Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006508

Physical Location & Seq

Genomic Coordinates Reverse (-)

72878940 .. 72879693

Gene Structure 754 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ34253

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGAGGCTAAAAGTACTGATCCTCAGAATTTCTCAACCAAATCCGGATTCCCAGCCTGGATTCGCCGGATTCGCAGCCTCCCTTCGCCGGCTTCGCAGCCTCGTGTTCCCTCCCTTTGCCGGATTCACAGCCTCCCTTTGCCGGTTGCTTCGCCGGATTCGCAGCCTCCCTTCGCCGGTTGCTTCGCTTGATTCGCAGCCTCCCTTCACGGGTCGCTTCGCCGGATTCGCAGCCTCCTTTCTCCTGCTTCACAGCCTCGATTCGCTGGTTGCTTTGCAGCCTTGCTTCGCCGCCTCACTTCACCGGCTTCGCAGCCTTGCTTCACCGGATTCACAGCCTCCCTTCGCCGGATTCGCAGCCTCCCTTCGCCGGTTGCTTCGCCGCCTCGATCTGCTAGCTGCTTCGTCTCTTACCTTCGTCGGAGCCCTAGATCGATTTAGGGAGGATTTGGATTTTGGGATGGTTTCGATTGGGAACCGATCTGATTTTGGGAGAAATGGGTTATTTATTGGTAAAAAGCTCAAAAATGTACTGAAGCTCAGATCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

182

Amino Acids

19.96

Weight (kDa)

11.8

Isoelectric Point (pI)

