RLG00000017402

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0006508
Physical Location & Seq
Reverse (-)
16142893 .. 16150260
7368 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000017402

Sequence Viewer

Length: 3051 bp
ATGGTAAGCGCAAGTGCAATGCGTGCTGTACAACCCGCAATCCTCTCCTCCTTTGTGGGTACCCACTTGCTTCACTCACCGCAGCCTCTTCACCAACTCTTCCGCTACAACCCAGGCGCACAAATTATGGCATTGACCTATACTGTGCTAAAGTCTAATTCTTCAACCATCAGATTGATGTTTATGCCTAGTTCTCTTTACGGGGTCCCAAATGTGATGAGAATATGGAGCCTTCAGCGTGGAATCTCAATCTTGTCCACGAATAGCAAACCACCCTCTTCTTCCAAACTCCATTACTGTCTACAACTTTGCAGCAATTCAAAGTCTCTAAATCAAGGAAAACAAACCCATCAAAAGATAATCCAATGTCAGTTGGGTAAAAATCCATTCCTAGTCACCAAATTAGTCCAGATGTATGCAGACTGCGATGATTTGGCATCTGCCCGAAAGTTGTTTAACGAATTGTTGGAACCGAATGTGTTTGCTTGGACTGCTATCCTCGGATTCTATTCAAGGCATGGAATGTATGAAGAATGTGTGGGAGCATATGGTGAAATGATATTGAGGGGAGTTTTGCCAGATGGGTATGTGTTCCCTAAGGTCTTGAGGGCTTGTGCATATTTCTCAAGCTTAAAAGTGGGAATTCGGGTTCACAAAGATGTCATCATAAGTGGTTTTGAGATTAACGTGCAGGTTTGTAATTCATTGATTGAGATGTATTCAAAATGTGGGGACATTAGGTGTGCTAAGCAAGTTTTTGATGAGATGGTGGCAAGAGATTTATTGACATGGAACTTAATGATCTCAGGATTTGTGTGTAATGGCATGCTTGGATGGGCTATCGAACTATTTGGTTGTATGAATTTGGATGGTTGTGAACCTGATGTTGTCACTTTGAATACGGTAATGGATGCTTATTGCCGAATGGGGCTCTGTGATGAGGCTAAGGGAATCTTTAAACATATTAAGGAGCCTAATATCATTTCATGGACCACTTTGATATCAGGATATTCAAGAATTGGGAATCATGAAGCATCCTTGGGGATTTTCAGGGATATGATGAATAGCAGCATGGTCTACCCTGATTTAGATTCTCTTTCTATTGCTCTTGTTTCCTCTCGGCATCTTGGGTCTTTGTTAAGTGGAAAAGAAATCCATGGTTATGGGTTAAAAAGGGAATCTGGCATTGTATTTTACAACTCAGCTGGCCCTGCATTGTTGACAATGTATGCTAACTGCCGTAGAATTCAGGAGGCTGAAAATGTATTTAGATTTATGGACCCAGCTCAGGTTGTTAGTTGGAATGCAATGATTCTTGGCTTTATTGACCTTGGGTTGGAGGATTTAGCACTTGAATGCTTTAGGAAAATGCAAATAGCAGAGATCAAGCTTGACCAAACAACATTATCCACTGTCTTGCCAACATGCAACTTAAAAATTGGAAAGCAAATTCATGCGTTCATTTGGAAAAGTAGTTTCGATTTGGTTGTTCCAGTATGGAATGCTCTTATCCATATGTACTCCAAATGTGGATGCATTGGAGCTGCATACTCTGTATTTTCTAACATGTTAAATAGGGATTTAGTGTCATGGAACTCAATGATGGGAGGCTTTGCAATGAATGGGCTTGGCCAAGCTGCACTTGAGCTTCTACAAGAGATGAATCGTTCAGGCATTTGCCCCAATTCAGTAACTCTTACTTCTGTATTGTCAGCATGTAGTCACTCAGGTCTTGTGGATGAGGGCCTTCGGGTCTTCTATAGTATGATGGAGAACGGTTTCAACCCCACAATGGAACAATATGCCTGCATTGTTGACATGCTGGCACGTGATGGTCTATTTGAAGATGCAGTTAGTTTTATTCATAGGATGCCGTTGGAGCCTGATAAGTGTATTTGGGGAGCTCTGTTAGCTGCCTGCCTAGCCCATCAAAATGTTAATGTTGCAAAGCTTGCTGCTGAACAGTTAGTTCAGTTGGAACCCGAAAATCCTGGGCACTATGTCACCCTGTCAAATATATATGCAAGAGCTGGAAGATGGGATGATGCTGTACTGGTGAGAAAGCAAATGGAATCCCAAGGATCGTTGAAGCCATCAGGAAACAGAAGCAAGCATGTCACTATGCAGTTATCCAGAGGATTTTCGGGCCTGACCGACCTCTTGTTCAATGGAAGAAATGCAGGTGAAGTGCTAAATGCCAAGCGGAAACGCTTAAGGCCTGGAAAAGTTTCACCTCGTCGCCCTGTTCCAGATCATATACCAAGGCCGCCTTATGTAAAATCTAAAAAACCACCTGGAATTGCGAGTGGACCTGAAGTGCATGATCAAGAGGGAATAGAATGCATGAGAGTTTCTGGGAGGCTTGCAGCACAGGTTCTTGAATATGCTGGGACTTTGGTCAAGCCAGGCATAAAGACTGATGAAATTGACCAAGCTGTTCACCAAATGATAATTGATAATGGGGCTTACCCTTCACCACTTGGCTATGGTGGATTTCCAAAGAGCGTCTGCACATCAGTGAATGAATGCATTTGCCATGGAATACCAGATTCCCGAGAACTGGAGGATGGTGACATAGTTAACATTGACGTAACAGTCTATTTGAATGGGTACCATGGCGATACATCAAAAACTTTCTTTTGTGGAGATGTTGATGATGTGGGCAGAAACTTAGTTCAGGTAACTAAGGAATGCCTTGACAAAGCAATATCAATTTGTGCGCCTGGCGTGGAGTTTAAGAAAATTGGCAGAACAATCCAAGAGCATGCAGATAAACATCGTTATGGTGTTGTTAGACAGTTCGTTGGGCATGGTGTTGGACGTGTCTTTCATGCTGATCCAGTTGTTCTACACTACAGAAACAATGACAGTGGACGCATGGTGTTAAATCAAACCTTCACGATAGAACCGATGCTAACGATTGGTAGCTATAATCCTGTAATGTGGGATGACGATTGGACAGTTGTTACAGAAGATGGAAGCTTATCAGCACAGTTTGAACATACTATCTTAATAACCAAGGATGGGGCTGAGATACTAACTCAGTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

1017

Amino Acids

112.53

Weight (kDa)

6.75

Isoelectric Point (pI)

38.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 158 - 205 6.1e-06 PPR repeat family
PPR_2 PF13041 260 - 308 1.8e-09 PPR repeat family
PPR_1 PF12854 290 - 320 2.4e-08 PPR repeat
PPR_2 PF13041 527 - 574 2.7e-11 PPR repeat family
PPR PF01535 529 - 559 1e-06 PPR repeat
PPR_3 PF13812 550 - 607 2.6e-06 Pentatricopeptide repeat domain
E_motif PF20431 643 - 697 1.4e-14 E motif
Peptidase_M24 PF00557 780 - 1007 1.9e-51 Metallopeptidase family M24
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 2171
AasI GACNNNNNNGTC 1 cut(s) 2594
Acc36I ACCTGC 2 cut(s) 682, 2171
Acc65I GGTACC 2 cut(s) 59, 2610
