Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006508

Physical Location & Seq

Genomic Coordinates Forward (+)

17455100 .. 17457357

Gene Structure 2258 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G37040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGGCGGGCGTGAAATCTCTGCAACCTAGACTCATATCTTCCTTTCTCGGCAACAATTCTATTAGATCAACGCAACCACTTATTCATCTCTTTCGCTTCGATTTAGGAAGAAGACATGTTTCGATGCAATTATCAAGAACCTTTTCTGGATTAACCGATCTCCTGTTTAATAGAAGAAATGAAGATGAAGTTATTGATGGCAAGAGAAAACGTCTGAGACCGGGAAATGTATCTCCTCGTCGTCCTGTTCCGGGTCATATAACAAAACCTCCTTATGTTGATTCTCTTCAAGCTCCCGGAATCTCAAGTGGACTTGAAGTTCATGATAAGAAAGGTATAGAATGCATGAGAGCTTCTGGAATACTTGCAGCTAGGGTTCGAGATTACGCTGGCACTTTGGTTAAGCCAGGCGTAACCACTGATGAAATCGATGAAGCAGTTCACAATATGATTATTGAGAATGGAGCTTATCCTTCGCCTCTTGGTTATGGAGGTTTCCCGAAAAGTGTTTGCACATCTGTGAATGAATGCATTTGCCATGGTATACCAGATTCAAGACCACTTGAGGATGGGGATATTATCAACATCGATGTCACAGTTTATTTGAATGGTTATCATGGTGATACTTCAGCAACTTTCTTCTGTGGAAATGTTGACGAGAAGGCTAAAAAGCTAGTCGAGGTGACGAAAGAGTCTCTCGACAAAGCAATATCAATATGTGGTCCCGGAGTTGAGTACAAGAAAATCGGCAAAGTCATTCATGATCTTGCAGATAAACATAAATATGGAGTTGTTCGACAATTTGTAGGCCACGGGGTTGGCAGCGTCTTCCACGCTGATCCAGTTGTTCTGCATTTCCGGAACAATGAAGCTGGACGTATGGTCTTGAATCAAACCTTCACCATTGAACCGATGCTTACAATAGGAAGCAGAAACCCGATAATGTGGGATGATAACTGGACCGTGGTAACAGAAGATGCAAGCCTCTCGGCGCAATTCGAGCATACCATTCTTATAACCAAAGATGGTGCTGAGATTCTAACCAAGTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0019538 GO:0031365 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071704 GO:0097305 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M24

Protein Analysis

350

Amino Acids

38.53

Weight (kDa)

7.21

Isoelectric Point (pI)

43.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M24	PF00557	114 - 341	1.4e-51	Metallopeptidase family M24

