Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0006508

Physical Location & Seq

Genomic Coordinates Reverse (-)

8992677 .. 9000286

Gene Structure 7610 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g15810.t5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGGTAAGCGCTAGTGCAATGCGTGTTGCGCAACCCGCAATCCTCTCCTCCTATGTGGGTACCCACTTGCTTCACTCCCCGCAGCCTCTTCACCACCTCTTCCGCTTCAACCCAGGAAGCAAGCATGTCTCCATGCAGTTATCGAGAGGATTTTCTGGACTGACCGACCTCTTGTTCAATGGGAGAAATGCAAATGAAGGTCTACATGCCAAACGAAAACGTCTAAGGCCTGGAAAAGTTTCACCTCGTCGCCCTGTTCCAGATCATATACCAAGGCCTCCTTATGTAAAATCTAAAAAACCGCCTGGAATTGCGAGTGGACCTGAAGTGCATGATGAGGAGGGGATAGAATGCATGAGAGCCTCCGGAAGGCTTGCGGCACAGGTTCTTGAATATGCTGGGACTTTGGTCAAGCCAGGCATAAAGACAGATGAAATTGACCAAGCTGTTCACCAAATGATAATTGATAACGGGGCCTACCCGTCACCACTTGGCTATGGTGGATTTCCAAAGAGCGTCTGCACATCAGTGAATGAATGCATTTGCCATGGAATTCCAGATTCACGAGAACTTGAGGATGGTGATATTATTAACATTGATGTTACAGTCTACTTAAATGGGTACCACGGCGATACATCAAAAACTTTCTTTTGCGGAGATGTTGATGATAGAGGCAAGAAGTTAGTTCAGGTAACTGAGGAATGCCTTGACAAAGCAATATCAATCTGTGCACCTGGAGTGGAGTTCAAGAAAATTGGTAGAACAATTCAAGAACATGCAGATAAACATCGTTATGGTGTTGTTCGACAGTTCGTTGGGCATGGTGTTGGACGCGTCTTTCATGCTGATCCAGTTGTTCTGCACTACAGAAACAATGATAGTGGACGCATGGTGTTAAATCAGACCTTCACAATAGAACCTATGTTAACAATTGGTAGCTATAATCCTGTAATGTGGGACGACGATTGGACAGTTGTTACAGAAGATGGAAGCTTATCAGCACAGTTTGAACATACTATCTTAATAACCAAGGATGGGGCTGAGATACTAACTCAGTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0019538 GO:0031365 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071704 GO:0097305 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M24

Protein Analysis

354

Amino Acids

38.88

Weight (kDa)

6.62

Isoelectric Point (pI)

37.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M24	PF00557	118 - 291	5.3e-45	Metallopeptidase family M24

