Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0006508

Physical Location & Seq

Genomic Coordinates Reverse (-)

15095954 .. 15103756

Gene Structure 7803 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G013890.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGGTGAGCGCAAGTGCAATGCGTGCTGTACAACCCGCAATCCTCTCCTCCTTTGTGGGTACCCACCTGCTTCACTCACCGCAGCCTCTTCACCAACTCTTCCGCTACAACCCAGGAAGCAAGCATGTCACTATGCAGTTATCCAGAGGATTTTCGGGCCTGACCGACCTCTTGTTCAATGGAAGAAATGCAGGTGAAGTTCTAAATGTCAAGCGGAAACGCTTAAGGCCTGGAAAAGTTTCACCTCGTCGCCCTGTTCCAGATCATATACCAAGGCCACCTTATATAAAATCTAAAAAACCGCCTGGAATTGCGAGTGGACCTGAAGTGCATGATCATGAGGGAATAGAATGCATGAGAGCTTCTGGGAGGCTTGCAGCACAGGTTCTTGAATATGCTGGGACTTTGGTCAAGCCAGGCATAAAGACTGATGAAATTGACCAAGCTGTTCACCAAATGATAATTGATAATGGGGCCTACCCTTCACCACTTGGCTATGGTGGATTTCCAAAGAGCGTCTGCACATCAGTGAATGAATGCATTTGCCATGGAATACCAGATTCCCGAGAACTGGAGGATGGTGACATAGTTAACATTGATGTCACAGTCTATTTGAATGGGTACCATGGCGATACATCAAAAACTTTCTTTTGTGGAGATGTTGATGATGCAGGCAGAAACTTAGTTCAGGTAACTAAGGAATGCCTTGACAAAGCAATATCAATTTGTGCACCTGGCGTGGAGTTCAAGAAAATTGGCAGAACAATCCAAGAGCATGCAGATAAACATCGTTATGGTGTTGTTAGACAGTTCGTTGGGCATGGTGTTGGACGCGTCTTTCATGCTGATCCAGTTGTTCTGCACTACAGAAACAATGACAGTGGACGCATGGTGTTAAATCAAACCTTCACAATAGAACCGATGCTAACGATTGGTAGCTATAATCCTGTAATGTGGGACGATGATTGGACAGTTGTTACAGAAGATGGAAGCTTATCAGCACAGTTTGAACATACTATCTTAATAACCAAGGATGGGGCTGAGATACTAACTCAGTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0019538 GO:0031365 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071704 GO:0097305 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M24

Protein Analysis

353

Amino Acids

38.82

Weight (kDa)

6.76

Isoelectric Point (pI)

35.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M24	PF00557	117 - 344	2.7e-53	Metallopeptidase family M24