AccB1I GGYRCC 2 cut(s) 59, 2610
AccI GTMKAC 2 cut(s) 301, 1077
AciI CCGC 5 cut(s) 36, 80, 103, 2203, 2267
AclWI GGATC 2 cut(s) 2089, 2831
AcoI YGGCCR 1 cut(s) 1630
AcsI RAATTY 4 cut(s) 642, 862, 1245, 1449
AcuI CTGAAG 2 cut(s) 218, 2334
AcvI CACGTG 1 cut(s) 1829
AfaI GTAC 5 cut(s) 30, 61, 1520, 2052, 2612
AfiI CCNNNNNNNGG 5 cut(s) 1288, 1336, 1792, 2560, 3024
AflII CTTAAG 1 cut(s) 2212
AflIII ACRYGT 2 cut(s) 1566, 2821
AjiI CACGTC 1 cut(s) 2822
AjnI CCWGG 6 cut(s) 112, 1990, 2218, 2293, 2404, 2722
AleI CACNNNNGTG 1 cut(s) 2516
AloI GAACNNNNNNTCC 2 cut(s) 633, 665
Alw21I GWGCWC 1 cut(s) 1906
Alw26I GTCTC 1 cut(s) 330
AlwI GGATC 2 cut(s) 2089, 2831
Ama87I CYCGRG 1 cut(s) 2553
AoxI GGCC 6 cut(s) 1207, 1630, 1744, 2146, 2216, 2264
ApeKI GCWGC 8 cut(s) 82, 312, 1068, 1544, 1637, 1913, 1955, 2366
ApoI RAATTY 4 cut(s) 642, 862, 1245, 1449
Asp700I GAANNNNTTC 2 cut(s) 1778, 2227
Asp718I GGTACC 2 cut(s) 59, 2610
AspLEI GCGC 3 cut(s) 11, 119, 2722
AspS9I GGNCC 7 cut(s) 205, 990, 1208, 1279, 1744, 2146, 2309
AvaI CYCGRG 1 cut(s) 2553
AvaII GGWCC 4 cut(s) 205, 990, 1279, 2309
AxyI CCTNAGG 1 cut(s) 597
BaeGI GKGCMC 1 cut(s) 1998
BalI TGGCCA 1 cut(s) 1632
BanI GGYRCC 2 cut(s) 59, 2610
BanII GRGCYC 2 cut(s) 933, 1906
BbrPI CACGTG 1 cut(s) 1829
BbsI GAAGAC 1 cut(s) 1747
Bbv12I GWGCWC 1 cut(s) 1906
BbvI GCAGC 8 cut(s) 94, 324, 1080, 1531, 1624, 1900, 1942, 2378
BceAI ACGGC 2 cut(s) 1224, 1858
BciT130I CCWGG 6 cut(s) 114, 1992, 2220, 2295, 2406, 2724
BclI TGATCA 1 cut(s) 2323
BcoDI GTCTC 1 cut(s) 330
BfaI CTAG 3 cut(s) 189, 392, 1922
BfmI CTRYAG 2 cut(s) 1759, 2854
BfrI CTTAAG 1 cut(s) 2212
BfuAI ACCTGC 2 cut(s) 682, 2171
BisI GCNGC 9 cut(s) 83, 313, 1069, 1545, 1638, 1914, 1956, 2267, 2367
BlpI GCTNAGC 1 cut(s) 747
BlsI GCNGC 9 cut(s) 84, 314, 1070, 1546, 1639, 1915, 1957, 2268, 2368
Bme1390I CCNGG 6 cut(s) 114, 1992, 2220, 2295, 2406, 2724
Bme18I GGWCC 4 cut(s) 205, 990, 1279, 2309
BmeT110I CYCGRG 1 cut(s) 2553
BmgBI CACGTC 1 cut(s) 2822
BmgT120I GGNCC 7 cut(s) 205, 990, 1208, 1279, 1744, 2146, 2309