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006508)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25740 AT3G25740 AT4G37040
fragaria_vesca	FvH4_1g15810 FvH4_1g15810 FvH4_1g15810 FvH4_1g15810 FvH4_1g15810 FvH4_1g15810
malus_domestica	MD00G1045000.v1.1 MD02G1169900.v1.1
prunus_persica	Prupe.7G135200_v2.0.a1 Prupe.7G135300_v2.0.a1
pyrus_communis	pycom02g13680
rosa_chinensis	RchiOBHm_Chr2g0105091 RchiOBHm_Chr5g0066781
rosa_laevigata	RLG00000017402
rosa_multiflora	Rmu_sc0005160.1_g000008
rosa_roxburghii	Rroxscaffold_2G00138430
rosa_rugosa	Rorug02G0126300
rosa_samantha	Rh2AG177000 Rh2AG177100 Rh2BG185100 Rh2CG181400 Rh2DG183200
rosa_wichuraiana	Rw2G013890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1016
AasI	GACNNNNNNGTC	1 cut(s)	691
AccI	GTMKAC	1 cut(s)	544
AccIII	TCCGGA	1 cut(s)	858
AciI	CCGC	1 cut(s)	5
AclWI	GGATC	1 cut(s)	833
AcuI	CTGAAG	1 cut(s)	612
AfaI	GTAC	1 cut(s)	737
AfiI	CCNNNNNNNGG	1 cut(s)	251
AflIII	ACRYGT	1 cut(s)	115
AgsI	TTSAA	6 cut(s)	290, 317, 555, 607, 889, 908
AhdI	GACNNNNNGTC	1 cut(s)	881
AjnI	CCWGG	1 cut(s)	406
AleI	CACNNNNGTG	1 cut(s)	518
AloI	GAACNNNNNNTCC	2 cut(s)	303, 335
AluBI	AGCT	6 cut(s)	293, 353, 371, 467, 673, 872
AluI	AGCT	6 cut(s)	293, 353, 371, 467, 673, 872
Alw26I	GTCTC	2 cut(s)	211, 699
AlwI	GGATC	1 cut(s)	833
Aor13HI	TCCGGA	1 cut(s)	858
AoxI	GGCC	1 cut(s)	808
ApeKI	GCWGC	2 cut(s)	368, 822
Asp700I	GAANNNNTTC	2 cut(s)	142, 438
AspLEI	GCGC	1 cut(s)	994
AspS9I	GGNCC	2 cut(s)	722, 960
AsuC2I	CCSGG	4 cut(s)	222, 252, 297, 726
AsuHPI	GGTGA	3 cut(s)	632, 694, 892
AvaII	GGWCC	2 cut(s)	722, 960
BbsI	GAAGAC	2 cut(s)	118, 820
BbvI	GCAGC	2 cut(s)	380, 834
BccI	CCATC	3 cut(s)	191, 563, 1019
BcgI	CGANNNNNNTGC	2 cut(s)	969, 1003
BciT130I	CCWGG	1 cut(s)	408
BcnI	CCSGG	4 cut(s)	222, 252, 297, 726
BcoDI	GTCTC	2 cut(s)	211, 699
BfaI	CTAG	3 cut(s)	27, 372, 674
BisI	GCNGC	2 cut(s)	369, 823
BlsI	GCNGC	2 cut(s)	370, 824
Bme1390I	CCNGG	5 cut(s)	222, 252, 297, 408, 726
Bme18I	GGWCC	2 cut(s)	722, 960
BmeRI	GACNNNNNGTC	1 cut(s)	881
BmgT120I	GGNCC	2 cut(s)	722, 960
BmiI	GGNNCC	1 cut(s)	724
BmrFI	CCNGG	5 cut(s)	222, 252, 297, 408, 726
BmsI	GCATC	3 cut(s)	114, 903, 967
BpiI	GAAGAC	2 cut(s)	118, 820
BpuEI	CTTGAG	2 cut(s)	289, 584
BpuMI	CCSGG	4 cut(s)	222, 252, 297, 726
Bsa29I	ATCGAT	2 cut(s)	429, 588
BsaI	GGTCTC	1 cut(s)	211
BsaJI	CCNNGG	3 cut(s)	538, 811, 963