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006508)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25740 AT3G25740 AT4G37040
fragaria_vesca	FvH4_1g15810 FvH4_1g15810 FvH4_1g15810 FvH4_1g15810 FvH4_1g15810 FvH4_1g15810
malus_domestica	MD00G1045000.v1.1 MD02G1169900.v1.1
prunus_persica	Prupe.7G135200_v2.0.a1 Prupe.7G135300_v2.0.a1
pyrus_communis	pycom02g13680
rosa_chinensis	RchiOBHm_Chr2g0105091 RchiOBHm_Chr5g0066781
rosa_laevigata	RLG00000017402
rosa_multiflora	Rmu_sc0005160.1_g000008
rosa_roxburghii	Rroxscaffold_2G00138430
rosa_rugosa	Rorug02G0126300
rosa_samantha	Rh2AG177000 Rh2AG177100 Rh2BG185100 Rh2CG181400 Rh2DG183200
rosa_wichuraiana	Rw2G013890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	75, 182
Acc36I	ACCTGC	2 cut(s)	75, 182
Acc65I	GGTACC	2 cut(s)	59, 621
AccB1I	GGYRCC	2 cut(s)	59, 621
AccII	CGCG	1 cut(s)	834
AciI	CCGC	5 cut(s)	36, 80, 103, 214, 302
AclWI	GGATC	1 cut(s)	842
AcuI	CTGAAG	1 cut(s)	345
AfaI	GTAC	3 cut(s)	30, 61, 623
AfiI	CCNNNNNNNGG	2 cut(s)	571, 1035
AflII	CTTAAG	1 cut(s)	223
AflIII	ACRYGT	1 cut(s)	832
AgsI	TTSAA	5 cut(s)	178, 392, 616, 748, 1010
AjnI	CCWGG	5 cut(s)	112, 229, 304, 415, 733
AleI	CACNNNNGTG	1 cut(s)	527
AluBI	AGCT	4 cut(s)	362, 446, 939, 993
AluI	AGCT	4 cut(s)	362, 446, 939, 993
Alw21I	GWGCWC	1 cut(s)	733
Alw44I	GTGCAC	1 cut(s)	729
AlwI	GGATC	1 cut(s)	842
Ama87I	CYCGRG	1 cut(s)	564
AoxI	GGCC	4 cut(s)	157, 227, 275, 474
ApaLI	GTGCAC	1 cut(s)	729
ApeKI	GCWGC	2 cut(s)	82, 377
Asp700I	GAANNNNTTC	1 cut(s)	238
Asp718I	GGTACC	2 cut(s)	59, 621
AspLEI	GCGC	1 cut(s)	11
AspS9I	GGNCC	3 cut(s)	157, 320, 474
AsuHPI	GGTGA	8 cut(s)	16, 69, 83, 206, 234, 443, 477, 593
AvaI	CYCGRG	1 cut(s)	564
AvaII	GGWCC	1 cut(s)	320
BaeGI	GKGCMC	1 cut(s)	733
BanI	GGYRCC	2 cut(s)	59, 621
Bbv12I	GWGCWC	1 cut(s)	733
BbvI	GCAGC	2 cut(s)	94, 389
BccI	CCATC	3 cut(s)	572, 980, 1028
BciT130I	CCWGG	5 cut(s)	114, 231, 306, 417, 735
BclI	TGATCA	1 cut(s)	334
BfmI	CTRYAG	1 cut(s)	865
BfrI	CTTAAG	1 cut(s)	223
BfuAI	ACCTGC	2 cut(s)	75, 182
BisI	GCNGC	2 cut(s)	83, 378
BlsI	GCNGC	2 cut(s)	84, 379
Bme1390I	CCNGG	5 cut(s)	114, 231, 306, 417, 735
Bme18I	GGWCC	1 cut(s)	320
BmeT110I	CYCGRG	1 cut(s)	564
BmgT120I	GGNCC	3 cut(s)	157, 320, 474
BmiI	GGNNCC	3 cut(s)	61, 475, 623
BmrFI	CCNGG	5 cut(s)	114, 231, 306, 417, 735
BmsI	GCATC	2 cut(s)	658, 912
BoxI	GACNNNNGTC	1 cut(s)	407
BpmI	CTGGAG	1 cut(s)	593
BsaBI	GATNNNNATC	1 cut(s)	786
