Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0006508

Physical Location & Seq

Genomic Coordinates Reverse (-)

16869281 .. 16873635

Gene Structure 4355 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG177000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGGTGAGTTATATTTTTCTTCATCTTAATTCTCGCACAGGAAGCAAGCATGTCACTATGCAGTTATCCAGAGGATTTTCGGGCCTGACCGACCTCTTGTTCAATGGAAGAAATGCAGGTGAAGTGCTAAATGCCAAGCGGAAACGCTTAAGGCCTGGAAAAGTTTCACCTCGTCGCCCTGTTCCAGATCATATACCAAGGCCGCCTTATGTAAAATCTAAAAAACCGCCTGGAATTGCGAGTGGACCTGAAGTGCATGATCATGAGGGAATAGAATGCATGAGAGCTTCTGGGAGGCTTGCAGCACAGGTTCTTGAATATGCTGGGACTTTGGTCAAGCCAGGCATAAAGACTGATGAAATTGACCAAGCTGTTCACCAAATGATAATTGATAATGGGGCCTACCCTTCACCACTTGGCTATGGTGGATTTCCAAAGAGCGTCTGCACATCAGTGAATGAATGCATTTGCCATGGAATACCAGATTCCCGAGAACTGGAGGATGGTGACATAGTTAACATTGATGTCACAGTCTATTTGAATGGGTACCATGGCGATACATCAAAAACTTTCTTTTGTGGAGATGTTGATGATGCAGGCAGAAACTTAGTTCAGGTAACTAAGGAATGCCTTGACAAAGCAATATCAATTTGTGCACCTGGCGTGGAGTTCAAGAAAATTGGCAGAACAATCCAAGAGCATGCAGATAAACATCGTTATGGTGTTGTTAGACAGTTCGTTGGGCATGGTGTTGGACGCGTCTTTCATGCTGATCCAGTTGTTTTGCACTACAGAAACAATGACAGTGGACGCATGGTGTTAAATCAAACCTTCACAATAGAACCCATGCTAACGATTGGTAGCTATAATCCTGTAATGTGGGACGATGATTGGACAGTTGTTACAGAAGATGGAAGCTTATCAGCACAGTTTGAACATACTATCTTAATAACCAAGGATGGGGCTGAGATACTAACTCAGTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0019538 GO:0031365 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071704 GO:0097305 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M24

Protein Analysis

328

Amino Acids

36.15

Weight (kDa)

6.53

Isoelectric Point (pI)

33.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M24	PF00557	92 - 319	2.2e-53	Metallopeptidase family M24