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006508)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25740 AT3G25740 AT4G37040
fragaria_vesca	FvH4_1g15810 FvH4_1g15810 FvH4_1g15810 FvH4_1g15810 FvH4_1g15810 FvH4_1g15810
malus_domestica	MD00G1045000.v1.1 MD02G1169900.v1.1
prunus_persica	Prupe.7G135200_v2.0.a1 Prupe.7G135300_v2.0.a1
pyrus_communis	pycom02g13680
rosa_chinensis	RchiOBHm_Chr2g0105091 RchiOBHm_Chr5g0066781
rosa_laevigata	RLG00000017402
rosa_multiflora	Rmu_sc0005160.1_g000008
rosa_roxburghii	Rroxscaffold_2G00138430
rosa_rugosa	Rorug02G0126300
rosa_samantha	Rh2AG177000 Rh2AG177100 Rh2BG185100 Rh2CG181400 Rh2DG183200
rosa_wichuraiana	Rw2G013890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	30
Acc65I	GGTACC	2 cut(s)	59, 621
AccB1I	GGYRCC	2 cut(s)	59, 621
AccI	GTMKAC	2 cut(s)	202, 609
AccII	CGCG	1 cut(s)	834
AccIII	TCCGGA	1 cut(s)	365
AciI	CCGC	6 cut(s)	36, 80, 103, 302, 377, 654
AclWI	GGATC	1 cut(s)	842
AcsI	RAATTY	1 cut(s)	552
AcuI	CTGAAG	1 cut(s)	345
AfaI	GTAC	2 cut(s)	61, 623
AfeI	AGCGCT	1 cut(s)	10
AfiI	CCNNNNNNNGG	2 cut(s)	369, 1035
AflIII	ACRYGT	1 cut(s)	832
AgsI	TTSAA	6 cut(s)	109, 178, 392, 748, 770, 1010
AjnI	CCWGG	5 cut(s)	112, 229, 304, 415, 733
AleI	CACNNNNGTG	1 cut(s)	527
AluBI	AGCT	3 cut(s)	446, 939, 993
AluI	AGCT	3 cut(s)	446, 939, 993
Alw21I	GWGCWC	1 cut(s)	733
Alw26I	GTCTC	1 cut(s)	133
Alw44I	GTGCAC	1 cut(s)	729
AlwI	GGATC	1 cut(s)	842
Aor13HI	TCCGGA	1 cut(s)	365
Aor51HI	AGCGCT	1 cut(s)	10
AoxI	GGCC	3 cut(s)	227, 275, 474
ApaLI	GTGCAC	1 cut(s)	729
ApeKI	GCWGC	1 cut(s)	82
ApoI	RAATTY	1 cut(s)	552
Asp700I	GAANNNNTTC	1 cut(s)	238
Asp718I	GGTACC	2 cut(s)	59, 621
AspLEI	GCGC	2 cut(s)	11, 31
AspS9I	GGNCC	2 cut(s)	320, 474
AsuHPI	GGTGA	5 cut(s)	83, 234, 443, 477, 593
AvaII	GGWCC	1 cut(s)	320
BaeGI	GKGCMC	1 cut(s)	733
BanI	GGYRCC	2 cut(s)	59, 621
BauI	CACGAG	1 cut(s)	564
Bbv12I	GWGCWC	1 cut(s)	733
BbvI	GCAGC	1 cut(s)	94
BccI	CCATC	3 cut(s)	572, 980, 1028
BceAI	ACGGC	1 cut(s)	643
BciT130I	CCWGG	5 cut(s)	114, 231, 306, 417, 735
BcoDI	GTCTC	1 cut(s)	133
BfaI	CTAG	1 cut(s)	12
BfmI	CTRYAG	1 cut(s)	865
BfoI	RGCGCY	1 cut(s)	12
BisI	GCNGC	2 cut(s)	83, 378
BlsI	GCNGC	2 cut(s)	84, 379
Bme1390I	CCNGG	5 cut(s)	114, 231, 306, 417, 735
Bme18I	GGWCC	1 cut(s)	320
BmgT120I	GGNCC	2 cut(s)	320, 474
BmiI	GGNNCC	3 cut(s)	61, 475, 623
BmrFI	CCNGG	5 cut(s)	114, 231, 306, 417, 735
BoxI	GACNNNNGTC	1 cut(s)	407
BpmI	CTGGAG	1 cut(s)	756
BpuEI	CTTGAG	1 cut(s)	593
BsaBI	GATNNNNATC	1 cut(s)	786
