Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0006508

Physical Location & Seq

Genomic Coordinates Forward (+)

8212487 .. 8215345

Gene Structure 2859 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1045000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGGAAGTGCTAAACAAGTGCAAACGTCTAAGACCTGGAAAAATTTCACCTAAGCGCTGTGTTGCAGATCATATACCAAGGCCTCCTTATGTAAAATCTAAAAAACCACCTGGGATTGCGAGTGGACCTGAAGTGCATGATGAGAAGGGGATAGAGTGCATGAGAGCCTCTGGAAGGCTTGCAGCACAGGTTCTTGAATCTGCTGGAACTTTGGTCAAGCCAGGAATAAAGACGGATGAAATTGACCAAGCTGTTCATCAAATAATAGTTGATAAGGGTGCCTACCCTTTCACCGCTTGGCTATGGTGGGTTTCCAAAGAGTTAAGCACATCAGTGAATGAATGTATTTGCCATGGAATACCAGATTACCGAGCACTTGAGGATGGTGATATAGTTAACACTGATGTTACCGTCTATTTAAATGTAACTAAAGAATGTCTCGACAAGGCCATCTCAGTATGTGCACCGGGATTAGAGCATAAGAAAATTGGCAACACAATCCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0019538 GO:0031365 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071704 GO:0097305 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M24

Protein Analysis

169

Amino Acids

18.46

Weight (kDa)

8.13

Isoelectric Point (pI)

33.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M24	PF00557	52 - 140	3.5e-13	Metallopeptidase family M24