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006508)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25740 AT3G25740 AT4G37040
fragaria_vesca	FvH4_1g15810 FvH4_1g15810 FvH4_1g15810 FvH4_1g15810 FvH4_1g15810 FvH4_1g15810
malus_domestica	MD00G1045000.v1.1 MD02G1169900.v1.1
prunus_persica	Prupe.7G135200_v2.0.a1 Prupe.7G135300_v2.0.a1
pyrus_communis	pycom02g13680
rosa_chinensis	RchiOBHm_Chr2g0105091 RchiOBHm_Chr5g0066781
rosa_laevigata	RLG00000017402
rosa_multiflora	Rmu_sc0005160.1_g000008
rosa_roxburghii	Rroxscaffold_2G00138430
rosa_rugosa	Rorug02G0126300
rosa_samantha	Rh2AG177000 Rh2AG177100 Rh2BG185100 Rh2CG181400 Rh2DG183200
rosa_wichuraiana	Rw2G013890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	107
Acc36I	ACCTGC	1 cut(s)	107
Acc65I	GGTACC	1 cut(s)	546
AccB1I	GGYRCC	1 cut(s)	546
AccII	CGCG	1 cut(s)	759
AciI	CCGC	3 cut(s)	139, 203, 227
AclWI	GGATC	1 cut(s)	767
AcuI	CTGAAG	1 cut(s)	270
AfaI	GTAC	1 cut(s)	548
AfiI	CCNNNNNNNGG	2 cut(s)	496, 960
AflII	CTTAAG	1 cut(s)	148
AflIII	ACRYGT	1 cut(s)	757
AgsI	TTSAA	5 cut(s)	103, 317, 541, 673, 935
AjnI	CCWGG	4 cut(s)	154, 229, 340, 658
AleI	CACNNNNGTG	1 cut(s)	452
AluBI	AGCT	4 cut(s)	287, 371, 864, 918
AluI	AGCT	4 cut(s)	287, 371, 864, 918
Alw21I	GWGCWC	1 cut(s)	658
Alw44I	GTGCAC	1 cut(s)	654
AlwI	GGATC	1 cut(s)	767
Ama87I	CYCGRG	1 cut(s)	489
AoxI	GGCC	4 cut(s)	82, 152, 200, 399
ApaLI	GTGCAC	1 cut(s)	654
ApeKI	GCWGC	1 cut(s)	302
Asp700I	GAANNNNTTC	1 cut(s)	163
Asp718I	GGTACC	1 cut(s)	546
AspS9I	GGNCC	3 cut(s)	82, 245, 399
AsuHPI	GGTGA	6 cut(s)	16, 131, 159, 368, 402, 518
AvaI	CYCGRG	1 cut(s)	489
AvaII	GGWCC	1 cut(s)	245
BaeGI	GKGCMC	1 cut(s)	658
BanI	GGYRCC	1 cut(s)	546
Bbv12I	GWGCWC	1 cut(s)	658
BbvI	GCAGC	1 cut(s)	314
BccI	CCATC	3 cut(s)	497, 905, 953
BciT130I	CCWGG	4 cut(s)	156, 231, 342, 660
BclI	TGATCA	1 cut(s)	259
BfmI	CTRYAG	1 cut(s)	790
BfrI	CTTAAG	1 cut(s)	148
BfuAI	ACCTGC	1 cut(s)	107
BisI	GCNGC	2 cut(s)	203, 303
BlsI	GCNGC	2 cut(s)	204, 304
Bme1390I	CCNGG	4 cut(s)	156, 231, 342, 660
Bme18I	GGWCC	1 cut(s)	245
BmeT110I	CYCGRG	1 cut(s)	489
BmgT120I	GGNCC	3 cut(s)	82, 245, 399
BmiI	GGNNCC	2 cut(s)	400, 548
BmrFI	CCNGG	4 cut(s)	156, 231, 342, 660
BmsI	GCATC	1 cut(s)	583
