Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0006508

Physical Location & Seq

Genomic Coordinates Reverse (-)

14686243 .. 14693945

Gene Structure 7703 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1169900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGGTGACAGGCGCGAGCGCAATGCGTGCTGTTCAACCCACAATCCTCTCCTCCTTTGTGGGCAACCGCTTGCTTCAGTCGGCGCACCCTCTCCACCAACTCTTCGGCTTCCATCCAGGAAGCAAGCATGTGTCAATGCAGTTACCCAGAAAATTTTCTGGCTTGACAAACCTCTTGTTCAATGGAAGAAATGTAGATAAAGTGGTAAACAAGCGCAAACGTCTAAGACCTGGAAAAATTTCACCTCAGCGCCCTGTTCCAGATCATATACTGAGGCCTCCTTACGTCAAATCTAAAAAATCGCCTGGAATTGCGAGTGGACCTGAAGTGCATGATGAGAAAGGGATAGAATGCATGAGAACCTCTGGAAGGCTAGCAGCACAGGTTCTTGAATATGCTGGAACTTTGGTCAAGCCAGGCACAAAGACAGATGAAATTGACCAAGCTGTTCACCAAATGATAATTGATAAGGGGGCCTACCCTTCACCACTTGGCTATGGTGGGTTTCCAAAGAGTGTATGCACATCAGTGAATGAATGTATTTGCCATGGAATACCAGATTCCCGAGCACTTGAGGATGGTGATATAGTTAATATTGATGTTACGGTCTATTTAAATGGGTATCATGGTGATACATCAACGACTTTCTTTTGTGGAGATGTTGATAATGAGGCAAGAAAGTTAGTTCAGGTAACTAAAGAATGTCTCGACAAGGCAATCTCAATATGTGCGCCAGGAGTGGAGTATAAGAAAATTGGCAAAACAATCCAAGACCATGCAGATAAAAACCGCTATGGTGTTGTTCGACAGTTTGTTGGTCATGGAGTTGGACGCGTCTTTCATGCTGATCCAGTTATTCTACACTTCAGGAACAATGATAGTGGACGCATGTTATTAAACCAAACTTTCACAATAGAACCGATGCTGACGATGGGTAGCTATAATGCTGTAATGTGGGACGATAACTGGACGGTAGTCACAGAAGATGGAAGCTTGTCAGCGCAGTTCGAACATACCATTTTAATAACCGAGGATGGGGCTGAGATACTAACTCAGTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0019538 GO:0031365 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071704 GO:0097305 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M24

Protein Analysis

354

Amino Acids

38.82

Weight (kDa)

8.07

Isoelectric Point (pI)

34.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M24	PF00557	117 - 344	8.3e-53	Metallopeptidase family M24

