNNCC	3 cut(s)	137, 315, 700
BspPI	GGATC	4 cut(s)	60, 164, 308, 321
BsrDI	GCAATG	5 cut(s)	243, 246, 258, 571, 842
BsrFI	RCCGGY	2 cut(s)	164, 241
BsrI	ACTGG	6 cut(s)	386, 512, 538, 550, 629, 941
BssAI	RCCGGY	2 cut(s)	164, 241
BssECI	CCNNGG	6 cut(s)	295, 301, 386, 469, 680, 702
BssMI	GATC	3 cut(s)	65, 156, 313
BssT1I	CCWWGG	1 cut(s)	301
Bst2UI	CCWGG	5 cut(s)	387, 471, 681, 703, 741
Bst4CI	ACNGT	1 cut(s)	597
Bst6I	CTCTTC	2 cut(s)	7, 603
BstAPI	GCANNNNNTGC	6 cut(s)	81, 168, 210, 561, 867, 909
BstC8I	GCNNGC	3 cut(s)	89, 243, 798
BstDEI	CTNAG	3 cut(s)	746, 751, 936
BstEII	GGTNACC	1 cut(s)	707
BstF5I	GGATG	2 cut(s)	44, 861
BstKTI	GATC	3 cut(s)	68, 159, 316
BstMAI	GTCTC	2 cut(s)	101, 546
BstMBI	GATC	3 cut(s)	65, 156, 313
BstMWI	GCNNNNNNNGC	8 cut(s)	39, 81, 168, 210, 242, 561, 867, 909
BstNI	CCWGG	5 cut(s)	387, 471, 681, 703, 741
BstNSI	RCATGY	2 cut(s)	656, 800
BstPI	GGTNACC	1 cut(s)	707
BstSCI	CCNGG	8 cut(s)	256, 270, 385, 412, 469, 679, 701, 739
BstSLI	GKGCMC	1 cut(s)	863
BstV1I	GCAGC	5 cut(s)	68, 676, 679, 919, 941
BstX2I	RGATCY	3 cut(s)	65, 156, 313
BstXI	CCANNNNNNTGG	1 cut(s)	449
BstYI	RGATCY	3 cut(s)	65, 156, 313
BsuRI	GGCC	6 cut(s)	5, 245, 294, 300, 385, 701
BtsCI	GGATG	2 cut(s)	44, 861
BtsIMutI	CAGTG	1 cut(s)	557
Cac8I	GCNNGC	3 cut(s)	89, 243, 798
Cfr10I	RCCGGY	2 cut(s)	164, 241
Cfr13I	GGNCC	4 cut(s)	292, 347, 699, 722
Csp6I	GTAC	1 cut(s)	546
CspAI	ACCGGT	1 cut(s)	164
CviAII	CATG	4 cut(s)	653, 781, 797, 952
CviQI	GTAC	1 cut(s)	546
DdeI	CTNAG	3 cut(s)	746, 751, 936
DpnI	GATC	3 cut(s)	67, 158, 315
DpnII	GATC	3 cut(s)	65, 156, 313
DrdI	GACNNNNNNGTC	1 cut(s)	729
DseDI	GACNNNNNNGTC	1 cut(s)	729
EaeI	YGGCCR	3 cut(s)	3, 243, 383
Eam1104I	CTCTTC	2 cut(s)	7, 603
EarI	CTCTTC	2 cut(s)	7, 603
Ecl136II	GAGCTC	1 cut(s)	750
Eco130I	CCWWGG	1 cut(s)	301
Eco24I	GRGCYC	1 cut(s)	752
Eco47I	GGWCC	2 cut(s)	347, 722
Eco53kI	GAGCTC	1 cut(s)	750
Eco57I	CTGAAG	2 cut(s)	46, 627
Eco91I	GGTNACC	1 cut(s)	707
EcoICRI	GAGCTC	1 cut(s)	750
EcoO65I	GGTNACC	1 cut(s)	707
EcoRII	CCWGG	5 cut(s)	385, 469, 679, 701, 739
EcoT14I	CCWWGG	1 cut(s)	301
EcoT22I	ATGCAT	2 cut(s)	190, 889
EcoT38I	GRGCYC	1 cut(s)	752
ErhI	CCWWGG	1 cut(s)	301
Esp3I	CGTCTC	1 cut(s)	101
FaeI	CATG	4 cut(s)	656, 784, 800, 955
FaqI	GGGAC	3 cut(s)	663, 761, 772
FatI	CATG	4 cut(s)	652, 780, 796, 951
FauI	CCCGC	1 cut(s)	127