BsaJI	CCNNGG	5 cut(s)	112, 272, 547, 625, 1029
BsaWI	WCCGGW	1 cut(s)	365
Bsc4I	CCNNNNNNNGG	2 cut(s)	369, 1035
Bse1I	ACTGG	1 cut(s)	851
Bse3DI	GCAATG	1 cut(s)	24
Bse8I	GATNNNNATC	1 cut(s)	786
BseAI	TCCGGA	1 cut(s)	365
BseBI	CCWGG	5 cut(s)	114, 231, 306, 417, 735
BseDI	CCNNGG	5 cut(s)	112, 272, 547, 625, 1029
BseGI	GGATG	2 cut(s)	583, 1039
BseJI	GATNNNNATC	1 cut(s)	786
BseLI	CCNNNNNNNGG	2 cut(s)	369, 1035
BseMI	GCAATG	1 cut(s)	24
BseMII	CTCAG	2 cut(s)	687, 1032
BseNI	ACTGG	1 cut(s)	851
BseRI	GAGGAG	2 cut(s)	37, 353
BseSI	GKGCMC	1 cut(s)	733
BseXI	GCAGC	1 cut(s)	94
BseYI	CCCAGC	1 cut(s)	398
BsgI	GTGCAG	2 cut(s)	505, 845
Bsh1236I	CGCG	1 cut(s)	834
BshFI	GGCC	3 cut(s)	229, 277, 476
BshNI	GGYRCC	2 cut(s)	59, 621
BsiHKAI	GWGCWC	1 cut(s)	733
BsiSI	CCGG	1 cut(s)	366
BslFI	GGGAC	2 cut(s)	415, 971
BslI	CCNNNNNNNGG	2 cut(s)	369, 1035
BsmAI	GTCTC	1 cut(s)	133
BsmFI	GGGAC	2 cut(s)	415, 971
BsmI	GAATGC	3 cut(s)	356, 542, 707
BsnI	GGCC	3 cut(s)	229, 277, 476
Bsp1286I	GDGCHC	1 cut(s)	733
Bsp13I	TCCGGA	1 cut(s)	365
Bsp143I	GATC	2 cut(s)	262, 847
Bsp19I	CCATGG	1 cut(s)	547
BspACI	CCGC	6 cut(s)	36, 80, 103, 302, 377, 654
BspANI	GGCC	3 cut(s)	229, 277, 476
BspCNI	CTCAG	2 cut(s)	688, 1033
BspEI	TCCGGA	1 cut(s)	365
BspFNI	CGCG	1 cut(s)	834
BspLI	GGNNCC	3 cut(s)	61, 475, 623
BspPI	GGATC	1 cut(s)	842
BspT107I	GGYRCC	2 cut(s)	59, 621
BsrDI	GCAATG	1 cut(s)	24
BsrI	ACTGG	1 cut(s)	851
BssECI	CCNNGG	5 cut(s)	112, 272, 547, 625, 1029
BssMI	GATC	2 cut(s)	262, 847
BssSI	CACGAG	1 cut(s)	564
BssT1I	CCWWGG	3 cut(s)	272, 547, 1029
Bst2BI	CACGAG	1 cut(s)	564
Bst2UI	CCWGG	5 cut(s)	114, 231, 306, 417, 735
Bst4CI	ACNGT	4 cut(s)	607, 810, 973, 1005
Bst6I	CTCTTC	2 cut(s)	93, 104
BstC8I	GCNNGC	2 cut(s)	122, 375
BstDEI	CTNAG	4 cut(s)	224, 696, 1041, 1053
BstDSI	CCRYGG	2 cut(s)	547, 625
BstENI	CCTNNNNNAGG	1 cut(s)	367
BstF5I	GGATG	2 cut(s)	583, 1039
BstFNI	CGCG	1 cut(s)	834
BstH2I	RGCGCY	1 cut(s)	12
BstHHI	GCGC	2 cut(s)	11, 31
BstKTI	GATC	2 cut(s)	265, 850
BstMAI	GTCTC	1 cut(s)	133
BstMBI	GATC	2 cut(s)	262, 847
BstMWI	GCNNNNNNNGC	2 cut(s)	28, 35
BstNI	CCWGG	5 cut(s)	114, 231, 306, 417, 735
BstNSI	RCATGY	3 cut(s)	128, 209, 779
BstPAI	GACNNNNGTC	1 cut(s)	407
BstSCI	CCNGG	5 cut(s)	112, 229, 304, 415, 733
BstSFI	CTRYAG	1 cut(s)	865
BstSLI	GKGCMC	1 cut(s)	733
BstUI	CGCG	1 cut(s)	834
BstV1I	GCAGC	1 cut(s)	94
BsuRI	GGCC	3 cut(s)	229, 277, 476
BtgI	CCRYGG	2 cut(s)	547, 625
BtsCI	GGATG	2 cut(s)	583, 1039
BtsIMutI	CAGTG	2 cut(s)	534, 1061
Cac8I	GCNNGC	2 cut(s)	122, 375
CfoI	GCGC	2 cut(s)	11, 31