69.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006508)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25740 AT3G25740 AT4G37040
fragaria_vesca	FvH4_1g15810 FvH4_1g15810 FvH4_1g15810 FvH4_1g15810 FvH4_1g15810 FvH4_1g15810
malus_domestica	MD00G1045000.v1.1 MD02G1169900.v1.1
prunus_persica	Prupe.7G135200_v2.0.a1 Prupe.7G135300_v2.0.a1
pyrus_communis	pycom02g13680
rosa_chinensis	RchiOBHm_Chr2g0105091 RchiOBHm_Chr5g0066781
rosa_laevigata	RLG00000017402
rosa_multiflora	Rmu_sc0005160.1_g000008
rosa_roxburghii	Rroxscaffold_2G00138430
rosa_rugosa	Rorug02G0126300
rosa_samantha	Rh2AG177000 Rh2AG177100 Rh2BG185100 Rh2CG181400 Rh2DG183200
rosa_wichuraiana	Rw2G013890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	43
AciI	CCGC	2 cut(s)	291, 382
AclWI	GGATC	1 cut(s)	13
AcsI	RAATTY	1 cut(s)	27
AfaI	GTAC	2 cut(s)	15, 531
AfiI	CCNNNNNNNGG	7 cut(s)	87, 119, 141, 175, 209, 347, 369
AjnI	CCWGG	1 cut(s)	55
AjuI	GAANNNNNNNTTGG	2 cut(s)	31, 63
AluBI	AGCT	3 cut(s)	398, 520, 538
AluI	AGCT	3 cut(s)	398, 520, 538
Alw26I	GTCTC	1 cut(s)	411
AlwI	GGATC	1 cut(s)	13
Aor13HI	TCCGGA	1 cut(s)	43
ApeKI	GCWGC	9 cut(s)	74, 96, 162, 196, 230, 277, 312, 356, 398
ApoI	RAATTY	1 cut(s)	27
AsuHPI	GGTGA	2 cut(s)	293, 315
AsuNHI	GCTAGC	1 cut(s)	394
BanII	GRGCYC	1 cut(s)	427
BauI	CACGAG	1 cut(s)	101
BbvI	GCAGC	9 cut(s)	86, 108, 174, 208, 242, 289, 324, 368, 385
BccI	CCATC	1 cut(s)	454
BciT130I	CCWGG	1 cut(s)	57
BcoDI	GTCTC	1 cut(s)	411
BfaI	CTAG	2 cut(s)	395, 428
BglII	AGATCT	1 cut(s)	542
BmcAI	AGTACT	1 cut(s)	15
Bme1390I	CCNGG	1 cut(s)	57
BmiI	GGNNCC	2 cut(s)	424, 476
BmrFI	CCNGG	1 cut(s)	57
BmtI	GCTAGC	1 cut(s)	398
Bsa29I	ATCGAT	1 cut(s)	433
BsaWI	WCCGGW	2 cut(s)	43, 325
Bsc4I	CCNNNNNNNGG	7 cut(s)	87, 119, 141, 175, 209, 347, 369
Bse118I	RCCGGY	5 cut(s)	87, 141, 175, 303, 369
BseAI	TCCGGA	1 cut(s)	43
BseBI	CCWGG	1 cut(s)	57
BseCI	ATCGAT	1 cut(s)	433
BseGI	GGATG	1 cut(s)	465
BseLI	CCNNNNNNNGG	7 cut(s)	87, 119, 141, 175, 209, 347, 369
BseMII	CTCAG	1 cut(s)	37
BseXI	GCAGC	9 cut(s)	86, 108, 174, 208, 242, 289, 324, 368, 385
BseYI	CCCAGC	1 cut(s)	51
BshVI	ATCGAT	1 cut(s)	433
BslI	CCNNNNNNNGG	7 cut(s)	87, 119, 141, 175, 209, 347, 369
BsmAI	GTCTC	1 cut(s)	411
BsmBI	CGTCTC	1 cut(s)	411
Bsp1286I	GDGCHC	1 cut(s)	427
Bsp13I	TCCGGA	1 cut(s)	43
Bsp143I	GATC	5 cut(s)	18, 388, 430, 479, 542
BspACI	CCGC	2 cut(s)	291, 382
BspCNI	CTCAG	1 cut(s)	36
BspDI	ATCGAT	1 cut(s)	433
BspEI	TCCGGA	1 cut(s)	43
BspLI	GGNNCC	2 cut(s)	424, 476
BspOI	GCTAGC	1 cut(s)	398
BspPI	GGATC	1 cut(s)	13
BsrFI	RCCGGY	5 cut(s)	87, 141, 175, 303, 369
BssAI	RCCGGY	5 cut(s)	87, 141, 175, 303, 369
BssMI	GATC	5 cut(s)	18, 388, 430, 479, 542
BssSI	CACGAG	1 cut(s)	101
Bst2BI	CACGAG	1 cut(s)	101
Bst2UI	CCWGG	1 cut(s)	57
BstC8I	GCNNGC	2 cut(s)	89, 396