BoxI	GACNNNNGTC	1 cut(s)	332
BpmI	CTGGAG	1 cut(s)	518
BsaBI	GATNNNNATC	1 cut(s)	711
BsaJI	CCNNGG	4 cut(s)	197, 472, 550, 954
Bsc4I	CCNNNNNNNGG	2 cut(s)	496, 960
Bse1I	ACTGG	2 cut(s)	501, 776
Bse8I	GATNNNNATC	1 cut(s)	711
BseBI	CCWGG	4 cut(s)	156, 231, 342, 660
BseDI	CCNNGG	4 cut(s)	197, 472, 550, 954
BseGI	GGATG	2 cut(s)	508, 964
BseJI	GATNNNNATC	1 cut(s)	711
BseLI	CCNNNNNNNGG	2 cut(s)	496, 960
BseMII	CTCAG	1 cut(s)	957
BseNI	ACTGG	2 cut(s)	501, 776
BseSI	GKGCMC	1 cut(s)	658
BseXI	GCAGC	1 cut(s)	314
BseYI	CCCAGC	1 cut(s)	323
BsgI	GTGCAG	1 cut(s)	430
Bsh1236I	CGCG	1 cut(s)	759
BshFI	GGCC	4 cut(s)	84, 154, 202, 401
BshNI	GGYRCC	1 cut(s)	546
BsiHKAI	GWGCWC	1 cut(s)	658
BsiHKCI	CYCGRG	1 cut(s)	489
BslFI	GGGAC	2 cut(s)	340, 896
BslI	CCNNNNNNNGG	2 cut(s)	496, 960
BsmFI	GGGAC	2 cut(s)	340, 896
BsmI	GAATGC	3 cut(s)	281, 467, 632
BsnI	GGCC	4 cut(s)	84, 154, 202, 401
BsoBI	CYCGRG	1 cut(s)	489
Bsp1286I	GDGCHC	1 cut(s)	658
Bsp143I	GATC	3 cut(s)	187, 259, 772
Bsp19I	CCATGG	2 cut(s)	472, 550
BspACI	CCGC	3 cut(s)	139, 203, 227
BspANI	GGCC	4 cut(s)	84, 154, 202, 401
BspCNI	CTCAG	1 cut(s)	958
BspFNI	CGCG	1 cut(s)	759
BspHI	TCATGA	1 cut(s)	262
BspLI	GGNNCC	2 cut(s)	400, 548
BspMI	ACCTGC	1 cut(s)	107
BspPI	GGATC	1 cut(s)	767
BspT107I	GGYRCC	1 cut(s)	546
BspTI	CTTAAG	1 cut(s)	148
BsrI	ACTGG	2 cut(s)	501, 776
BssECI	CCNNGG	4 cut(s)	197, 472, 550, 954
BssMI	GATC	3 cut(s)	187, 259, 772
BssT1I	CCWWGG	4 cut(s)	197, 472, 550, 954
Bst2UI	CCWGG	4 cut(s)	156, 231, 342, 660
Bst4CI	ACNGT	5 cut(s)	532, 735, 806, 898, 930
BstAFI	CTTAAG	1 cut(s)	148
BstC8I	GCNNGC	4 cut(s)	47, 300, 598, 702
BstDEI	CTNAG	4 cut(s)	607, 621, 966, 978
BstDSI	CCRYGG	2 cut(s)	472, 550
BstF5I	GGATG	2 cut(s)	508, 964
BstFNI	CGCG	1 cut(s)	759
BstKTI	GATC	3 cut(s)	190, 262, 775
BstMBI	GATC	3 cut(s)	187, 259, 772
BstMWI	GCNNNNNNNGC	1 cut(s)	42
BstNI	CCWGG	4 cut(s)	156, 231, 342, 660
BstNSI	RCATGY	2 cut(s)	53, 704
BstPAI	GACNNNNGTC	1 cut(s)	332
BstSCI	CCNGG	4 cut(s)	154, 229, 340, 658
BstSFI	CTRYAG	1 cut(s)	790
BstSLI	GKGCMC	1 cut(s)	658
BstUI	CGCG	1 cut(s)	759
BstV1I	GCAGC	1 cut(s)	314
BsuRI	GGCC	4 cut(s)	84, 154, 202, 401
BtgI	CCRYGG	2 cut(s)	472, 550
BtsCI	GGATG	2 cut(s)	508, 964
BtsIMutI	CAGTG	3 cut(s)	459, 811, 986
