Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006508

Physical Location & Seq

Genomic Coordinates Forward (+)

9397784 .. 9399805

Gene Structure 2022 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G25740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGTTGCAGAAGATTTCTCAGTCTATTTCTTTATGTAACGGCGATCAATTTAAGCCGTTAATATACCTCGCCGGAGCTCCGACGAACTTCATCTCTTCCCCTCTCTCAGGCAAGAAGAAATCATCTTCTCTGAGAATTAAAAGGATACAACAACTTCAAAGTACATTAGAAGATAGAATAAATCCACCACTAGTATGTGGAACAGTATCGCCACGTCTTAGTGTTCCTGATCATATACTAAAGCCTCTATATGTTGAGTCTAGCAAAGTTCCAGAGATATCAAGTGAATTACAGATTCCTGACTCTATAGGCATTGTGAAAATGAAGAAAGCGTGTGAGCTCGCGGCTCGTGTATTAGACTATGCAGGAACTTTGGTTAGACCGTTTGTTACTACAGATGAAATTGATAAAGCAGTGCATCAGATGGTTATTGAGTTTGGTGCATATCCTTCACCTCTTGGATATGGTGGATTTCCTAAAAGTGTTTGTACATCGGTTAATGAATGTATGTTTCACGGGATTCCCGATTCTCGTCCGCTACAGAATGGAGATATTATAAACATCGATGTTGCGGTTTACTTGGATGGGTATCATGGAGATACGTCAAAGACTTTCTTATGTGGAGACGTCAATGGAAGCCTTAAACAACTTGTCAAGGTCACAGAAGAATGCTTGGAGAAAGGTATATCGGTTTGTAAAGATGGAGCAAGCTTCAAACAAATCGGGAAGATAATCAGTGAGCATGCTGCAAAGTATGGCTATAATATGGAGCGATTCATCGGTCATGGTGTAGGAACGGTATTACACTCGGAACCTCTTATATATCTTCATAGTAACTATGATTATGAACTTGAATATATGATTGAAGGTCAAACTTTTACGCTCGAACCAATTCTCACCATTGGAACAACAGAGTTTGTAACATGGCCTGACAAATGGACAATTGTGACCGCAGATGGTGGTCCGGCCGCACAGTTTGAGCATACAATTCTTATTACCACCACTGGTGCAGAAATTCTCACCATATCATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0019538 GO:0031365 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M24

Protein Analysis

344

Amino Acids

37.68

Weight (kDa)

5.62

Isoelectric Point (pI)

44.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M24	PF00557	107 - 333	8e-48	Metallopeptidase family M24