BmrFI CCNGG 6 cut(s) 114, 1992, 2220, 2295, 2406, 2724
BmsI GCATC 9 cut(s) 446, 901, 1043, 1132, 1523, 1837, 1860, 2035, 2901
BoxI GACNNNNGTC 1 cut(s) 2396
BpiI GAAGAC 1 cut(s) 1747
BpmI CTGGAG 1 cut(s) 2582
Bpu10I CCTNAGC 2 cut(s) 945, 1287
Bpu1102I GCTNAGC 1 cut(s) 747
BpuEI CTTGAG 3 cut(s) 610, 625, 1664
BsaAI YACGTR 1 cut(s) 1829
BsaBI GATNNNNATC 1 cut(s) 2775
Bsc4I CCNNNNNNNGG 5 cut(s) 1288, 1336, 1792, 2560, 3024
Bse1I ACTGG 4 cut(s) 1493, 2058, 2565, 2840
Bse21I CCTNAGG 1 cut(s) 597
Bse3DI GCAATG 3 cut(s) 24, 1314, 1623
Bse8I GATNNNNATC 1 cut(s) 2775
BseBI CCWGG 6 cut(s) 114, 1992, 2220, 2295, 2406, 2724
BseJI GATNNNNATC 1 cut(s) 2775
BseLI CCNNNNNNNGG 5 cut(s) 1288, 1336, 1792, 2560, 3024
BseMI GCAATG 3 cut(s) 24, 1314, 1623
BseMII CTCAG 5 cut(s) 819, 1215, 1301, 1740, 3021
BseNI ACTGG 4 cut(s) 1493, 2058, 2565, 2840
BseRI GAGGAG 1 cut(s) 37
BseSI GKGCMC 1 cut(s) 1998
BseXI GCAGC 8 cut(s) 94, 324, 1080, 1531, 1624, 1900, 1942, 2378
BseYI CCCAGC 2 cut(s) 1282, 2387
BsgI GTGCAG 3 cut(s) 710, 1623, 2494
BshFI GGCC 6 cut(s) 1209, 1632, 1746, 2148, 2218, 2266
BshNI GGYRCC 2 cut(s) 59, 2610
BsiHKAI GWGCWC 1 cut(s) 1906
BsiHKCI CYCGRG 1 cut(s) 2553
BslFI GGGAC 3 cut(s) 191, 746, 2404
BslI CCNNNNNNNGG 5 cut(s) 1288, 1336, 1792, 2560, 3024
BsmAI GTCTC 1 cut(s) 330
BsmFI GGGAC 3 cut(s) 191, 746, 2404
BsmI GAATGC 6 cut(s) 1309, 1361, 1507, 2345, 2531, 2696
BsnI GGCC 6 cut(s) 1209, 1632, 1746, 2148, 2218, 2266
BsoBI CYCGRG 1 cut(s) 2553
Bsp1286I GDGCHC 3 cut(s) 933, 1906, 1998
Bsp1407I TGTACA 1 cut(s) 28
Bsp143I GATC 6 cut(s) 801, 1383, 2081, 2251, 2323, 2836
Bsp1720I GCTNAGC 1 cut(s) 747
Bsp19I CCATGG 3 cut(s) 1156, 2536, 2614
BspACI CCGC 5 cut(s) 36, 80, 103, 2203, 2267
BspANI GGCC 6 cut(s) 1209, 1632, 1746, 2148, 2218, 2266
BspCNI CTCAG 5 cut(s) 818, 1214, 1300, 1739, 3022
BspHI TCATGA 1 cut(s) 1027
BspMI ACCTGC 2 cut(s) 682, 2171
BspPI GGATC 2 cut(s) 2089, 2831
BspT107I GGYRCC 2 cut(s) 59, 2610
BspTI CTTAAG 1 cut(s) 2212
BsrDI GCAATG 3 cut(s) 24, 1314, 1623
BsrGI TGTACA 1 cut(s) 28