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006508)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25740 AT3G25740 AT4G37040
fragaria_vesca	FvH4_1g15810 FvH4_1g15810 FvH4_1g15810 FvH4_1g15810 FvH4_1g15810 FvH4_1g15810
malus_domestica	MD00G1045000.v1.1 MD02G1169900.v1.1
prunus_persica	Prupe.7G135200_v2.0.a1 Prupe.7G135300_v2.0.a1
pyrus_communis	pycom02g13680
rosa_chinensis	RchiOBHm_Chr2g0105091 RchiOBHm_Chr5g0066781
rosa_laevigata	RLG00000017402
rosa_multiflora	Rmu_sc0005160.1_g000008
rosa_roxburghii	Rroxscaffold_2G00138430
rosa_rugosa	Rorug02G0126300
rosa_samantha	Rh2AG177000 Rh2AG177100 Rh2BG185100 Rh2CG181400 Rh2DG183200
rosa_wichuraiana	Rw2G013890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	278
AciI	CCGC	1 cut(s)	294
AcsI	RAATTY	1 cut(s)	42
AcuI	CTGAAG	1 cut(s)	150
AfeI	AGCGCT	1 cut(s)	56
AfiI	CCNNNNNNNGG	1 cut(s)	174
AgsI	TTSAA	1 cut(s)	197
AjnI	CCWGG	3 cut(s)	34, 109, 220
AleI	CACNNNNGTG	1 cut(s)	332
AluBI	AGCT	1 cut(s)	251
AluI	AGCT	1 cut(s)	251
Alw21I	GWGCWC	2 cut(s)	376, 466
Alw26I	GTCTC	1 cut(s)	443
Alw44I	GTGCAC	1 cut(s)	462
Aor51HI	AGCGCT	1 cut(s)	56
AoxI	GGCC	2 cut(s)	80, 447
ApaLI	GTGCAC	1 cut(s)	462
ApeKI	GCWGC	1 cut(s)	182
ApoI	RAATTY	1 cut(s)	42
Asp700I	GAANNNNTTC	1 cut(s)	43
AspLEI	GCGC	1 cut(s)	57
AspS9I	GGNCC	1 cut(s)	125
AsuC2I	CCSGG	1 cut(s)	468
AsuHPI	GGTGA	3 cut(s)	39, 283, 398
AvaII	GGWCC	1 cut(s)	125
BaeGI	GKGCMC	1 cut(s)	466
BanI	GGYRCC	1 cut(s)	278
Bbv12I	GWGCWC	2 cut(s)	376, 466
BbvI	GCAGC	1 cut(s)	194
BccI	CCATC	2 cut(s)	377, 458
BciT130I	CCWGG	3 cut(s)	36, 111, 222
BcnI	CCSGG	1 cut(s)	468
BcoDI	GTCTC	1 cut(s)	443
BfoI	RGCGCY	1 cut(s)	58
BisI	GCNGC	1 cut(s)	183
BlsI	GCNGC	1 cut(s)	184
Bme1390I	CCNGG	4 cut(s)	36, 111, 222, 468
Bme18I	GGWCC	1 cut(s)	125
BmgT120I	GGNCC	1 cut(s)	125
BmiI	GGNNCC	1 cut(s)	280
BmrFI	CCNGG	4 cut(s)	36, 111, 222, 468
Bpu10I	CCTNAGC	1 cut(s)	51
BpuEI	CTTGAG	1 cut(s)	398
BpuMI	CCSGG	1 cut(s)	468
BsaJI	CCNNGG	3 cut(s)	77, 110, 352
Bsc4I	CCNNNNNNNGG	1 cut(s)	174
Bse1I	ACTGG	1 cut(s)	502
BseBI	CCWGG	3 cut(s)	36, 111, 222
BseDI	CCNNGG	3 cut(s)	77, 110, 352
BseGI	GGATG	2 cut(s)	241, 388
BseLI	CCNNNNNNNGG	1 cut(s)	174
BseMII	CTCAG	1 cut(s)	468
BseNI	ACTGG	1 cut(s)	502
BseSI	GKGCMC	1 cut(s)	466
BseXI	GCAGC	1 cut(s)	194
BshFI	GGCC	2 cut(s)	82, 449
BshNI	GGYRCC	1 cut(s)	278
BsiHKAI	GWGCWC	2 cut(s)	376, 466
BsiSI	CCGG	1 cut(s)	467
BslI	CCNNNNNNNGG	1 cut(s)	174
BsmAI	GTCTC	1 cut(s)	443
BsnI	GGCC	2 cut(s)	82, 449
Bsp1286I	GDGCHC	2 cut(s)	376, 466
Bsp143I	GATC	1 cut(s)	67
Bsp19I	CCATGG	1 cut(s)	352
BspACI	CCGC	1 cut(s)	294
BspANI	GGCC	2 cut(s)	82, 449
BspCNI	CTCAG	1 cut(s)	467
BspLI	GGNNCC	1 cut(s)	280
BspT107I	GGYRCC	1 cut(s)	278
BsrI	ACTGG	1 cut(s)	502
BssECI	CCNNGG	3 cut(s)	77, 110, 352
BssMI	GATC	1 cut(s)	67
BssT1I	CCWWGG	2 cut(s)	77, 352
Bst2UI	CCWGG	3 cut(s)	36, 111, 222
Bst4CI	ACNGT	1 cut(s)	412
BstC8I	GCNNGC	1 cut(s)	180
BstDEI	CTNAG	3 cut(s)	29, 51, 454
BstDSI	CCRYGG	1 cut(s)	352
BstENI	CCTNNNNNAGG	1 cut(s)	172
BstF5I	GGATG	2 cut(s)	241, 388
BstH2I	RGCGCY	1 cut(s)	58
BstHHI	GCGC	1 cut(s)	57
BstKTI	GATC	1 cut(s)	70
BstMAI	GTCTC	1 cut(s)	443
BstMBI	GATC	1 cut(s)	67
BstNI	CCWGG	3 cut(s)	36, 111, 222
BstSCI	CCNGG	4 cut(s)	34, 109, 220, 466
BstSLI	GKGCMC	1 cut(s)	466
BstV1I	GCAGC	1 cut(s)	194
BsuRI	GGCC	2 cut(s)	82, 449
BtgI	CCRYGG	1 cut(s)	352
BtsCI	GGATG	2 cut(s)	241, 388
BtsIMutI	CAGTG	2 cut(s)	339, 399
Cac8I	GCNNGC	1 cut(s)	180
CfoI	GCGC	1 cut(s)	57
Cfr13I	GGNCC	1 cut(s)	125