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006508)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25740 AT3G25740 AT4G37040
fragaria_vesca	FvH4_1g15810 FvH4_1g15810 FvH4_1g15810 FvH4_1g15810 FvH4_1g15810 FvH4_1g15810
malus_domestica	MD00G1045000.v1.1 MD02G1169900.v1.1
prunus_persica	Prupe.7G135200_v2.0.a1 Prupe.7G135300_v2.0.a1
pyrus_communis	pycom02g13680
rosa_chinensis	RchiOBHm_Chr2g0105091 RchiOBHm_Chr5g0066781
rosa_laevigata	RLG00000017402
rosa_multiflora	Rmu_sc0005160.1_g000008
rosa_roxburghii	Rroxscaffold_2G00138430
rosa_rugosa	Rorug02G0126300
rosa_samantha	Rh2AG177000 Rh2AG177100 Rh2BG185100 Rh2CG181400 Rh2DG183200
rosa_wichuraiana	Rw2G013890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	557
AatII	GACGTC	1 cut(s)	630
AccII	CGCG	1 cut(s)	344
AciI	CCGC	5 cut(s)	344, 536, 572, 951, 969
AcoI	YGGCCR	1 cut(s)	966
AcsI	RAATTY	1 cut(s)	1014
AcyI	GRCGYC	1 cut(s)	627
AfaI	GTAC	2 cut(s)	163, 490
AfiI	CCNNNNNNNGG	1 cut(s)	107
AgsI	TTSAA	4 cut(s)	158, 715, 854, 866
AhlI	ACTAGT	1 cut(s)	190
AjiI	CACGTC	1 cut(s)	215
AluBI	AGCT	3 cut(s)	77, 340, 711
AluI	AGCT	3 cut(s)	77, 340, 711
Alw21I	GWGCWC	2 cut(s)	79, 342
Alw26I	GTCTC	1 cut(s)	618
AoxI	GGCC	2 cut(s)	926, 966
ApeKI	GCWGC	1 cut(s)	746
ApoI	RAATTY	1 cut(s)	1014
Asp700I	GAANNNNTTC	1 cut(s)	891
AspS9I	GGNCC	1 cut(s)	962
AsuHPI	GGTGA	3 cut(s)	444, 889, 1012
AvaII	GGWCC	1 cut(s)	962
BanII	GRGCYC	2 cut(s)	79, 342
BauI	CACGAG	1 cut(s)	348
Bbv12I	GWGCWC	2 cut(s)	79, 342
BbvI	GCAGC	1 cut(s)	733
BccI	CCATC	4 cut(s)	418, 578, 695, 950
BceAI	ACGGC	2 cut(s)	40, 55
BciVI	GTATCC	1 cut(s)	138
BclI	TGATCA	1 cut(s)	229
BcoDI	GTCTC	1 cut(s)	618
BcuI	ACTAGT	1 cut(s)	190
BfaI	CTAG	2 cut(s)	191, 261
BfmI	CTRYAG	3 cut(s)	306, 393, 539
BfuI	GTATCC	1 cut(s)	138
BisI	GCNGC	3 cut(s)	345, 747, 969
BlsI	GCNGC	3 cut(s)	346, 748, 970
Bme18I	GGWCC	1 cut(s)	962
BmgBI	CACGTC	1 cut(s)	215
BmgT120I	GGNCC	1 cut(s)	962
BmiI	GGNNCC	1 cut(s)	813
BmsI	GCATC	1 cut(s)	427
Bsa29I	ATCGAT	1 cut(s)	564
BsaBI	GATNNNNATC	1 cut(s)	588
BsaHI	GRCGYC	1 cut(s)	627
Bsc4I	CCNNNNNNNGG	1 cut(s)	107
Bse1I	ACTGG	1 cut(s)	1009
Bse8I	GATNNNNATC	1 cut(s)	588
BseCI	ATCGAT	1 cut(s)	564
BseGI	GGATG	1 cut(s)	589