BsaWI	WCCGGW	1 cut(s)	858
BsaXI	ACNNNNNCTCC	2 cut(s)	253, 283
Bsc4I	CCNNNNNNNGG	1 cut(s)	251
Bse1I	ACTGG	2 cut(s)	842, 962
BseAI	TCCGGA	1 cut(s)	858
BseBI	CCWGG	1 cut(s)	408
BseCI	ATCGAT	2 cut(s)	429, 588
BseDI	CCNNGG	3 cut(s)	538, 811, 963
BseGI	GGATG	2 cut(s)	574, 955
BseLI	CCNNNNNNNGG	1 cut(s)	251
BseMII	CTCAG	2 cut(s)	206, 1023
BseNI	ACTGG	2 cut(s)	842, 962
BseRI	GAGGAG	1 cut(s)	225
BseXI	GCAGC	2 cut(s)	380, 834
BshFI	GGCC	1 cut(s)	810
BshVI	ATCGAT	2 cut(s)	429, 588
BsiSI	CCGG	5 cut(s)	221, 251, 297, 726, 859
BslFI	GGGAC	1 cut(s)	708
BslI	CCNNNNNNNGG	1 cut(s)	251
BsmAI	GTCTC	2 cut(s)	211, 699
BsmFI	GGGAC	1 cut(s)	708
BsmI	GAATGC	2 cut(s)	347, 533
BsnI	GGCC	1 cut(s)	810
Bso31I	GGTCTC	1 cut(s)	211
Bsp13I	TCCGGA	1 cut(s)	858
Bsp143I	GATC	4 cut(s)	65, 157, 763, 838
Bsp19I	CCATGG	1 cut(s)	538
BspACI	CCGC	1 cut(s)	5
BspANI	GGCC	1 cut(s)	810
BspCNI	CTCAG	2 cut(s)	207, 1024
BspDI	ATCGAT	2 cut(s)	429, 588
BspEI	TCCGGA	1 cut(s)	858
BspHI	TCATGA	2 cut(s)	322, 760
BspLI	GGNNCC	1 cut(s)	724
BspPI	GGATC	1 cut(s)	833
BspTNI	GGTCTC	1 cut(s)	211
BsrI	ACTGG	2 cut(s)	842, 962
BssECI	CCNNGG	3 cut(s)	538, 811, 963
BssMI	GATC	4 cut(s)	65, 157, 763, 838
BssNAI	GTATAC	1 cut(s)	545
BssT1I	CCWWGG	1 cut(s)	538
Bst1107I	GTATAC	1 cut(s)	545
Bst2UI	CCWGG	1 cut(s)	408
Bst4CI	ACNGT	2 cut(s)	598, 964
Bst6I	CTCTTC	1 cut(s)	291
BstC8I	GCNNGC	3 cut(s)	7, 391, 982
BstDEI	CTNAG	2 cut(s)	215, 1032
BstDSI	CCRYGG	3 cut(s)	538, 811, 963
BstF5I	GGATG	2 cut(s)	574, 955
BstHHI	GCGC	1 cut(s)	994
BstKTI	GATC	4 cut(s)	68, 160, 766, 841
BstMAI	GTCTC	2 cut(s)	211, 699
BstMBI	GATC	4 cut(s)	65, 157, 763, 838
BstMWI	GCNNNNNNNGC	1 cut(s)	1000
BstNI	CCWGG	1 cut(s)	408
BstNSI	RCATGY	1 cut(s)	119
BstSCI	CCNGG	5 cut(s)	220, 250, 295, 406, 724
BstV1I	GCAGC	2 cut(s)	380, 834
BstV2I	GAAGAC	2 cut(s)	118, 820
BstXI	CCANNNNNNTGG	1 cut(s)	818
BstZ17I	GTATAC	1 cut(s)	545
Bsu15I	ATCGAT	2 cut(s)	429, 588
BsuRI	GGCC	1 cut(s)	810
BsuTUI	ATCGAT	2 cut(s)	429, 588
BtgI	CCRYGG	3 cut(s)	538, 811, 963
BtsCI	GGATG	2 cut(s)	574, 955
BtsIMutI	CAGTG	1 cut(s)	417
Cac8I	GCNNGC	3 cut(s)	7, 391, 982
CciI	TCATGA	2 cut(s)	322, 760
CfoI	GCGC	1 cut(s)	994
Cfr13I	GGNCC	2 cut(s)	722, 960
ClaI	ATCGAT	2 cut(s)	429, 588
CseI	GACGC	1 cut(s)	814
Csp6I	GTAC	1 cut(s)	736
CviAII	CATG	6 cut(s)	116, 323, 346, 539, 617, 761
CviQI	GTAC	1 cut(s)	736
DdeI	CTNAG	2 cut(s)	215, 1032
DpnI	GATC	4 cut(s)	67, 159, 765, 840