BsrI ACTGG 4 cut(s) 1493, 2058, 2565, 2840
BssMI GATC 6 cut(s) 801, 1383, 2081, 2251, 2323, 2836
BssT1I CCWWGG 8 cut(s) 1038, 1156, 1330, 2077, 2261, 2536, 2614, 3018
Bst2UI CCWGG 6 cut(s) 114, 1992, 2220, 2295, 2406, 2724
Bst6I CTCTTC 3 cut(s) 93, 104, 283
BstAFI CTTAAG 1 cut(s) 2212
BstAPI GCANNNNNTGC 2 cut(s) 23, 1952
BstAUI TGTACA 1 cut(s) 28
BstBAI YACGTR 1 cut(s) 1829
BstDSI CCRYGG 3 cut(s) 1156, 2536, 2614
BstHHI GCGC 3 cut(s) 11, 119, 2722
BstKTI GATC 6 cut(s) 804, 1386, 2084, 2254, 2326, 2839
BstMAI GTCTC 1 cut(s) 330
BstMBI GATC 6 cut(s) 801, 1383, 2081, 2251, 2323, 2836
BstMWI GCNNNNNNNGC 7 cut(s) 23, 491, 1211, 1879, 1910, 1922, 1952
BstNI CCWGG 6 cut(s) 114, 1992, 2220, 2295, 2406, 2724
BstNSI RCATGY 7 cut(s) 829, 1428, 1570, 1719, 1822, 2117, 2768
BstPAI GACNNNNGTC 1 cut(s) 2396
BstSCI CCNGG 6 cut(s) 112, 1990, 2218, 2293, 2404, 2722
BstSFI CTRYAG 2 cut(s) 1759, 2854
BstSLI GKGCMC 1 cut(s) 1998
BstV1I GCAGC 8 cut(s) 94, 324, 1080, 1531, 1624, 1900, 1942, 2378
BstV2I GAAGAC 1 cut(s) 1747
BstXI CCANNNNNNTGG 1 cut(s) 1163
Bsu36I CCTNAGG 1 cut(s) 597
BsuRI GGCC 6 cut(s) 1209, 1632, 1746, 2148, 2218, 2266
BtgI CCRYGG 3 cut(s) 1156, 2536, 2614
BtgZI GCGATG 1 cut(s) 441
BtrI CACGTC 1 cut(s) 2822
BtsIMutI CAGTG 4 cut(s) 1410, 2523, 2875, 3050
BveI ACCTGC 2 cut(s) 682, 2171
CciI TCATGA 1 cut(s) 1027
CfoI GCGC 3 cut(s) 11, 119, 2722
Cfr13I GGNCC 7 cut(s) 205, 990, 1208, 1279, 1744, 2146, 2309
CseI GACGC 2 cut(s) 2494, 2883
Csp6I GTAC 5 cut(s) 29, 60, 1519, 2051, 2611
CspCI CAANNNNNGTGG 2 cut(s) 2851, 2886
CviQI GTAC 5 cut(s) 29, 60, 1519, 2051, 2611
DpnI GATC 6 cut(s) 803, 1385, 2083, 2253, 2325, 2838
DpnII GATC 6 cut(s) 801, 1383, 2081, 2251, 2323, 2836
DraI TTTAAA 1 cut(s) 958
DrdI GACNNNNNNGTC 1 cut(s) 2594
DseDI GACNNNNNNGTC 1 cut(s) 2594
EaeI YGGCCR 1 cut(s) 1630
Eam1104I CTCTTC 3 cut(s) 93, 104, 283
EarI CTCTTC 3 cut(s) 93, 104, 283
Ecl136II GAGCTC 1 cut(s) 1904
Eco130I CCWWGG 8 cut(s) 1038, 1156, 1330, 2077, 2261, 2536, 2614, 3018
Eco147I AGGCCT 1 cut(s) 2218
Eco24I GRGCYC 2 cut(s) 933, 1906