BseJI	GATNNNNATC	1 cut(s)	588
BseLI	CCNNNNNNNGG	1 cut(s)	107
BseMII	CTCAG	3 cut(s)	32, 120, 122
BseNI	ACTGG	1 cut(s)	1009
BseX3I	CGGCCG	1 cut(s)	966
BseXI	GCAGC	1 cut(s)	733
BsgI	GTGCAG	1 cut(s)	1029
Bsh1236I	CGCG	1 cut(s)	344
Bsh1285I	CGRYCG	1 cut(s)	969
BshFI	GGCC	2 cut(s)	928, 968
BshVI	ATCGAT	1 cut(s)	564
BsiEI	CGRYCG	1 cut(s)	969
BsiHKAI	GWGCWC	2 cut(s)	79, 342
BsiSI	CCGG	2 cut(s)	72, 965
BslI	CCNNNNNNNGG	1 cut(s)	107
BsmAI	GTCTC	1 cut(s)	618
BsmBI	CGTCTC	1 cut(s)	618
BsmI	GAATGC	1 cut(s)	674
BsnI	GGCC	2 cut(s)	928, 968
Bsp1286I	GDGCHC	2 cut(s)	79, 342
Bsp1407I	TGTACA	1 cut(s)	488
Bsp143I	GATC	2 cut(s)	43, 229
BspACI	CCGC	5 cut(s)	344, 536, 572, 951, 969
BspANI	GGCC	2 cut(s)	928, 968
BspCNI	CTCAG	3 cut(s)	31, 119, 123
BspDI	ATCGAT	1 cut(s)	564
BspFNI	CGCG	1 cut(s)	344
BspHI	TCATGA	1 cut(s)	1031
BspLI	GGNNCC	1 cut(s)	813
BsrGI	TGTACA	1 cut(s)	488
BsrI	ACTGG	1 cut(s)	1009
BssMI	GATC	2 cut(s)	43, 229
BssNI	GRCGYC	1 cut(s)	627
BssSI	CACGAG	1 cut(s)	348
Bst2BI	CACGAG	1 cut(s)	348
Bst4CI	ACNGT	4 cut(s)	205, 384, 799, 975
Bst6I	CTCTTC	1 cut(s)	100
BstACI	GRCGYC	1 cut(s)	627
BstAUI	TGTACA	1 cut(s)	488
BstC8I	GCNNGC	3 cut(s)	342, 709, 744
BstDEI	CTNAG	4 cut(s)	18, 106, 131, 218
BstENI	CCTNNNNNAGG	1 cut(s)	105
BstF5I	GGATG	1 cut(s)	589
BstFNI	CGCG	1 cut(s)	344
BstKTI	GATC	2 cut(s)	46, 232
BstMAI	GTCTC	1 cut(s)	618
BstMBI	GATC	2 cut(s)	43, 229
BstMCI	CGRYCG	1 cut(s)	969
BstNSI	RCATGY	1 cut(s)	746
BstSFI	CTRYAG	3 cut(s)	306, 393, 539
BstUI	CGCG	1 cut(s)	344
BstV1I	GCAGC	1 cut(s)	733
BstZI	CGGCCG	1 cut(s)	966
Bsu15I	ATCGAT	1 cut(s)	564
BsuI	GTATCC	1 cut(s)	138
BsuRI	GGCC	2 cut(s)	928, 968
BsuTUI	ATCGAT	1 cut(s)	564
BtrI	CACGTC	1 cut(s)	215
BtsCI	GGATG	1 cut(s)	589
BtsI	GCAGTG	1 cut(s)	420
BtsIMutI	CAGTG	3 cut(s)	420, 742, 1002
Cac8I	GCNNGC	3 cut(s)	342, 709, 744
CciI	TCATGA	1 cut(s)	1031
Cfr13I	GGNCC	1 cut(s)	962
ClaI	ATCGAT	1 cut(s)	564
Csp6I	GTAC	2 cut(s)	162, 489
CviAII	CATG	5 cut(s)	593, 743, 785, 924, 1032
CviQI	GTAC	2 cut(s)	162, 489
DdeI	CTNAG	4 cut(s)	18, 106, 131, 218
DpnI	GATC	2 cut(s)	45, 231
DpnII	GATC	2 cut(s)	43, 229
EaeI	YGGCCR	1 cut(s)	966
EagI	CGGCCG	1 cut(s)	966
Eam1104I	CTCTTC	1 cut(s)	100