FblI	GTMKAC	1 cut(s)	105
Fnu4HI	GCNGC	7 cut(s)	82, 85, 234, 665, 668, 930, 933
FokI	GGATG	2 cut(s)	51, 868
FriOI	GRGCYC	1 cut(s)	752
Fsp4HI	GCNGC	7 cut(s)	82, 85, 234, 665, 668, 930, 933
GluI	GCNGC	7 cut(s)	82, 85, 234, 665, 668, 930, 933
GsuI	CTGGAG	1 cut(s)	561
HaeIII	GGCC	6 cut(s)	5, 245, 294, 300, 385, 701
HapII	CCGG	5 cut(s)	165, 242, 258, 272, 413
Hin1II	CATG	4 cut(s)	656, 784, 800, 955
HincII	GTYRAC	2 cut(s)	106, 619
HindII	GTYRAC	2 cut(s)	106, 619
HinfI	GANTC	6 cut(s)	125, 405, 438, 481, 588, 760
HpaI	GTTAAC	1 cut(s)	619
HpaII	CCGG	5 cut(s)	165, 242, 258, 272, 413
HphI	GGTGA	2 cut(s)	515, 701
Hpy166II	GTNNAC	3 cut(s)	106, 619, 861
Hpy188I	TCNGA	5 cut(s)	65, 372, 486, 607, 747
Hpy188III	TCNNGA	2 cut(s)	192, 891
Hpy8I	GTNNAC	3 cut(s)	106, 619, 861
Hpy99I	CGWCG	1 cut(s)	107
HpyAV	CCTTC	3 cut(s)	11, 70, 79
HpyCH4III	ACNGT	1 cut(s)	597
HpyF10VI	GCNNNNNNNGC	8 cut(s)	39, 81, 168, 210, 242, 561, 867, 909
HpyF3I	CTNAG	3 cut(s)	746, 751, 936
Hsp92II	CATG	4 cut(s)	656, 784, 800, 955
KroI	GCCGGC	1 cut(s)	241
KroNI	GCCGGC	1 cut(s)	243
KspAI	GTTAAC	1 cut(s)	619
Kzo9I	GATC	3 cut(s)	65, 156, 313
LmnI	GCTCC	2 cut(s)	141, 827
Lsp1109I	GCAGC	5 cut(s)	68, 676, 679, 919, 941
LweI	GCATC	6 cut(s)	29, 197, 611, 896, 899, 916
MaeIII	GTNAC	2 cut(s)	503, 707
MalI	GATC	3 cut(s)	67, 158, 315
MboI	GATC	3 cut(s)	65, 156, 313
MboII	GAAGA	2 cut(s)	24, 620
MfeI	CAATTG	1 cut(s)	657
MflI	RGATCY	3 cut(s)	65, 156, 313
MhlI	GDGCHC	2 cut(s)	752, 863
MlsI	TGGCCA	1 cut(s)	385
MluCI	AATT	7 cut(s)	181, 283, 532, 657, 766, 865, 880
MluNI	TGGCCA	1 cut(s)	385
MlyI	GAGTC	3 cut(s)	119, 414, 754
MnlI	CCTC	8 cut(s)	102, 110, 290, 299, 360, 378, 585, 682
Mox20I	TGGCCA	1 cut(s)	385
Mph1103I	ATGCAT	2 cut(s)	190, 889
MroNI	GCCGGC	1 cut(s)	241
MscI	TGGCCA	1 cut(s)	385
MseI	TTAA	3 cut(s)	618, 788, 896
MslI	CAYNNNNRTG	2 cut(s)	251, 882
Msp20I	TGGCCA	1 cut(s)	385
MspA1I	CMGCKG	1 cut(s)	932
MspI	CCGG	5 cut(s)	165, 242, 258, 272, 413
MspR9I	CCNGG	8 cut(s)	258, 272, 387, 414, 471, 681, 703, 741
MunI	CAATTG	1 cut(s)	657
Mva1269I	GAATGC	1 cut(s)	35
MvaI	CCWGG	5 cut(s)	387, 471, 681, 703, 741
MwoI	GCNNNNNNNGC	8 cut(s)	39, 81, 168, 210, 242, 561, 867, 909
NaeI	GCCGGC	1 cut(s)	243
NciI	CCSGG	3 cut(s)	258, 272, 414
NdeII	GATC	3 cut(s)	65, 156, 313
NgoMIV	GCCGGC	1 cut(s)	241
NlaIII	CATG	4 cut(s)	656, 784, 800, 955