Eco32I GATATC 1 cut(s) 1002
Eco47I GGWCC 4 cut(s) 205, 990, 1279, 2309
Eco53kI GAGCTC 1 cut(s) 1904
Eco57I CTGAAG 2 cut(s) 218, 2334
Eco72I CACGTG 1 cut(s) 1829
Eco81I CCTNAGG 1 cut(s) 597
Eco88I CYCGRG 1 cut(s) 2553
EcoICRI GAGCTC 1 cut(s) 1904
EcoO109I RGGNCCY 2 cut(s) 205, 1744
EcoRI GAATTC 2 cut(s) 642, 1245
EcoRII CCWGG 6 cut(s) 112, 1990, 2218, 2293, 2404, 2722
EcoRV GATATC 1 cut(s) 1002
EcoT14I CCWWGG 8 cut(s) 1038, 1156, 1330, 2077, 2261, 2536, 2614, 3018
EcoT22I ATGCAT 3 cut(s) 1538, 2345, 2531
EcoT38I GRGCYC 2 cut(s) 933, 1906
ErhI CCWWGG 8 cut(s) 1038, 1156, 1330, 2077, 2261, 2536, 2614, 3018
FalI AAGNNNNNCTT 6 cut(s) 938, 970, 1626, 1658, 2254, 2286
FaqI GGGAC 3 cut(s) 191, 746, 2404
FauI CCCGC 1 cut(s) 43
FauNDI CATATG 2 cut(s) 547, 1515
FbaI TGATCA 1 cut(s) 2323
FblI GTMKAC 2 cut(s) 301, 1077
Fnu4HI GCNGC 9 cut(s) 83, 313, 1069, 1545, 1638, 1914, 1956, 2267, 2367
FriOI GRGCYC 2 cut(s) 933, 1906
Fsp4HI GCNGC 9 cut(s) 83, 313, 1069, 1545, 1638, 1914, 1956, 2267, 2367
FspBI CTAG 3 cut(s) 189, 392, 1922
GlaI GCGC 3 cut(s) 10, 118, 2721
GluI GCNGC 9 cut(s) 83, 313, 1069, 1545, 1638, 1914, 1956, 2267, 2367
GsaI CCCAGC 2 cut(s) 1286, 2391
GsuI CTGGAG 1 cut(s) 2582
HaeIII GGCC 6 cut(s) 1209, 1632, 1746, 2148, 2218, 2266
HgaI GACGC 2 cut(s) 2494, 2883
HhaI GCGC 3 cut(s) 11, 119, 2722
Hin6I GCGC 3 cut(s) 9, 117, 2720
HinP1I GCGC 3 cut(s) 9, 117, 2720
HincII GTYRAC 3 cut(s) 1221, 1816, 2581
HindII GTYRAC 3 cut(s) 1221, 1816, 2581
HindIII AAGCTT 4 cut(s) 628, 1388, 1949, 2980
HpaI GTTAAC 1 cut(s) 2581
Hpy188I TCNGA 2 cut(s) 173, 503
Hpy99I CGWCG 1 cut(s) 2241
HpyAV CCTTC 4 cut(s) 242, 1757, 2481, 2905
HpyCH4IV ACGT 4 cut(s) 687, 1828, 2589, 2821
HpyF10VI GCNNNNNNNGC 7 cut(s) 23, 491, 1211, 1879, 1910, 1922, 1952
HpySE526I ACGT 4 cut(s) 687, 1828, 2589, 2821
HspAI GCGC 3 cut(s) 9, 117, 2720
KflI GGGWCCC 1 cut(s) 205
KpnI GGTACC 2 cut(s) 63, 2614
Ksp22I TGATCA 1 cut(s) 2323
KspAI GTTAAC 1 cut(s) 2581
Kzo9I GATC 6 cut(s) 801, 1383, 2081, 2251, 2323, 2836