EarI	CTCTTC	1 cut(s)	100
Ecl136II	GAGCTC	2 cut(s)	77, 340
EclXI	CGGCCG	1 cut(s)	966
Eco24I	GRGCYC	2 cut(s)	79, 342
Eco32I	GATATC	1 cut(s)	279
Eco47I	GGWCC	1 cut(s)	962
Eco52I	CGGCCG	1 cut(s)	966
Eco53kI	GAGCTC	2 cut(s)	77, 340
EcoICRI	GAGCTC	2 cut(s)	77, 340
EcoNI	CCTNNNNNAGG	1 cut(s)	105
EcoRV	GATATC	1 cut(s)	279
EcoT38I	GRGCYC	2 cut(s)	79, 342
Esp3I	CGTCTC	1 cut(s)	618
FaeI	CATG	5 cut(s)	596, 746, 788, 927, 1035
FalI	AAGNNNNNCTT	2 cut(s)	599, 631
FatI	CATG	5 cut(s)	592, 742, 784, 923, 1031
FbaI	TGATCA	1 cut(s)	229
Fnu4HI	GCNGC	3 cut(s)	345, 747, 969
FokI	GGATG	1 cut(s)	596
FriOI	GRGCYC	2 cut(s)	79, 342
Fsp4HI	GCNGC	3 cut(s)	345, 747, 969
FspBI	CTAG	2 cut(s)	191, 261
GluI	GCNGC	3 cut(s)	345, 747, 969
HaeIII	GGCC	2 cut(s)	928, 968
HapII	CCGG	2 cut(s)	72, 965
Hin1I	GRCGYC	1 cut(s)	627
Hin1II	CATG	5 cut(s)	596, 746, 788, 927, 1035
HindIII	AAGCTT	1 cut(s)	709
HinfI	GANTC	6 cut(s)	257, 295, 302, 520, 527, 774
HpaII	CCGG	2 cut(s)	72, 965
HphI	GGTGA	3 cut(s)	444, 889, 1012
Hpy166II	GTNNAC	1 cut(s)	577
Hpy188I	TCNGA	4 cut(s)	81, 132, 423, 811
Hpy188III	TCNNGA	6 cut(s)	227, 272, 299, 524, 724, 1032
Hpy8I	GTNNAC	1 cut(s)	577
Hpy99I	CGWCG	1 cut(s)	85
HpyAV	CCTTC	2 cut(s)	459, 860
HpyCH4III	ACNGT	4 cut(s)	205, 384, 799, 975
HpyCH4IV	ACGT	3 cut(s)	214, 602, 627
HpyCH4V	TGCA	6 cut(s)	7, 365, 418, 443, 749, 1010
HpyF3I	CTNAG	4 cut(s)	18, 106, 131, 218
HpySE526I	ACGT	3 cut(s)	214, 602, 627
Hsp92I	GRCGYC	1 cut(s)	627
Hsp92II	CATG	5 cut(s)	596, 746, 788, 927, 1035
Ksp22I	TGATCA	1 cut(s)	229
Kzo9I	GATC	2 cut(s)	43, 229
LmnI	GCTCC	4 cut(s)	74, 82, 704, 769
LpnPI	CCDG	9 cut(s)	85, 93, 240, 285, 312, 351, 942, 978, 990
Lsp1109I	GCAGC	1 cut(s)	733
LweI	GCATC	1 cut(s)	427
MaeI	CTAG	2 cut(s)	191, 261
MaeII	ACGT	3 cut(s)	214, 602, 627
MaeIII	GTNAC	6 cut(s)	35, 388, 658, 833, 919, 946
MalI	GATC	2 cut(s)	45, 231
MboI	GATC	2 cut(s)	43, 229
MboII	GAAGA	9 cut(s)	22, 87, 117, 127, 182, 337, 677, 739, 818
MfeI	CAATTG	1 cut(s)	942
MhlI	GDGCHC	2 cut(s)	79, 342
MluCI	AATT	8 cut(s)	47, 135, 287, 402, 891, 942, 987, 1014
MlyI	GAGTC	2 cut(s)	266, 296
MmeI	TCCRAC	1 cut(s)	104
MnlI	CCTC	5 cut(s)	77, 111, 255, 465, 825
MroXI	GAANNNNTTC	1 cut(s)	891