DpnII	GATC	4 cut(s)	65, 157, 763, 838
DrdI	GACNNNNNNGTC	1 cut(s)	691
DriI	GACNNNNNGTC	1 cut(s)	881
DseDI	GACNNNNNNGTC	1 cut(s)	691
Eam1104I	CTCTTC	1 cut(s)	291
Eam1105I	GACNNNNNGTC	1 cut(s)	881
EarI	CTCTTC	1 cut(s)	291
Eco130I	CCWWGG	1 cut(s)	538
Eco31I	GGTCTC	1 cut(s)	211
Eco47I	GGWCC	2 cut(s)	722, 960
Eco57I	CTGAAG	1 cut(s)	612
EcoRII	CCWGG	1 cut(s)	406
EcoT14I	CCWWGG	1 cut(s)	538
EcoT22I	ATGCAT	2 cut(s)	347, 533
ErhI	CCWWGG	1 cut(s)	538
FaeI	CATG	6 cut(s)	119, 326, 349, 542, 620, 764
FaqI	GGGAC	1 cut(s)	708
FatI	CATG	6 cut(s)	115, 322, 345, 538, 616, 760
FblI	GTMKAC	1 cut(s)	544
Fnu4HI	GCNGC	2 cut(s)	369, 823
FokI	GGATG	2 cut(s)	581, 962
Fsp4HI	GCNGC	2 cut(s)	369, 823
FspBI	CTAG	3 cut(s)	27, 372, 674
GlaI	GCGC	1 cut(s)	993
GluI	GCNGC	2 cut(s)	369, 823
HaeIII	GGCC	1 cut(s)	810
HapII	CCGG	5 cut(s)	221, 251, 297, 726, 859
HgaI	GACGC	1 cut(s)	814
HhaI	GCGC	1 cut(s)	994
Hin1II	CATG	6 cut(s)	119, 326, 349, 542, 620, 764
Hin6I	GCGC	1 cut(s)	992
HinP1I	GCGC	1 cut(s)	992
HincII	GTYRAC	1 cut(s)	655
HindII	GTYRAC	1 cut(s)	655
HinfI	GANTC	7 cut(s)	30, 281, 300, 551, 692, 889, 1036
HpaII	CCGG	5 cut(s)	221, 251, 297, 726, 859
HphI	GGTGA	3 cut(s)	632, 694, 892
Hpy166II	GTNNAC	4 cut(s)	311, 442, 545, 655
Hpy188I	TCNGA	1 cut(s)	216
Hpy8I	GTNNAC	4 cut(s)	311, 442, 545, 655
Hpy99I	CGWCG	1 cut(s)	243
HpyAV	CCTTC	3 cut(s)	483, 655, 907
HpyCH4III	ACNGT	2 cut(s)	598, 964
HpyCH4IV	ACGT	2 cut(s)	211, 877
HpyCH4V	TGCA	9 cut(s)	22, 127, 345, 368, 513, 531, 770, 853, 980
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1000
HpyF3I	CTNAG	2 cut(s)	215, 1032
HpySE526I	ACGT	2 cut(s)	211, 877
Hsp92II	CATG	6 cut(s)	119, 326, 349, 542, 620, 764
HspAI	GCGC	1 cut(s)	992
Kpn2I	TCCGGA	1 cut(s)	858
Kzo9I	GATC	4 cut(s)	65, 157, 763, 838
LmnI	GCTCC	2 cut(s)	298, 464
Lsp1109I	GCAGC	2 cut(s)	380, 834
LweI	GCATC	3 cut(s)	114, 903, 967
MaeI	CTAG	3 cut(s)	27, 372, 674
MaeII	ACGT	2 cut(s)	211, 877
MaeIII	GTNAC	4 cut(s)	412, 592, 682, 967
MalI	GATC	4 cut(s)	67, 159, 765, 840
MboI	GATC	4 cut(s)	65, 157, 763, 838
MboII	GAAGA	9 cut(s)	30, 120, 123, 186, 194, 278, 631, 820, 986
MluCI	AATT	4 cut(s)	55, 128, 800, 995
MlyI	GAGTC	2 cut(s)	24, 701
MnlI	CCTC	7 cut(s)	246, 279, 485, 489, 559, 673, 995
Mph1103I	ATGCAT	2 cut(s)	347, 533
MroI	TCCGGA	1 cut(s)	858
MroXI	GAANNNNTTC	2 cut(s)	142, 438
MseI	TTAA	4 cut(s)	152, 168, 402, 1051