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006508)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25740 AT3G25740 AT4G37040
fragaria_vesca	FvH4_1g15810 FvH4_1g15810 FvH4_1g15810 FvH4_1g15810 FvH4_1g15810 FvH4_1g15810
malus_domestica	MD00G1045000.v1.1 MD02G1169900.v1.1
prunus_persica	Prupe.7G135200_v2.0.a1 Prupe.7G135300_v2.0.a1
pyrus_communis	pycom02g13680
rosa_chinensis	RchiOBHm_Chr2g0105091 RchiOBHm_Chr5g0066781
rosa_laevigata	RLG00000017402
rosa_multiflora	Rmu_sc0005160.1_g000008
rosa_roxburghii	Rroxscaffold_2G00138430
rosa_rugosa	Rorug02G0126300
rosa_samantha	Rh2AG177000 Rh2AG177100 Rh2BG185100 Rh2CG181400 Rh2DG183200
rosa_wichuraiana	Rw2G013890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	14, 834
AciI	CCGC	2 cut(s)	67, 790
AclWI	GGATC	1 cut(s)	842
AcsI	RAATTY	2 cut(s)	152, 237
AcuI	CTGAAG	3 cut(s)	59, 345, 850
AfiI	CCNNNNNNNGG	2 cut(s)	369, 1035
AflIII	ACRYGT	1 cut(s)	832
AgsI	TTSAA	3 cut(s)	35, 181, 392
AjnI	CCWGG	5 cut(s)	115, 229, 304, 415, 733
AleI	CACNNNNGTG	1 cut(s)	527
AluBI	AGCT	3 cut(s)	446, 939, 993
AluI	AGCT	3 cut(s)	446, 939, 993
Alw21I	GWGCWC	1 cut(s)	571
Alw26I	GTCTC	1 cut(s)	710
AlwI	GGATC	1 cut(s)	842
Ama87I	CYCGRG	1 cut(s)	564
AoxI	GGCC	2 cut(s)	275, 474
ApeKI	GCWGC	1 cut(s)	377
ApoI	RAATTY	2 cut(s)	152, 237
Asp700I	GAANNNNTTC	2 cut(s)	154, 238
AspLEI	GCGC	7 cut(s)	14, 20, 85, 216, 252, 733, 1003
AspS9I	GGNCC	2 cut(s)	320, 474
AsuHPI	GGTGA	6 cut(s)	16, 234, 443, 477, 593, 641
AsuII	TTCGAA	1 cut(s)	1008
AsuNHI	GCTAGC	1 cut(s)	373
AvaI	CYCGRG	1 cut(s)	564
AvaII	GGWCC	1 cut(s)	320
Bbv12I	GWGCWC	1 cut(s)	571
BbvCI	CCTCAGC	1 cut(s)	246
BbvI	GCAGC	1 cut(s)	389
BccI	CCATC	5 cut(s)	120, 572, 925, 980, 1028
BcgI	CGANNNNNNTGC	2 cut(s)	4, 38
BciT130I	CCWGG	5 cut(s)	117, 231, 306, 417, 735
BcoDI	GTCTC	1 cut(s)	710
BfaI	CTAG	1 cut(s)	374
BfoI	RGCGCY	1 cut(s)	253
BisI	GCNGC	1 cut(s)	378
BlsI	GCNGC	1 cut(s)	379
Bme1390I	CCNGG	5 cut(s)	117, 231, 306, 417, 735
Bme18I	GGWCC	1 cut(s)	320
BmeT110I	CYCGRG	1 cut(s)	564
BmgT120I	GGNCC	2 cut(s)	320, 474
BmiI	GGNNCC	1 cut(s)	475
BmrFI	CCNGG	5 cut(s)	117, 231, 306, 417, 735
BmsI	GCATC	1 cut(s)	912
BmtI	GCTAGC	1 cut(s)	377
BoxI	GACNNNNGTC	1 cut(s)	974
Bpu10I	CCTNAGC	1 cut(s)	246
Bpu14I	TTCGAA	1 cut(s)	1008
BpuEI	CTTGAG	1 cut(s)	593
BsaJI	CCNNGG	2 cut(s)	547, 1029