Cfr13I	GGNCC	2 cut(s)	320, 474
CseI	GACGC	4 cut(s)	505, 823, 840, 894
Csp6I	GTAC	2 cut(s)	60, 622
CspCI	CAANNNNNGTGG	2 cut(s)	862, 897
CviQI	GTAC	2 cut(s)	60, 622
DdeI	CTNAG	4 cut(s)	224, 696, 1041, 1053
DpnI	GATC	2 cut(s)	264, 849
DpnII	GATC	2 cut(s)	262, 847
Eam1104I	CTCTTC	2 cut(s)	93, 104
EarI	CTCTTC	2 cut(s)	93, 104
Eco130I	CCWWGG	3 cut(s)	272, 547, 1029
Eco147I	AGGCCT	2 cut(s)	229, 277
Eco47I	GGWCC	1 cut(s)	320
Eco47III	AGCGCT	1 cut(s)	10
Eco57I	CTGAAG	1 cut(s)	345
EcoNI	CCTNNNNNAGG	1 cut(s)	367
EcoO109I	RGGNCCY	1 cut(s)	474
EcoRI	GAATTC	1 cut(s)	552
EcoRII	CCWGG	5 cut(s)	112, 229, 304, 415, 733
EcoT14I	CCWWGG	3 cut(s)	272, 547, 1029
EcoT22I	ATGCAT	2 cut(s)	356, 542
ErhI	CCWWGG	3 cut(s)	272, 547, 1029
FalI	AAGNNNNNCTT	2 cut(s)	265, 297
FaqI	GGGAC	2 cut(s)	415, 971
FauI	CCCGC	2 cut(s)	43, 87
FblI	GTMKAC	2 cut(s)	202, 609
Fnu4HI	GCNGC	2 cut(s)	83, 378
FokI	GGATG	2 cut(s)	590, 1046
Fsp4HI	GCNGC	2 cut(s)	83, 378
FspBI	CTAG	1 cut(s)	12
FspI	TGCGCA	1 cut(s)	30
GlaI	GCGC	2 cut(s)	10, 30
GluI	GCNGC	2 cut(s)	83, 378
GsaI	CCCAGC	1 cut(s)	402
GsuI	CTGGAG	1 cut(s)	756
HaeII	RGCGCY	1 cut(s)	12
HaeIII	GGCC	3 cut(s)	229, 277, 476
HapII	CCGG	1 cut(s)	366
HgaI	GACGC	4 cut(s)	505, 823, 840, 894
HhaI	GCGC	2 cut(s)	11, 31
Hin6I	GCGC	2 cut(s)	9, 29
HinP1I	GCGC	2 cut(s)	9, 29
HincII	GTYRAC	1 cut(s)	927
HindII	GTYRAC	1 cut(s)	927
HindIII	AAGCTT	1 cut(s)	991
HinfI	GANTC	1 cut(s)	560
HpaI	GTTAAC	1 cut(s)	927
HpaII	CCGG	1 cut(s)	366
HphI	GGTGA	5 cut(s)	83, 234, 443, 477, 593
Hpy166II	GTNNAC	7 cut(s)	203, 320, 451, 610, 731, 884, 927
Hpy188I	TCNGA	1 cut(s)	903
Hpy188III	TCNNGA	9 cut(s)	144, 156, 260, 366, 389, 557, 564, 748, 770
Hpy8I	GTNNAC	7 cut(s)	203, 320, 451, 610, 731, 884, 927
Hpy99I	CGWCG	2 cut(s)	252, 965
HpyAV	CCTTC	3 cut(s)	191, 363, 916
HpyCH4III	ACNGT	4 cut(s)	607, 810, 973, 1005
HpyCH4IV	ACGT	1 cut(s)	220
HpyF10VI	GCNNNNNNNGC	2 cut(s)	28, 35
HpyF3I	CTNAG	4 cut(s)	224, 696, 1041, 1053
HpySE526I	ACGT	1 cut(s)	220
HspAI	GCGC	2 cut(s)	9, 29
Kpn2I	TCCGGA	1 cut(s)	365
KpnI	GGTACC	2 cut(s)	63, 625
KspAI	GTTAAC	1 cut(s)	927
Kzo9I	GATC	2 cut(s)	262, 847
Lsp1109I	GCAGC	1 cut(s)	94
MaeI	CTAG	1 cut(s)	12
MaeII	ACGT	1 cut(s)	220
MaeIII	GTNAC	4 cut(s)	483, 601, 691, 976
MalI	GATC	2 cut(s)	264, 849
MboI	GATC	2 cut(s)	262, 847
MboII	GAAGA	3 cut(s)	80, 91, 995
MfeI	CAATTG	1 cut(s)	930
MhlI	GDGCHC	1 cut(s)	733
MluCI	AATT	7 cut(s)	309, 435, 462, 552, 753, 765, 930
MluI	ACGCGT	1 cut(s)	832
MmeI	TCCRAC	1 cut(s)	808
Mph1103I	ATGCAT	2 cut(s)	356, 542