BveI	ACCTGC	1 cut(s)	107
Cac8I	GCNNGC	4 cut(s)	47, 300, 598, 702
CciI	TCATGA	1 cut(s)	262
Cfr13I	GGNCC	3 cut(s)	82, 245, 399
CseI	GACGC	4 cut(s)	430, 748, 765, 819
Csp6I	GTAC	1 cut(s)	547
CspCI	CAANNNNNGTGG	2 cut(s)	787, 822
CviQI	GTAC	1 cut(s)	547
DdeI	CTNAG	4 cut(s)	607, 621, 966, 978
DpnI	GATC	3 cut(s)	189, 261, 774
DpnII	GATC	3 cut(s)	187, 259, 772
Eco130I	CCWWGG	4 cut(s)	197, 472, 550, 954
Eco147I	AGGCCT	1 cut(s)	154
Eco47I	GGWCC	1 cut(s)	245
Eco57I	CTGAAG	1 cut(s)	270
Eco88I	CYCGRG	1 cut(s)	489
EcoO109I	RGGNCCY	1 cut(s)	399
EcoRII	CCWGG	4 cut(s)	154, 229, 340, 658
EcoT14I	CCWWGG	4 cut(s)	197, 472, 550, 954
EcoT22I	ATGCAT	2 cut(s)	281, 467
ErhI	CCWWGG	4 cut(s)	197, 472, 550, 954
FalI	AAGNNNNNCTT	2 cut(s)	190, 222
FaqI	GGGAC	2 cut(s)	340, 896
FbaI	TGATCA	1 cut(s)	259
Fnu4HI	GCNGC	2 cut(s)	203, 303
FokI	GGATG	2 cut(s)	515, 971
Fsp4HI	GCNGC	2 cut(s)	203, 303
GluI	GCNGC	2 cut(s)	203, 303
GsaI	CCCAGC	1 cut(s)	327
GsuI	CTGGAG	1 cut(s)	518
HaeIII	GGCC	4 cut(s)	84, 154, 202, 401
HgaI	GACGC	4 cut(s)	430, 748, 765, 819
HincII	GTYRAC	1 cut(s)	517
HindII	GTYRAC	1 cut(s)	517
HindIII	AAGCTT	1 cut(s)	916
HinfI	GANTC	1 cut(s)	485
HpaI	GTTAAC	1 cut(s)	517
HphI	GGTGA	6 cut(s)	16, 131, 159, 368, 402, 518
Hpy166II	GTNNAC	5 cut(s)	245, 376, 517, 656, 809
Hpy188III	TCNNGA	6 cut(s)	69, 185, 263, 314, 489, 673
Hpy8I	GTNNAC	5 cut(s)	245, 376, 517, 656, 809
Hpy99I	CGWCG	1 cut(s)	177
HpyAV	CCTTC	2 cut(s)	417, 841
HpyCH4III	ACNGT	5 cut(s)	532, 735, 806, 898, 930
HpyF10VI	GCNNNNNNNGC	1 cut(s)	42
HpyF3I	CTNAG	4 cut(s)	607, 621, 966, 978
KpnI	GGTACC	1 cut(s)	550
Ksp22I	TGATCA	1 cut(s)	259
KspAI	GTTAAC	1 cut(s)	517
Kzo9I	GATC	3 cut(s)	187, 259, 772
Lsp1109I	GCAGC	1 cut(s)	314
LweI	GCATC	1 cut(s)	583
MaeIII	GTNAC	5 cut(s)	52, 506, 526, 616, 901
MalI	GATC	3 cut(s)	189, 261, 774
MboI	GATC	3 cut(s)	187, 259, 772
MboII	GAAGA	3 cut(s)	11, 120, 920
MhlI	GDGCHC	1 cut(s)	658
MluCI	AATT	6 cut(s)	28, 234, 360, 387, 648, 678
MluI	ACGCGT	1 cut(s)	757
MmeI	TCCRAC	1 cut(s)	733
MnlI	CCTC	6 cut(s)	65, 104, 180, 259, 288, 493
Mph1103I	ATGCAT	2 cut(s)	281, 467
MroXI	GAANNNNTTC	1 cut(s)	163
MseI	TTAA	5 cut(s)	27, 149, 516, 821, 947
MslI	CAYNNNNRTG	3 cut(s)	261, 452, 717
MspCI	CTTAAG	1 cut(s)	148