MseI	TTAA	5 cut(s)	51, 59, 138, 498, 642
MslI	CAYNNNNRTG	1 cut(s)	193
MspI	CCGG	2 cut(s)	72, 965
MunI	CAATTG	1 cut(s)	942
Mva1269I	GAATGC	1 cut(s)	674
MvnI	CGCG	1 cut(s)	344
NdeII	GATC	2 cut(s)	43, 229
NlaIII	CATG	5 cut(s)	596, 746, 788, 927, 1035
NlaIV	GGNNCC	1 cut(s)	813
NmuCI	GTSAC	2 cut(s)	658, 946
NspI	RCATGY	1 cut(s)	746
PaeI	GCATGC	1 cut(s)	746
PagI	TCATGA	1 cut(s)	1031
PcsI	WCGNNNNNNNCGW	1 cut(s)	522
PctI	GAATGC	1 cut(s)	674
PdmI	GAANNNNTTC	1 cut(s)	891
PfeI	GAWTC	4 cut(s)	295, 520, 527, 774
PkrI	GCNGC	3 cut(s)	346, 748, 970
PleI	GAGTC	2 cut(s)	265, 296
PpsI	GAGTC	2 cut(s)	265, 296
PsiI	TTATAA	1 cut(s)	557
Psp124BI	GAGCTC	2 cut(s)	79, 342
PspN4I	GGNNCC	1 cut(s)	813
PspPI	GGNCC	1 cut(s)	962
RsaI	GTAC	2 cut(s)	163, 490
RsaNI	GTAC	2 cut(s)	162, 489
RseI	CAYNNNNRTG	1 cut(s)	193
SacI	GAGCTC	2 cut(s)	79, 342
SaqAI	TTAA	5 cut(s)	51, 59, 138, 498, 642
SatI	GCNGC	3 cut(s)	345, 747, 969
Sau3AI	GATC	2 cut(s)	43, 229
Sau96I	GGNCC	1 cut(s)	962
SchI	GAGTC	2 cut(s)	266, 296
SduI	GDGCHC	2 cut(s)	79, 342
SfaNI	GCATC	1 cut(s)	427
SfcI	CTRYAG	3 cut(s)	306, 393, 539
SinI	GGWCC	1 cut(s)	962
SmiMI	CAYNNNNRTG	1 cut(s)	193
SpeI	ACTAGT	1 cut(s)	190
SphI	GCATGC	1 cut(s)	746
Sse9I	AATT	8 cut(s)	47, 135, 287, 402, 891, 942, 987, 1014
SsiI	CCGC	5 cut(s)	344, 536, 572, 951, 969
SspMI	CTAG	2 cut(s)	191, 261
SstI	GAGCTC	2 cut(s)	79, 342
TaaI	ACNGT	4 cut(s)	205, 384, 799, 975
TaiI	ACGT	3 cut(s)	217, 605, 630
TaqI	TCGA	2 cut(s)	564, 885
TaqII	GACCGA	1 cut(s)	770
TasI	AATT	8 cut(s)	47, 135, 287, 402, 891, 942, 987, 1014
TatI	WGTACW	2 cut(s)	161, 488
TauI	GCSGC	2 cut(s)	347, 971
TfiI	GAWTC	4 cut(s)	295, 520, 527, 774
Tru1I	TTAA	5 cut(s)	51, 59, 138, 498, 642
Tru9I	TTAA	5 cut(s)	51, 59, 138, 498, 642
TscAI	CASTG	3 cut(s)	420, 742, 1009
TseFI	GTSAC	2 cut(s)	658, 946
TseI	GCWGC	1 cut(s)	746
Tsp45I	GTSAC	2 cut(s)	658, 946
TspDTI	ATGAA	7 cut(s)	79, 338, 414, 516, 766, 818, 861
TspRI	CASTG	3 cut(s)	420, 742, 1009
VpaK11BI	GGWCC	1 cut(s)	962
XagI	CCTNNNNNAGG	1 cut(s)	105
XapI	RAATTY	1 cut(s)	1014
XceI	RCATGY	1 cut(s)	746
XmnI	GAANNNNTTC	1 cut(s)	891
XspI	CTAG	2 cut(s)	191, 261
ZraI	GACGTC	1 cut(s)	628

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.