BsaJI	CCNNGG	5 cut(s)	112, 272, 547, 625, 1029
Bsc4I	CCNNNNNNNGG	2 cut(s)	571, 1035
Bse1I	ACTGG	2 cut(s)	576, 851
Bse3DI	GCAATG	1 cut(s)	24
Bse8I	GATNNNNATC	1 cut(s)	786
BseBI	CCWGG	5 cut(s)	114, 231, 306, 417, 735
BseDI	CCNNGG	5 cut(s)	112, 272, 547, 625, 1029
BseGI	GGATG	2 cut(s)	583, 1039
BseJI	GATNNNNATC	1 cut(s)	786
BseLI	CCNNNNNNNGG	2 cut(s)	571, 1035
BseMI	GCAATG	1 cut(s)	24
BseMII	CTCAG	1 cut(s)	1032
BseNI	ACTGG	2 cut(s)	576, 851
BseRI	GAGGAG	1 cut(s)	37
BseSI	GKGCMC	1 cut(s)	733
BseXI	GCAGC	2 cut(s)	94, 389
BseYI	CCCAGC	1 cut(s)	398
BsgI	GTGCAG	2 cut(s)	505, 845
Bsh1236I	CGCG	1 cut(s)	834
BshFI	GGCC	4 cut(s)	159, 229, 277, 476
BshNI	GGYRCC	2 cut(s)	59, 621
BsiHKAI	GWGCWC	1 cut(s)	733
BsiHKCI	CYCGRG	1 cut(s)	564
BslFI	GGGAC	2 cut(s)	415, 971
BslI	CCNNNNNNNGG	2 cut(s)	571, 1035
BsmFI	GGGAC	2 cut(s)	415, 971
BsmI	GAATGC	3 cut(s)	356, 542, 707
BsnI	GGCC	4 cut(s)	159, 229, 277, 476
BsoBI	CYCGRG	1 cut(s)	564
Bsp1286I	GDGCHC	1 cut(s)	733
Bsp1407I	TGTACA	1 cut(s)	28
Bsp143I	GATC	3 cut(s)	262, 334, 847
Bsp19I	CCATGG	2 cut(s)	547, 625
BspACI	CCGC	5 cut(s)	36, 80, 103, 214, 302
BspANI	GGCC	4 cut(s)	159, 229, 277, 476
BspCNI	CTCAG	1 cut(s)	1033
BspFNI	CGCG	1 cut(s)	834
BspHI	TCATGA	1 cut(s)	337
BspLI	GGNNCC	3 cut(s)	61, 475, 623
BspMI	ACCTGC	2 cut(s)	75, 182
BspPI	GGATC	1 cut(s)	842
BspT107I	GGYRCC	2 cut(s)	59, 621
BspTI	CTTAAG	1 cut(s)	223
BsrDI	GCAATG	1 cut(s)	24
BsrGI	TGTACA	1 cut(s)	28
BsrI	ACTGG	2 cut(s)	576, 851
BssECI	CCNNGG	5 cut(s)	112, 272, 547, 625, 1029
BssMI	GATC	3 cut(s)	262, 334, 847
BssT1I	CCWWGG	4 cut(s)	272, 547, 625, 1029
Bst2UI	CCWGG	5 cut(s)	114, 231, 306, 417, 735
Bst4CI	ACNGT	5 cut(s)	607, 810, 881, 973, 1005
Bst6I	CTCTTC	2 cut(s)	93, 104
BstAFI	CTTAAG	1 cut(s)	223
BstAPI	GCANNNNNTGC	1 cut(s)	23
BstAUI	TGTACA	1 cut(s)	28
BstC8I	GCNNGC	5 cut(s)	24, 122, 375, 673, 777
BstDEI	CTNAG	4 cut(s)	682, 696, 1041, 1053
BstDSI	CCRYGG	2 cut(s)	547, 625
BstF5I	GGATG	2 cut(s)	583, 1039
BstFNI	CGCG	1 cut(s)	834
BstHHI	GCGC	1 cut(s)	11
BstKTI	GATC	3 cut(s)	265, 337, 850
BstMBI	GATC	3 cut(s)	262, 334, 847
BstMWI	GCNNNNNNNGC	1 cut(s)	23
BstNI	CCWGG	5 cut(s)	114, 231, 306, 417, 735
BstNSI	RCATGY	2 cut(s)	128, 779
BstPAI	GACNNNNGTC	1 cut(s)	407
BstSCI	CCNGG	5 cut(s)	112, 229, 304, 415, 733
BstSFI	CTRYAG	1 cut(s)	865
BstSLI	GKGCMC	1 cut(s)	733
BstUI	CGCG	1 cut(s)	834
BstV1I	GCAGC	2 cut(s)	94, 389
BsuRI	GGCC	4 cut(s)	159, 229, 277, 476
BtgI	CCRYGG	2 cut(s)	547, 625