Bsc4I	CCNNNNNNNGG	2 cut(s)	369, 1035
Bse1I	ACTGG	2 cut(s)	851, 971
Bse3DI	GCAATG	1 cut(s)	27
BseBI	CCWGG	5 cut(s)	117, 231, 306, 417, 735
BseDI	CCNNGG	2 cut(s)	547, 1029
BseGI	GGATG	3 cut(s)	112, 583, 1039
BseLI	CCNNNNNNNGG	2 cut(s)	369, 1035
BseMI	GCAATG	1 cut(s)	27
BseMII	CTCAG	3 cut(s)	260, 263, 1032
BseNI	ACTGG	2 cut(s)	851, 971
BseRI	GAGGAG	1 cut(s)	40
BseXI	GCAGC	1 cut(s)	389
Bsh1236I	CGCG	2 cut(s)	14, 834
BshFI	GGCC	2 cut(s)	277, 476
BsiHKAI	GWGCWC	1 cut(s)	571
BsiHKCI	CYCGRG	1 cut(s)	564
BslFI	GGGAC	1 cut(s)	971
BslI	CCNNNNNNNGG	2 cut(s)	369, 1035
BsmAI	GTCTC	1 cut(s)	710
BsmFI	GGGAC	1 cut(s)	971
BsmI	GAATGC	1 cut(s)	356
BsnI	GGCC	2 cut(s)	277, 476
BsoBI	CYCGRG	1 cut(s)	564
Bsp119I	TTCGAA	1 cut(s)	1008
Bsp1286I	GDGCHC	1 cut(s)	571
Bsp143I	GATC	2 cut(s)	262, 847
Bsp19I	CCATGG	1 cut(s)	547
BspACI	CCGC	2 cut(s)	67, 790
BspANI	GGCC	2 cut(s)	277, 476
BspCNI	CTCAG	3 cut(s)	259, 264, 1033
BspFNI	CGCG	2 cut(s)	14, 834
BspLI	GGNNCC	1 cut(s)	475
BspOI	GCTAGC	1 cut(s)	377
BspPI	GGATC	1 cut(s)	842
BspT104I	TTCGAA	1 cut(s)	1008
BsrDI	GCAATG	1 cut(s)	27
BsrI	ACTGG	2 cut(s)	851, 971
BssECI	CCNNGG	2 cut(s)	547, 1029
BssMI	GATC	2 cut(s)	262, 847
BssT1I	CCWWGG	1 cut(s)	547
Bst2UI	CCWGG	5 cut(s)	117, 231, 306, 417, 735
Bst4CI	ACNGT	3 cut(s)	607, 810, 973
Bst6I	CTCTTC	1 cut(s)	107
BstAPI	GCANNNNNTGC	1 cut(s)	26
BstBI	TTCGAA	1 cut(s)	1008
BstC8I	GCNNGC	5 cut(s)	16, 27, 71, 125, 375
BstDEI	CTNAG	5 cut(s)	224, 246, 272, 1041, 1053
BstDSI	CCRYGG	1 cut(s)	547
BstENI	CCTNNNNNAGG	1 cut(s)	367
BstF5I	GGATG	3 cut(s)	112, 583, 1039
BstFNI	CGCG	2 cut(s)	14, 834
BstH2I	RGCGCY	1 cut(s)	253
BstHHI	GCGC	7 cut(s)	14, 20, 85, 216, 252, 733, 1003
BstKTI	GATC	2 cut(s)	265, 850
BstMAI	GTCTC	1 cut(s)	710
BstMBI	GATC	2 cut(s)	262, 847
BstMWI	GCNNNNNNNGC	1 cut(s)	26
BstNI	CCWGG	5 cut(s)	117, 231, 306, 417, 735
BstNSI	RCATGY	2 cut(s)	131, 892
BstPAI	GACNNNNGTC	1 cut(s)	974
BstSCI	CCNGG	5 cut(s)	115, 229, 304, 415, 733
BstUI	CGCG	2 cut(s)	14, 834
BstV1I	GCAGC	1 cut(s)	389
BsuRI	GGCC	2 cut(s)	277, 476
BtgI	CCRYGG	1 cut(s)	547
BtsCI	GGATG	3 cut(s)	112, 583, 1039
BtsIMutI	CAGTG	2 cut(s)	534, 1061
Cac8I	GCNNGC	5 cut(s)	16, 27, 71, 125, 375
CfoI	GCGC	7 cut(s)	14, 20, 85, 216, 252, 733, 1003
Cfr13I	GGNCC	2 cut(s)	320, 474
CseI	GACGC	3 cut(s)	823, 840, 894
CspCI	CAANNNNNGTGG	2 cut(s)	862, 897