BstDEI	CTNAG	3 cut(s)	23, 539, 546
BstF5I	GGATG	1 cut(s)	465
BstKTI	GATC	5 cut(s)	21, 391, 433, 482, 545
BstMAI	GTCTC	1 cut(s)	411
BstMBI	GATC	5 cut(s)	18, 388, 430, 479, 542
BstMWI	GCNNNNNNNGC	6 cut(s)	71, 93, 159, 193, 227, 353
BstNI	CCWGG	1 cut(s)	57
BstSCI	CCNGG	1 cut(s)	55
BstV1I	GCAGC	9 cut(s)	86, 108, 174, 208, 242, 289, 324, 368, 385
BstX2I	RGATCY	1 cut(s)	542
BstYI	RGATCY	1 cut(s)	542
Bsu15I	ATCGAT	1 cut(s)	433
BsuTUI	ATCGAT	1 cut(s)	433
BtsCI	GGATG	1 cut(s)	465
Cac8I	GCNNGC	2 cut(s)	89, 396
Cfr10I	RCCGGY	5 cut(s)	87, 141, 175, 303, 369
ClaI	ATCGAT	1 cut(s)	433
Csp6I	GTAC	2 cut(s)	14, 530
CviQI	GTAC	2 cut(s)	14, 530
DdeI	CTNAG	3 cut(s)	23, 539, 546
DpnI	GATC	5 cut(s)	20, 390, 432, 481, 544
DpnII	GATC	5 cut(s)	18, 388, 430, 479, 542
Eco24I	GRGCYC	1 cut(s)	427
EcoRII	CCWGG	1 cut(s)	55
EcoT38I	GRGCYC	1 cut(s)	427
Esp3I	CGTCTC	1 cut(s)	411
FokI	GGATG	1 cut(s)	472
FriOI	GRGCYC	1 cut(s)	427
FspBI	CTAG	2 cut(s)	395, 428
GsaI	CCCAGC	1 cut(s)	55
HphI	GGTGA	2 cut(s)	293, 315
Hpy188I	TCNGA	4 cut(s)	26, 422, 484, 542
Hpy188III	TCNNGA	1 cut(s)	44
Hpy99I	CGWCG	1 cut(s)	422
HpyAV	CCTTC	6 cut(s)	92, 180, 214, 352, 374, 424
HpyCH4V	TGCA	1 cut(s)	277
HpyF10VI	GCNNNNNNNGC	6 cut(s)	71, 93, 159, 193, 227, 353
HpyF3I	CTNAG	3 cut(s)	23, 539, 546
Kpn2I	TCCGGA	1 cut(s)	43
KroI	GCCGGC	1 cut(s)	87
KroNI	GCCGGC	1 cut(s)	89
Kzo9I	GATC	5 cut(s)	18, 388, 430, 479, 542
LmnI	GCTCC	1 cut(s)	422
Lsp1109I	GCAGC	9 cut(s)	86, 108, 174, 208, 242, 289, 324, 368, 385
MaeI	CTAG	2 cut(s)	395, 428
MalI	GATC	5 cut(s)	20, 390, 432, 481, 544
MboI	GATC	5 cut(s)	18, 388, 430, 479, 542
MflI	RGATCY	1 cut(s)	542
MhlI	GDGCHC	1 cut(s)	427
MluCI	AATT	1 cut(s)	27
MmeI	TCCRAC	1 cut(s)	400
MroI	TCCGGA	1 cut(s)	43
MroNI	GCCGGC	1 cut(s)	87
MspR9I	CCNGG	1 cut(s)	57
MvaI	CCWGG	1 cut(s)	57
MwoI	GCNNNNNNNGC	6 cut(s)	71, 93, 159, 193, 227, 353
NaeI	GCCGGC	1 cut(s)	89
NdeII	GATC	5 cut(s)	18, 388, 430, 479, 542
NgoMIV	GCCGGC	1 cut(s)	87
NheI	GCTAGC	1 cut(s)	394
NlaIV	GGNNCC	2 cut(s)	424, 476
PdiI	GCCGGC	1 cut(s)	89
Psp6I	CCWGG	1 cut(s)	55
PspFI	CCCAGC	1 cut(s)	51
PspGI	CCWGG	1 cut(s)	55
PspN4I	GGNNCC	2 cut(s)	424, 476
PsuI	RGATCY	1 cut(s)	542
RsaI	GTAC	2 cut(s)	15, 531
RsaNI	GTAC	2 cut(s)	14, 530
Sau3AI	GATC	5 cut(s)	18, 388, 430, 479, 542
ScaI	AGTACT	1 cut(s)	15
ScrFI	CCNGG	1 cut(s)	57
SduI	GDGCHC	1 cut(s)	427
SetI	ASST	4 cut(s)	400, 416, 522, 540
Sse9I	AATT	1 cut(s)	27
SsiI	CCGC	2 cut(s)	291, 382
SspMI	CTAG	2 cut(s)	395, 428
StyD4I	CCNGG	1 cut(s)	55
TaqI	TCGA	4 cut(s)	258, 387, 433, 467
TasI	AATT	1 cut(s)	27
TatI	WGTACW	2 cut(s)	13, 529
TauI	GCSGC	2 cut(s)	293, 384
TseI	GCWGC	9 cut(s)	74, 96, 162, 196, 230, 277, 312, 356, 398
XapI	RAATTY	1 cut(s)	27
XspI	CTAG	2 cut(s)	395, 428
ZrmI	AGTACT	1 cut(s)	15

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.