CviAII	CATG	3 cut(s)	137, 160, 353
CviJI	RGCY	7 cut(s)	82, 167, 178, 220, 251, 301, 449
CviKI_1	RGCY	7 cut(s)	82, 167, 178, 220, 251, 301, 449
DdeI	CTNAG	3 cut(s)	29, 51, 454
DpnI	GATC	1 cut(s)	69
DpnII	GATC	1 cut(s)	67
DraI	TTTAAA	1 cut(s)	420
Eco130I	CCWWGG	2 cut(s)	77, 352
Eco147I	AGGCCT	1 cut(s)	82
Eco47I	GGWCC	1 cut(s)	125
Eco47III	AGCGCT	1 cut(s)	56
Eco57I	CTGAAG	1 cut(s)	150
EcoNI	CCTNNNNNAGG	1 cut(s)	172
EcoRII	CCWGG	3 cut(s)	34, 109, 220
EcoT14I	CCWWGG	2 cut(s)	77, 352
ErhI	CCWWGG	2 cut(s)	77, 352
FaeI	CATG	3 cut(s)	140, 163, 356
FalI	AAGNNNNNCTT	2 cut(s)	70, 102
FatI	CATG	3 cut(s)	136, 159, 352
Fnu4HI	GCNGC	1 cut(s)	183
FokI	GGATG	2 cut(s)	248, 395
Fsp4HI	GCNGC	1 cut(s)	183
GlaI	GCGC	1 cut(s)	56
GluI	GCNGC	1 cut(s)	183
HaeII	RGCGCY	1 cut(s)	58
HaeIII	GGCC	2 cut(s)	82, 449
HapII	CCGG	1 cut(s)	467
HhaI	GCGC	1 cut(s)	57
Hin1II	CATG	3 cut(s)	140, 163, 356
Hin6I	GCGC	1 cut(s)	55
HinP1I	GCGC	1 cut(s)	55
HincII	GTYRAC	1 cut(s)	397
HindII	GTYRAC	1 cut(s)	397
HinfI	GANTC	1 cut(s)	197
HpaI	GTTAAC	1 cut(s)	397
HpaII	CCGG	1 cut(s)	467
HphI	GGTGA	3 cut(s)	39, 283, 398
Hpy166II	GTNNAC	3 cut(s)	125, 397, 464
Hpy188III	TCNNGA	3 cut(s)	171, 194, 440
Hpy8I	GTNNAC	3 cut(s)	125, 397, 464
HpyAV	CCTTC	2 cut(s)	139, 168
HpyCH4III	ACNGT	1 cut(s)	412
HpyCH4IV	ACGT	1 cut(s)	25
HpyCH4V	TGCA	6 cut(s)	21, 65, 136, 159, 182, 464
HpyF3I	CTNAG	3 cut(s)	29, 51, 454
HpySE526I	ACGT	1 cut(s)	25
Hsp92II	CATG	3 cut(s)	140, 163, 356
HspAI	GCGC	1 cut(s)	55
KspAI	GTTAAC	1 cut(s)	397
Kzo9I	GATC	1 cut(s)	67
Lsp1109I	GCAGC	1 cut(s)	194
MaeII	ACGT	1 cut(s)	25
MaeIII	GTNAC	2 cut(s)	406, 424
MalI	GATC	1 cut(s)	69
MboI	GATC	1 cut(s)	67
MhlI	GDGCHC	2 cut(s)	376, 466
MluCI	AATT	3 cut(s)	42, 240, 486
MnlI	CCTC	3 cut(s)	93, 178, 373
MroXI	GAANNNNTTC	1 cut(s)	43
MseI	TTAA	3 cut(s)	323, 396, 419
MslI	CAYNNNNRTG	1 cut(s)	332
MspI	CCGG	1 cut(s)	467
MspR9I	CCNGG	4 cut(s)	36, 111, 222, 468
MvaI	CCWGG	3 cut(s)	36, 111, 222
NciI	CCSGG	1 cut(s)	468
NcoI	CCATGG	1 cut(s)	352
NdeII	GATC	1 cut(s)	67
NlaIII	CATG	3 cut(s)	140, 163, 356
NlaIV	GGNNCC	1 cut(s)	280
OliI	CACNNNNGTG	1 cut(s)	332
PceI	AGGCCT	1 cut(s)	82
PdmI	GAANNNNTTC	1 cut(s)	43
PfeI	GAWTC	1 cut(s)	197
PkrI	GCNGC	1 cut(s)	184
Psp6I	CCWGG	3 cut(s)	34, 109, 220
PspGI	CCWGG	3 cut(s)	34, 109, 220
PspN4I	GGNNCC	1 cut(s)	280
PspPI	GGNCC	1 cut(s)	125
RseI	CAYNNNNRTG	1 cut(s)	332
SaqAI	TTAA	3 cut(s)	323, 396, 419
SatI	GCNGC	1 cut(s)	183
Sau3AI	GATC	1 cut(s)	67
Sau96I	GGNCC	1 cut(s)	125
ScrFI	CCNGG	4 cut(s)	36, 111, 222, 468
SduI	GDGCHC	2 cut(s)	376, 466
SetI	ASST	7 cut(s)	28, 37, 52, 112, 130, 192, 253
SinI	GGWCC	1 cut(s)	125
SmiI	ATTTAAAT	1 cut(s)	420
SmiMI	CAYNNNNRTG	1 cut(s)	332
SmlI	CTYRAG	1 cut(s)	377
SmoI	CTYRAG	1 cut(s)	377
Sse9I	AATT	3 cut(s)	42, 240, 486
SseBI	AGGCCT	1 cut(s)	82
SsiI	CCGC	1 cut(s)	294
StuI	AGGCCT	1 cut(s)	82
StyD4I	CCNGG	4 cut(s)	34, 109, 220, 466
StyI	CCWWGG	2 cut(s)	77, 352
SwaI	ATTTAAAT	1 cut(s)	420
TaaI	ACNGT	1 cut(s)	412
TaiI	ACGT	1 cut(s)	28
TaqI	TCGA	1 cut(s)	441
TasI	AATT	3 cut(s)	42, 240, 486
TfiI	GAWTC	1 cut(s)	197
Tru1I	TTAA	3 cut(s)	323, 396, 419
Tru9I	TTAA	3 cut(s)	323, 396, 419
TscAI	CASTG	2 cut(s)	339, 406
TseI	GCWGC	1 cut(s)	182
TspDTI	ATGAA	3 cut(s)	245, 252, 354
TspGWI	ACGGA	1 cut(s)	248
TspRI	CASTG	2 cut(s)	339, 406
VneI	GTGCAC	1 cut(s)	462
VpaK11BI	GGWCC	1 cut(s)	125
XagI	CCTNNNNNAGG	1 cut(s)	172
XapI	RAATTY	1 cut(s)	42
XmnI	GAANNNNTTC	1 cut(s)	43

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.