CviAII	CATG	9 cut(s)	128, 332, 355, 548, 626, 776, 821, 842, 889
DdeI	CTNAG	5 cut(s)	224, 246, 272, 1041, 1053
DpnI	GATC	2 cut(s)	264, 849
DpnII	GATC	2 cut(s)	262, 847
DraI	TTTAAA	1 cut(s)	615
Eam1104I	CTCTTC	1 cut(s)	107
EarI	CTCTTC	1 cut(s)	107
Eco130I	CCWWGG	1 cut(s)	547
Eco147I	AGGCCT	1 cut(s)	277
Eco47I	GGWCC	1 cut(s)	320
Eco57I	CTGAAG	3 cut(s)	59, 345, 850
Eco88I	CYCGRG	1 cut(s)	564
EcoNI	CCTNNNNNAGG	1 cut(s)	367
EcoO109I	RGGNCCY	1 cut(s)	474
EcoRII	CCWGG	5 cut(s)	115, 229, 304, 415, 733
EcoT14I	CCWWGG	1 cut(s)	547
EcoT22I	ATGCAT	1 cut(s)	356
ErhI	CCWWGG	1 cut(s)	547
FaeI	CATG	9 cut(s)	131, 335, 358, 551, 629, 779, 824, 845, 892
FaqI	GGGAC	1 cut(s)	971
FatI	CATG	9 cut(s)	127, 331, 354, 547, 625, 775, 820, 841, 888
Fnu4HI	GCNGC	1 cut(s)	378
FokI	GGATG	3 cut(s)	99, 590, 1046
Fsp4HI	GCNGC	1 cut(s)	378
FspBI	CTAG	1 cut(s)	374
GlaI	GCGC	7 cut(s)	13, 19, 84, 215, 251, 732, 1002
GluI	GCNGC	1 cut(s)	378
HaeII	RGCGCY	1 cut(s)	253
HaeIII	GGCC	2 cut(s)	277, 476
HgaI	GACGC	3 cut(s)	823, 840, 894
HhaI	GCGC	7 cut(s)	14, 20, 85, 216, 252, 733, 1003
Hin1II	CATG	9 cut(s)	131, 335, 358, 551, 629, 779, 824, 845, 892
Hin6I	GCGC	7 cut(s)	12, 18, 83, 214, 250, 731, 1001
HinP1I	GCGC	7 cut(s)	12, 18, 83, 214, 250, 731, 1001
HindIII	AAGCTT	1 cut(s)	991
HinfI	GANTC	1 cut(s)	560
HphI	GGTGA	6 cut(s)	16, 234, 443, 477, 593, 641
Hpy166II	GTNNAC	4 cut(s)	208, 320, 451, 884
Hpy188III	TCNNGA	6 cut(s)	260, 366, 389, 564, 707, 868
Hpy8I	GTNNAC	4 cut(s)	208, 320, 451, 884
HpyAV	CCTTC	2 cut(s)	363, 492
HpyCH4III	ACNGT	3 cut(s)	607, 810, 973
HpyCH4IV	ACGT	2 cut(s)	220, 285
HpyCH4V	TGCA	5 cut(s)	139, 331, 354, 522, 779
HpyF10VI	GCNNNNNNNGC	1 cut(s)	26
HpyF3I	CTNAG	5 cut(s)	224, 246, 272, 1041, 1053
HpySE526I	ACGT	2 cut(s)	220, 285
Hsp92II	CATG	9 cut(s)	131, 335, 358, 551, 629, 779, 824, 845, 892
HspAI	GCGC	7 cut(s)	12, 18, 83, 214, 250, 731, 1001
Kzo9I	GATC	2 cut(s)	262, 847
Lsp1109I	GCAGC	1 cut(s)	389
LweI	GCATC	1 cut(s)	912
MaeI	CTAG	1 cut(s)	374
MaeII	ACGT	2 cut(s)	220, 285
MaeIII	GTNAC	5 cut(s)	4, 141, 601, 691, 976
MalI	GATC	2 cut(s)	264, 849
MboI	GATC	2 cut(s)	262, 847
MboII	GAAGA	3 cut(s)	94, 198, 995
MhlI	GDGCHC	1 cut(s)	571
MluCI	AATT	6 cut(s)	152, 237, 309, 435, 462, 753
MluI	ACGCGT	1 cut(s)	832
MmeI	TCCRAC	1 cut(s)	808
Mph1103I	ATGCAT	1 cut(s)	356