BtsCI	GGATG	2 cut(s)	583, 1039
BtsIMutI	CAGTG	3 cut(s)	534, 886, 1061
BveI	ACCTGC	2 cut(s)	75, 182
Cac8I	GCNNGC	5 cut(s)	24, 122, 375, 673, 777
CciI	TCATGA	1 cut(s)	337
CfoI	GCGC	1 cut(s)	11
Cfr13I	GGNCC	3 cut(s)	157, 320, 474
CseI	GACGC	4 cut(s)	505, 823, 840, 894
Csp6I	GTAC	3 cut(s)	29, 60, 622
CspCI	CAANNNNNGTGG	2 cut(s)	862, 897
CviQI	GTAC	3 cut(s)	29, 60, 622
DdeI	CTNAG	4 cut(s)	682, 696, 1041, 1053
DpnI	GATC	3 cut(s)	264, 336, 849
DpnII	GATC	3 cut(s)	262, 334, 847
Eam1104I	CTCTTC	2 cut(s)	93, 104
EarI	CTCTTC	2 cut(s)	93, 104
Eco130I	CCWWGG	4 cut(s)	272, 547, 625, 1029
Eco147I	AGGCCT	1 cut(s)	229
Eco47I	GGWCC	1 cut(s)	320
Eco57I	CTGAAG	1 cut(s)	345
Eco88I	CYCGRG	1 cut(s)	564
EcoO109I	RGGNCCY	1 cut(s)	474
EcoRII	CCWGG	5 cut(s)	112, 229, 304, 415, 733
EcoT14I	CCWWGG	4 cut(s)	272, 547, 625, 1029
EcoT22I	ATGCAT	2 cut(s)	356, 542
ErhI	CCWWGG	4 cut(s)	272, 547, 625, 1029
FalI	AAGNNNNNCTT	2 cut(s)	265, 297
FaqI	GGGAC	2 cut(s)	415, 971
FauI	CCCGC	1 cut(s)	43
FbaI	TGATCA	1 cut(s)	334
Fnu4HI	GCNGC	2 cut(s)	83, 378
FokI	GGATG	2 cut(s)	590, 1046
Fsp4HI	GCNGC	2 cut(s)	83, 378
GlaI	GCGC	1 cut(s)	10
GluI	GCNGC	2 cut(s)	83, 378
GsaI	CCCAGC	1 cut(s)	402
GsuI	CTGGAG	1 cut(s)	593
HaeIII	GGCC	4 cut(s)	159, 229, 277, 476
HgaI	GACGC	4 cut(s)	505, 823, 840, 894
HhaI	GCGC	1 cut(s)	11
Hin6I	GCGC	1 cut(s)	9
HinP1I	GCGC	1 cut(s)	9
HincII	GTYRAC	1 cut(s)	592
HindII	GTYRAC	1 cut(s)	592
HindIII	AAGCTT	1 cut(s)	991
HinfI	GANTC	1 cut(s)	560
HpaI	GTTAAC	1 cut(s)	592
HphI	GGTGA	8 cut(s)	16, 69, 83, 206, 234, 443, 477, 593
Hpy166II	GTNNAC	5 cut(s)	320, 451, 592, 731, 884
Hpy188III	TCNNGA	6 cut(s)	144, 260, 338, 389, 564, 748
Hpy8I	GTNNAC	5 cut(s)	320, 451, 592, 731, 884
Hpy99I	CGWCG	1 cut(s)	252
HpyAV	CCTTC	2 cut(s)	492, 916
HpyCH4III	ACNGT	5 cut(s)	607, 810, 881, 973, 1005
HpyF10VI	GCNNNNNNNGC	1 cut(s)	23
HpyF3I	CTNAG	4 cut(s)	682, 696, 1041, 1053
HspAI	GCGC	1 cut(s)	9
KpnI	GGTACC	2 cut(s)	63, 625
Ksp22I	TGATCA	1 cut(s)	334
KspAI	GTTAAC	1 cut(s)	592
Kzo9I	GATC	3 cut(s)	262, 334, 847
Lsp1109I	GCAGC	2 cut(s)	94, 389
LweI	GCATC	2 cut(s)	658, 912
MaeIII	GTNAC	5 cut(s)	127, 581, 601, 691, 976
MalI	GATC	3 cut(s)	264, 336, 849
MboI	GATC	3 cut(s)	262, 334, 847
MboII	GAAGA	4 cut(s)	80, 91, 195, 995
MhlI	GDGCHC	1 cut(s)	733
MluCI	AATT	5 cut(s)	309, 435, 462, 723, 753
MluI	ACGCGT	1 cut(s)	832
MmeI	TCCRAC	1 cut(s)	808
MnlI	CCTC	9 cut(s)	53, 58, 96, 140, 179, 255, 334, 363, 568
Mph1103I	ATGCAT	2 cut(s)	356, 542