LmnI GCTCC 6 cut(s) 228, 542, 970, 1541, 1879, 1901
Lsp1109I GCAGC 8 cut(s) 94, 324, 1080, 1531, 1624, 1900, 1942, 2378
LweI GCATC 9 cut(s) 446, 901, 1043, 1132, 1523, 1837, 1860, 2035, 2901
MaeI CTAG 3 cut(s) 189, 392, 1922
MaeII ACGT 4 cut(s) 687, 1828, 2589, 2821
MalI GATC 6 cut(s) 803, 1385, 2083, 2253, 2325, 2838
MboI GATC 6 cut(s) 801, 1383, 2081, 2251, 2323, 2836
MhlI GDGCHC 3 cut(s) 933, 1906, 1998
MlsI TGGCCA 1 cut(s) 1632
MluNI TGGCCA 1 cut(s) 1632
MmeI TCCRAC 6 cut(s) 447, 1280, 1317, 1857, 1956, 2797
Mox20I TGGCCA 1 cut(s) 1632
Mph1103I ATGCAT 3 cut(s) 1538, 2345, 2531
MroXI GAANNNNTTC 2 cut(s) 1778, 2227
MscI TGGCCA 1 cut(s) 1632
MslI CAYNNNNRTG 6 cut(s) 657, 1161, 1354, 1932, 2516, 2781
Msp20I TGGCCA 1 cut(s) 1632
MspA1I CMGCKG 1 cut(s) 1205
MspCI CTTAAG 1 cut(s) 2212
MspR9I CCNGG 6 cut(s) 114, 1992, 2220, 2295, 2406, 2724
Mva1269I GAATGC 6 cut(s) 1309, 1361, 1507, 2345, 2531, 2696
MvaI CCWGG 6 cut(s) 114, 1992, 2220, 2295, 2406, 2724
MwoI GCNNNNNNNGC 7 cut(s) 23, 491, 1211, 1879, 1910, 1922, 1952
NcoI CCATGG 3 cut(s) 1156, 2536, 2614
NdeI CATATG 2 cut(s) 547, 1515
NdeII GATC 6 cut(s) 801, 1383, 2081, 2251, 2323, 2836
NmeAIII GCCGAG 1 cut(s) 1099
NmuCI GTSAC 6 cut(s) 394, 889, 1721, 2002, 2116, 2570
NsiI ATGCAT 3 cut(s) 1538, 2345, 2531
NspI RCATGY 7 cut(s) 829, 1428, 1570, 1719, 1822, 2117, 2768
OliI CACNNNNGTG 1 cut(s) 2516
PaeI GCATGC 2 cut(s) 829, 2768
PagI TCATGA 1 cut(s) 1027
PaqCI CACCTGC 1 cut(s) 2171
PceI AGGCCT 1 cut(s) 2218
PciI ACATGT 1 cut(s) 1566
PcsI WCGNNNNNNNCGW 1 cut(s) 2906
PctI GAATGC 6 cut(s) 1309, 1361, 1507, 2345, 2531, 2696
PdmI GAANNNNTTC 2 cut(s) 1778, 2227
PkrI GCNGC 9 cut(s) 84, 314, 1070, 1546, 1639, 1915, 1957, 2268, 2368
PmaCI CACGTG 1 cut(s) 1829
PmlI CACGTG 1 cut(s) 1829
Ppu21I YACGTR 1 cut(s) 1829
PpuMI RGGWCCY 1 cut(s) 205
PscI ACATGT 1 cut(s) 1566
PshAI GACNNNNGTC 1 cut(s) 2396
Psp124BI GAGCTC 1 cut(s) 1906
Psp5II RGGWCCY 1 cut(s) 205
Psp6I CCWGG 6 cut(s) 112, 1990, 2218, 2293, 2404, 2722
PspCI CACGTG 1 cut(s) 1829
PspFI CCCAGC 2 cut(s) 1282, 2387