MslI	CAYNNNNRTG	2 cut(s)	518, 783
MspI	CCGG	5 cut(s)	221, 251, 297, 726, 859
MspR9I	CCNGG	5 cut(s)	222, 252, 297, 408, 726
Mva1269I	GAATGC	2 cut(s)	347, 533
MvaI	CCWGG	1 cut(s)	408
MwoI	GCNNNNNNNGC	1 cut(s)	1000
NciI	CCSGG	4 cut(s)	222, 252, 297, 726
NcoI	CCATGG	1 cut(s)	538
NdeII	GATC	4 cut(s)	65, 157, 763, 838
NlaIII	CATG	6 cut(s)	119, 326, 349, 542, 620, 764
NlaIV	GGNNCC	1 cut(s)	724
NmeAIII	GCCGAG	2 cut(s)	27, 968
NmuCI	GTSAC	2 cut(s)	592, 682
NsiI	ATGCAT	2 cut(s)	347, 533
NspI	RCATGY	1 cut(s)	119
OliI	CACNNNNGTG	1 cut(s)	518
PagI	TCATGA	2 cut(s)	322, 760
PciI	ACATGT	1 cut(s)	115
PctI	GAATGC	2 cut(s)	347, 533
PdmI	GAANNNNTTC	2 cut(s)	142, 438
PfeI	GAWTC	5 cut(s)	281, 300, 551, 889, 1036
PfoI	TCCNGGA	2 cut(s)	295, 724
PkrI	GCNGC	2 cut(s)	370, 824
PleI	GAGTC	2 cut(s)	24, 700
PpsI	GAGTC	2 cut(s)	24, 700
PscI	ACATGT	1 cut(s)	115
PsiI	TTATAA	1 cut(s)	1016
Psp6I	CCWGG	1 cut(s)	406
PspGI	CCWGG	1 cut(s)	406
PspN4I	GGNNCC	1 cut(s)	724
PspPI	GGNCC	2 cut(s)	722, 960
RsaI	GTAC	1 cut(s)	737
RsaNI	GTAC	1 cut(s)	736
RseI	CAYNNNNRTG	2 cut(s)	518, 783
SaqAI	TTAA	4 cut(s)	152, 168, 402, 1051
SatI	GCNGC	2 cut(s)	369, 823
Sau3AI	GATC	4 cut(s)	65, 157, 763, 838
Sau96I	GGNCC	2 cut(s)	722, 960
SchI	GAGTC	2 cut(s)	24, 701
ScrFI	CCNGG	5 cut(s)	222, 252, 297, 408, 726
SfaNI	GCATC	3 cut(s)	114, 903, 967
SinI	GGWCC	2 cut(s)	722, 960
SmiMI	CAYNNNNRTG	2 cut(s)	518, 783
SmlI	CTYRAG	2 cut(s)	304, 563
SmoI	CTYRAG	2 cut(s)	304, 563
Sse9I	AATT	4 cut(s)	55, 128, 800, 995
SsiI	CCGC	1 cut(s)	5
SspMI	CTAG	3 cut(s)	27, 372, 674
StyD4I	CCNGG	5 cut(s)	220, 250, 295, 406, 724
StyI	CCWWGG	1 cut(s)	538
TaaI	ACNGT	2 cut(s)	598, 964
TaiI	ACGT	2 cut(s)	214, 880
TaqI	TCGA	9 cut(s)	99, 122, 379, 429, 588, 678, 699, 796, 999
TasI	AATT	4 cut(s)	55, 128, 800, 995
TatI	WGTACW	1 cut(s)	735
TfiI	GAWTC	5 cut(s)	281, 300, 551, 889, 1036
Tru1I	TTAA	4 cut(s)	152, 168, 402, 1051
Tru9I	TTAA	4 cut(s)	152, 168, 402, 1051
TscAI	CASTG	1 cut(s)	424
TseFI	GTSAC	2 cut(s)	592, 682
TseI	GCWGC	2 cut(s)	368, 822
Tsp45I	GTSAC	2 cut(s)	592, 682
TspDTI	ATGAA	9 cut(s)	74, 195, 201, 311, 438, 447, 540, 749, 882
TspRI	CASTG	1 cut(s)	424
VpaK11BI	GGWCC	2 cut(s)	722, 960
XceI	RCATGY	1 cut(s)	119
XmiI	GTMKAC	1 cut(s)	544
XmnI	GAANNNNTTC	2 cut(s)	142, 438
XspI	CTAG	3 cut(s)	27, 372, 674
Zsp2I	ATGCAT	2 cut(s)	347, 533

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.