MroXI	GAANNNNTTC	1 cut(s)	238
MseI	TTAA	4 cut(s)	224, 591, 896, 1022
MslI	CAYNNNNRTG	3 cut(s)	336, 527, 792
MspCI	CTTAAG	1 cut(s)	223
MspR9I	CCNGG	5 cut(s)	114, 231, 306, 417, 735
Mva1269I	GAATGC	3 cut(s)	356, 542, 707
MvaI	CCWGG	5 cut(s)	114, 231, 306, 417, 735
MvnI	CGCG	1 cut(s)	834
MwoI	GCNNNNNNNGC	1 cut(s)	23
NcoI	CCATGG	2 cut(s)	547, 625
NdeII	GATC	3 cut(s)	262, 334, 847
NlaIV	GGNNCC	3 cut(s)	61, 475, 623
NmuCI	GTSAC	3 cut(s)	127, 581, 601
NsiI	ATGCAT	2 cut(s)	356, 542
NspI	RCATGY	2 cut(s)	128, 779
OliI	CACNNNNGTG	1 cut(s)	527
PaeI	GCATGC	1 cut(s)	779
PagI	TCATGA	1 cut(s)	337
PaqCI	CACCTGC	2 cut(s)	75, 182
PceI	AGGCCT	1 cut(s)	229
PctI	GAATGC	3 cut(s)	356, 542, 707
PdmI	GAANNNNTTC	1 cut(s)	238
PfeI	GAWTC	1 cut(s)	560
PkrI	GCNGC	2 cut(s)	84, 379
PshAI	GACNNNNGTC	1 cut(s)	407
Psp6I	CCWGG	5 cut(s)	112, 229, 304, 415, 733
PspFI	CCCAGC	1 cut(s)	398
PspGI	CCWGG	5 cut(s)	112, 229, 304, 415, 733
PspN4I	GGNNCC	3 cut(s)	61, 475, 623
PspPI	GGNCC	3 cut(s)	157, 320, 474
RsaI	GTAC	3 cut(s)	30, 61, 623
RsaNI	GTAC	3 cut(s)	29, 60, 622
RseI	CAYNNNNRTG	3 cut(s)	336, 527, 792
SaqAI	TTAA	4 cut(s)	224, 591, 896, 1022
SatI	GCNGC	2 cut(s)	83, 378
Sau3AI	GATC	3 cut(s)	262, 334, 847
Sau96I	GGNCC	3 cut(s)	157, 320, 474
ScrFI	CCNGG	5 cut(s)	114, 231, 306, 417, 735
SduI	GDGCHC	1 cut(s)	733
SfaNI	GCATC	2 cut(s)	658, 912
SfcI	CTRYAG	1 cut(s)	865
SinI	GGWCC	1 cut(s)	320
SmiMI	CAYNNNNRTG	3 cut(s)	336, 527, 792
SmlI	CTYRAG	1 cut(s)	223
SmoI	CTYRAG	1 cut(s)	223
SphI	GCATGC	1 cut(s)	779
Sse9I	AATT	5 cut(s)	309, 435, 462, 723, 753
SseBI	AGGCCT	1 cut(s)	229
SsiI	CCGC	5 cut(s)	36, 80, 103, 214, 302
StuI	AGGCCT	1 cut(s)	229
StyD4I	CCNGG	5 cut(s)	112, 229, 304, 415, 733
StyI	CCWWGG	4 cut(s)	272, 547, 625, 1029
TaaI	ACNGT	5 cut(s)	607, 810, 881, 973, 1005
TaqII	GACCGA	1 cut(s)	179
TasI	AATT	5 cut(s)	309, 435, 462, 723, 753
TatI	WGTACW	1 cut(s)	28
TfiI	GAWTC	1 cut(s)	560
Tru1I	TTAA	4 cut(s)	224, 591, 896, 1022
Tru9I	TTAA	4 cut(s)	224, 591, 896, 1022
TscAI	CASTG	3 cut(s)	534, 886, 1061
TseFI	GTSAC	3 cut(s)	127, 581, 601
TseI	GCWGC	2 cut(s)	82, 377
Tsp45I	GTSAC	3 cut(s)	127, 581, 601
TspDTI	ATGAA	3 cut(s)	447, 549, 830
TspRI	CASTG	3 cut(s)	534, 886, 1061
Vha464I	CTTAAG	1 cut(s)	223
VneI	GTGCAC	1 cut(s)	729
VpaK11BI	GGWCC	1 cut(s)	320
XceI	RCATGY	2 cut(s)	128, 779
XmnI	GAANNNNTTC	1 cut(s)	238
Zsp2I	ATGCAT	2 cut(s)	356, 542

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.