NlaIV	GGNNCC	3 cut(s)	137, 315, 700
NmeAIII	GCCGAG	1 cut(s)	320
NmuCI	GTSAC	2 cut(s)	503, 707
NsiI	ATGCAT	2 cut(s)	190, 889
NspI	RCATGY	2 cut(s)	656, 800
PaeI	GCATGC	1 cut(s)	800
PctI	GAATGC	1 cut(s)	35
PdiI	GCCGGC	1 cut(s)	243
PfeI	GAWTC	3 cut(s)	438, 481, 588
PflMI	CCANNNNNTGG	1 cut(s)	584
PinAI	ACCGGT	1 cut(s)	164
PkrI	GCNGC	7 cut(s)	83, 86, 235, 666, 669, 931, 934
PleI	GAGTC	3 cut(s)	119, 413, 754
PpsI	GAGTC	3 cut(s)	119, 413, 754
Psp124BI	GAGCTC	1 cut(s)	752
Psp6I	CCWGG	5 cut(s)	385, 469, 679, 701, 739
PspEI	GGTNACC	1 cut(s)	707
PspGI	CCWGG	5 cut(s)	385, 469, 679, 701, 739
PspN4I	GGNNCC	3 cut(s)	137, 315, 700
PspPI	GGNCC	4 cut(s)	292, 347, 699, 722
PsuI	RGATCY	3 cut(s)	65, 156, 313
PvuII	CAGCTG	1 cut(s)	932
RsaI	GTAC	1 cut(s)	547
RsaNI	GTAC	1 cut(s)	546
RseI	CAYNNNNRTG	2 cut(s)	251, 882
SacI	GAGCTC	1 cut(s)	752
SalI	GTCGAC	1 cut(s)	104
SaqAI	TTAA	3 cut(s)	618, 788, 896
SatI	GCNGC	7 cut(s)	82, 85, 234, 665, 668, 930, 933
Sau3AI	GATC	3 cut(s)	65, 156, 313
Sau96I	GGNCC	4 cut(s)	292, 347, 699, 722
SchI	GAGTC	3 cut(s)	119, 414, 754
ScrFI	CCNGG	8 cut(s)	258, 272, 387, 414, 471, 681, 703, 741
SduI	GDGCHC	2 cut(s)	752, 863
SetI	ASST	9 cut(s)	436, 521, 583, 693, 721, 727, 752, 811, 934
SfaNI	GCATC	6 cut(s)	29, 197, 611, 896, 899, 916
SinI	GGWCC	2 cut(s)	347, 722
SmiMI	CAYNNNNRTG	2 cut(s)	251, 882
SphI	GCATGC	1 cut(s)	800
Sse9I	AATT	7 cut(s)	181, 283, 532, 657, 766, 865, 880
SsiI	CCGC	5 cut(s)	33, 85, 120, 213, 233
SstI	GAGCTC	1 cut(s)	752
StyD4I	CCNGG	8 cut(s)	256, 270, 385, 412, 469, 679, 701, 739
StyI	CCWWGG	1 cut(s)	301
TaaI	ACNGT	1 cut(s)	597
TaqI	TCGA	3 cut(s)	105, 377, 892
TaqII	GACCGA	1 cut(s)	932
TasI	AATT	7 cut(s)	181, 283, 532, 657, 766, 865, 880
TauI	GCSGC	2 cut(s)	87, 236
TfiI	GAWTC	3 cut(s)	438, 481, 588
Tru1I	TTAA	3 cut(s)	618, 788, 896
Tru9I	TTAA	3 cut(s)	618, 788, 896
TscAI	CASTG	1 cut(s)	557
TseFI	GTSAC	2 cut(s)	503, 707
TseI	GCWGC	5 cut(s)	81, 664, 667, 929, 932
Tsp45I	GTSAC	2 cut(s)	503, 707
TspDTI	ATGAA	1 cut(s)	518
TspGWI	ACGGA	1 cut(s)	447
TspRI	CASTG	1 cut(s)	557
Van91I	CCANNNNNTGG	1 cut(s)	584
VneI	GTGCAC	1 cut(s)	859
VpaK11BI	GGWCC	2 cut(s)	347, 722
XapI	RAATTY	1 cut(s)	766
XceI	RCATGY	2 cut(s)	656, 800
XmiI	GTMKAC	1 cut(s)	105
Zsp2I	ATGCAT	2 cut(s)	190, 889

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.