MroXI	GAANNNNTTC	2 cut(s)	154, 238
MseI	TTAA	4 cut(s)	591, 614, 896, 1022
MslI	CAYNNNNRTG	1 cut(s)	527
MspR9I	CCNGG	5 cut(s)	117, 231, 306, 417, 735
Mva1269I	GAATGC	1 cut(s)	356
MvaI	CCWGG	5 cut(s)	117, 231, 306, 417, 735
MvnI	CGCG	2 cut(s)	14, 834
MwoI	GCNNNNNNNGC	1 cut(s)	26
NcoI	CCATGG	1 cut(s)	547
NdeII	GATC	2 cut(s)	262, 847
NheI	GCTAGC	1 cut(s)	373
NlaIII	CATG	9 cut(s)	131, 335, 358, 551, 629, 779, 824, 845, 892
NlaIV	GGNNCC	1 cut(s)	475
NmuCI	GTSAC	2 cut(s)	4, 976
NsiI	ATGCAT	1 cut(s)	356
NspI	RCATGY	2 cut(s)	131, 892
NspV	TTCGAA	1 cut(s)	1008
OliI	CACNNNNGTG	1 cut(s)	527
PceI	AGGCCT	1 cut(s)	277
PctI	GAATGC	1 cut(s)	356
PdmI	GAANNNNTTC	2 cut(s)	154, 238
PfeI	GAWTC	1 cut(s)	560
PfoI	TCCNGGA	1 cut(s)	115
PkrI	GCNGC	1 cut(s)	379
PshAI	GACNNNNGTC	1 cut(s)	974
Psp6I	CCWGG	5 cut(s)	115, 229, 304, 415, 733
PspGI	CCWGG	5 cut(s)	115, 229, 304, 415, 733
PspN4I	GGNNCC	1 cut(s)	475
PspPI	GGNCC	2 cut(s)	320, 474
RseI	CAYNNNNRTG	1 cut(s)	527
SaqAI	TTAA	4 cut(s)	591, 614, 896, 1022
SatI	GCNGC	1 cut(s)	378
Sau3AI	GATC	2 cut(s)	262, 847
Sau96I	GGNCC	2 cut(s)	320, 474
ScrFI	CCNGG	5 cut(s)	117, 231, 306, 417, 735
SduI	GDGCHC	1 cut(s)	571
SfaNI	GCATC	1 cut(s)	912
SfuI	TTCGAA	1 cut(s)	1008
SinI	GGWCC	1 cut(s)	320
SmiI	ATTTAAAT	1 cut(s)	615
SmiMI	CAYNNNNRTG	1 cut(s)	527
SmlI	CTYRAG	1 cut(s)	572
SmoI	CTYRAG	1 cut(s)	572
Sse9I	AATT	6 cut(s)	152, 237, 309, 435, 462, 753
SseBI	AGGCCT	1 cut(s)	277
SsiI	CCGC	2 cut(s)	67, 790
SspI	AATATT	1 cut(s)	595
SspMI	CTAG	1 cut(s)	374
StuI	AGGCCT	1 cut(s)	277
StyD4I	CCNGG	5 cut(s)	115, 229, 304, 415, 733
StyI	CCWWGG	1 cut(s)	547
SwaI	ATTTAAAT	1 cut(s)	615
TaaI	ACNGT	3 cut(s)	607, 810, 973
TaiI	ACGT	2 cut(s)	223, 288
TaqI	TCGA	3 cut(s)	708, 805, 1008
TasI	AATT	6 cut(s)	152, 237, 309, 435, 462, 753
TfiI	GAWTC	1 cut(s)	560
Tru1I	TTAA	4 cut(s)	591, 614, 896, 1022
Tru9I	TTAA	4 cut(s)	591, 614, 896, 1022
TscAI	CASTG	2 cut(s)	534, 1061
TseFI	GTSAC	2 cut(s)	4, 976
TseI	GCWGC	1 cut(s)	377
Tsp45I	GTSAC	2 cut(s)	4, 976
TspDTI	ATGAA	3 cut(s)	447, 549, 830
TspRI	CASTG	2 cut(s)	534, 1061
VpaK11BI	GGWCC	1 cut(s)	320
XagI	CCTNNNNNAGG	1 cut(s)	367
XapI	RAATTY	2 cut(s)	152, 237
XceI	RCATGY	2 cut(s)	131, 892
XmnI	GAANNNNTTC	2 cut(s)	154, 238
XspI	CTAG	1 cut(s)	374
Zsp2I	ATGCAT	1 cut(s)	356

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.