MspR9I	CCNGG	4 cut(s)	156, 231, 342, 660
Mva1269I	GAATGC	3 cut(s)	281, 467, 632
MvaI	CCWGG	4 cut(s)	156, 231, 342, 660
MvnI	CGCG	1 cut(s)	759
MwoI	GCNNNNNNNGC	1 cut(s)	42
NcoI	CCATGG	2 cut(s)	472, 550
NdeII	GATC	3 cut(s)	187, 259, 772
NlaIV	GGNNCC	2 cut(s)	400, 548
NmuCI	GTSAC	3 cut(s)	52, 506, 526
NsiI	ATGCAT	2 cut(s)	281, 467
NspI	RCATGY	2 cut(s)	53, 704
OliI	CACNNNNGTG	1 cut(s)	452
PaeI	GCATGC	1 cut(s)	704
PagI	TCATGA	1 cut(s)	262
PaqCI	CACCTGC	1 cut(s)	107
PceI	AGGCCT	1 cut(s)	154
PctI	GAATGC	3 cut(s)	281, 467, 632
PdmI	GAANNNNTTC	1 cut(s)	163
PfeI	GAWTC	1 cut(s)	485
PkrI	GCNGC	2 cut(s)	204, 304
PshAI	GACNNNNGTC	1 cut(s)	332
Psp6I	CCWGG	4 cut(s)	154, 229, 340, 658
PspFI	CCCAGC	1 cut(s)	323
PspGI	CCWGG	4 cut(s)	154, 229, 340, 658
PspN4I	GGNNCC	2 cut(s)	400, 548
PspPI	GGNCC	3 cut(s)	82, 245, 399
RsaI	GTAC	1 cut(s)	548
RsaNI	GTAC	1 cut(s)	547
RseI	CAYNNNNRTG	3 cut(s)	261, 452, 717
SaqAI	TTAA	5 cut(s)	27, 149, 516, 821, 947
SatI	GCNGC	2 cut(s)	203, 303
Sau3AI	GATC	3 cut(s)	187, 259, 772
Sau96I	GGNCC	3 cut(s)	82, 245, 399
ScrFI	CCNGG	4 cut(s)	156, 231, 342, 660
SduI	GDGCHC	1 cut(s)	658
SfaNI	GCATC	1 cut(s)	583
SfcI	CTRYAG	1 cut(s)	790
SinI	GGWCC	1 cut(s)	245
SmiMI	CAYNNNNRTG	3 cut(s)	261, 452, 717
SmlI	CTYRAG	1 cut(s)	148
SmoI	CTYRAG	1 cut(s)	148
SphI	GCATGC	1 cut(s)	704
Sse9I	AATT	6 cut(s)	28, 234, 360, 387, 648, 678
SseBI	AGGCCT	1 cut(s)	154
SsiI	CCGC	3 cut(s)	139, 203, 227
StuI	AGGCCT	1 cut(s)	154
StyD4I	CCNGG	4 cut(s)	154, 229, 340, 658
StyI	CCWWGG	4 cut(s)	197, 472, 550, 954
TaaI	ACNGT	5 cut(s)	532, 735, 806, 898, 930
TaqII	GACCGA	1 cut(s)	104
TasI	AATT	6 cut(s)	28, 234, 360, 387, 648, 678
TauI	GCSGC	1 cut(s)	205
TfiI	GAWTC	1 cut(s)	485
Tru1I	TTAA	5 cut(s)	27, 149, 516, 821, 947
Tru9I	TTAA	5 cut(s)	27, 149, 516, 821, 947
TscAI	CASTG	3 cut(s)	459, 811, 986
TseFI	GTSAC	3 cut(s)	52, 506, 526
TseI	GCWGC	1 cut(s)	302
Tsp45I	GTSAC	3 cut(s)	52, 506, 526
TspDTI	ATGAA	4 cut(s)	11, 372, 474, 755
TspRI	CASTG	3 cut(s)	459, 811, 986
Vha464I	CTTAAG	1 cut(s)	148
VneI	GTGCAC	1 cut(s)	654
VpaK11BI	GGWCC	1 cut(s)	245
XceI	RCATGY	2 cut(s)	53, 704
XmnI	GAANNNNTTC	1 cut(s)	163
Zsp2I	ATGCAT	2 cut(s)	281, 467

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.