PspGI CCWGG 6 cut(s) 112, 1990, 2218, 2293, 2404, 2722
PspPI GGNCC 7 cut(s) 205, 990, 1208, 1279, 1744, 2146, 2309
PspPPI RGGWCCY 1 cut(s) 205
PvuII CAGCTG 1 cut(s) 1205
RsaI GTAC 5 cut(s) 30, 61, 1520, 2052, 2612
RsaNI GTAC 5 cut(s) 29, 60, 1519, 2051, 2611
RseI CAYNNNNRTG 6 cut(s) 657, 1161, 1354, 1932, 2516, 2781
SacI GAGCTC 1 cut(s) 1906
SatI GCNGC 9 cut(s) 83, 313, 1069, 1545, 1638, 1914, 1956, 2267, 2367
Sau3AI GATC 6 cut(s) 801, 1383, 2081, 2251, 2323, 2836
Sau96I GGNCC 7 cut(s) 205, 990, 1208, 1279, 1744, 2146, 2309
ScrFI CCNGG 6 cut(s) 114, 1992, 2220, 2295, 2406, 2724
SduI GDGCHC 3 cut(s) 933, 1906, 1998
SfaNI GCATC 9 cut(s) 446, 901, 1043, 1132, 1523, 1837, 1860, 2035, 2901
SfcI CTRYAG 2 cut(s) 1759, 2854
SinI GGWCC 4 cut(s) 205, 990, 1279, 2309
SmiMI CAYNNNNRTG 6 cut(s) 657, 1161, 1354, 1932, 2516, 2781
SmlI CTYRAG 4 cut(s) 604, 625, 1643, 2212
SmoI CTYRAG 4 cut(s) 604, 625, 1643, 2212
SphI GCATGC 2 cut(s) 829, 2768
SseBI AGGCCT 1 cut(s) 2218
SsiI CCGC 5 cut(s) 36, 80, 103, 2203, 2267
SspMI CTAG 3 cut(s) 189, 392, 1922
SstI GAGCTC 1 cut(s) 1906
StuI AGGCCT 1 cut(s) 2218
StyD4I CCNGG 6 cut(s) 112, 1990, 2218, 2293, 2404, 2722
StyI CCWWGG 8 cut(s) 1038, 1156, 1330, 2077, 2261, 2536, 2614, 3018
TaiI ACGT 4 cut(s) 690, 1831, 2592, 2824
TaqI TCGA 2 cut(s) 843, 1479
TaqII GACCGA 1 cut(s) 2168
TatI WGTACW 3 cut(s) 28, 1518, 2050
TauI GCSGC 1 cut(s) 2269
TscAI CASTG 4 cut(s) 1417, 2523, 2875, 3050
TseFI GTSAC 6 cut(s) 394, 889, 1721, 2002, 2116, 2570
TseI GCWGC 8 cut(s) 82, 312, 1068, 1544, 1637, 1913, 1955, 2366
Tsp45I GTSAC 6 cut(s) 394, 889, 1721, 2002, 2116, 2570
TspRI CASTG 4 cut(s) 1417, 2523, 2875, 3050
Vha464I CTTAAG 1 cut(s) 2212
VpaK11BI GGWCC 4 cut(s) 205, 990, 1279, 2309
XapI RAATTY 4 cut(s) 642, 862, 1245, 1449
XceI RCATGY 7 cut(s) 829, 1428, 1570, 1719, 1822, 2117, 2768
XmiI GTMKAC 2 cut(s) 301, 1077
XmnI GAANNNNTTC 2 cut(s) 1778, 2227
XspI CTAG 3 cut(s) 189, 392, 1922
Zsp2I ATGCAT 3 cut(s) 1538, 2345, 2531
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.