MroI	TCCGGA	1 cut(s)	365
MroXI	GAANNNNTTC	1 cut(s)	238
MseI	TTAA	5 cut(s)	591, 614, 896, 926, 1022
MslI	CAYNNNNRTG	2 cut(s)	527, 792
MspI	CCGG	1 cut(s)	366
MspR9I	CCNGG	5 cut(s)	114, 231, 306, 417, 735
MunI	CAATTG	1 cut(s)	930
Mva1269I	GAATGC	3 cut(s)	356, 542, 707
MvaI	CCWGG	5 cut(s)	114, 231, 306, 417, 735
MvnI	CGCG	1 cut(s)	834
MwoI	GCNNNNNNNGC	2 cut(s)	28, 35
NcoI	CCATGG	1 cut(s)	547
NdeII	GATC	2 cut(s)	262, 847
NlaIV	GGNNCC	3 cut(s)	61, 475, 623
NmuCI	GTSAC	1 cut(s)	483
NsbI	TGCGCA	1 cut(s)	30
NsiI	ATGCAT	2 cut(s)	356, 542
NspI	RCATGY	3 cut(s)	128, 209, 779
OliI	CACNNNNGTG	1 cut(s)	527
PceI	AGGCCT	2 cut(s)	229, 277
PctI	GAATGC	3 cut(s)	356, 542, 707
PdmI	GAANNNNTTC	1 cut(s)	238
PfeI	GAWTC	1 cut(s)	560
PkrI	GCNGC	2 cut(s)	84, 379
PshAI	GACNNNNGTC	1 cut(s)	407
Psp6I	CCWGG	5 cut(s)	112, 229, 304, 415, 733
PspFI	CCCAGC	1 cut(s)	398
PspGI	CCWGG	5 cut(s)	112, 229, 304, 415, 733
PspN4I	GGNNCC	3 cut(s)	61, 475, 623
PspPI	GGNCC	2 cut(s)	320, 474
RsaI	GTAC	2 cut(s)	61, 623
RsaNI	GTAC	2 cut(s)	60, 622
RseI	CAYNNNNRTG	2 cut(s)	527, 792
SaqAI	TTAA	5 cut(s)	591, 614, 896, 926, 1022
SatI	GCNGC	2 cut(s)	83, 378
Sau3AI	GATC	2 cut(s)	262, 847
Sau96I	GGNCC	2 cut(s)	320, 474
ScrFI	CCNGG	5 cut(s)	114, 231, 306, 417, 735
SduI	GDGCHC	1 cut(s)	733
SfcI	CTRYAG	1 cut(s)	865
SinI	GGWCC	1 cut(s)	320
SmiMI	CAYNNNNRTG	2 cut(s)	527, 792
SmlI	CTYRAG	1 cut(s)	572
SmoI	CTYRAG	1 cut(s)	572
Sse9I	AATT	7 cut(s)	309, 435, 462, 552, 753, 765, 930
SseBI	AGGCCT	2 cut(s)	229, 277
SsiI	CCGC	6 cut(s)	36, 80, 103, 302, 377, 654
SspMI	CTAG	1 cut(s)	12
StuI	AGGCCT	2 cut(s)	229, 277
StyD4I	CCNGG	5 cut(s)	112, 229, 304, 415, 733
StyI	CCWWGG	3 cut(s)	272, 547, 1029
TaaI	ACNGT	4 cut(s)	607, 810, 973, 1005
TaiI	ACGT	1 cut(s)	223
TaqI	TCGA	2 cut(s)	143, 805
TaqII	GACCGA	1 cut(s)	179
TasI	AATT	7 cut(s)	309, 435, 462, 552, 753, 765, 930
TauI	GCSGC	1 cut(s)	380
TfiI	GAWTC	1 cut(s)	560
Tru1I	TTAA	5 cut(s)	591, 614, 896, 926, 1022
Tru9I	TTAA	5 cut(s)	591, 614, 896, 926, 1022
TscAI	CASTG	2 cut(s)	534, 1061
TseFI	GTSAC	1 cut(s)	483
TseI	GCWGC	1 cut(s)	82
Tsp45I	GTSAC	1 cut(s)	483
TspDTI	ATGAA	4 cut(s)	210, 447, 549, 830
TspRI	CASTG	2 cut(s)	534, 1061
VneI	GTGCAC	1 cut(s)	729
VpaK11BI	GGWCC	1 cut(s)	320
XagI	CCTNNNNNAGG	1 cut(s)	367
XapI	RAATTY	1 cut(s)	552
XceI	RCATGY	3 cut(s)	128, 209, 779
XmiI	GTMKAC	2 cut(s)	202, 609
XmnI	GAANNNNTTC	1 cut(s)	238
XspI	CTAG	1 cut(s)	12
Zsp2I	ATGCAT	2 cut(s)	356, 542

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.