Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0006508

Physical Location & Seq

Genomic Coordinates Reverse (-)

10268016 .. 10275038

Gene Structure 7023 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g13680.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1245 bp

ATGCACCAAACGAGCCCATACTTACTTGGAGAAACTTTAGGTCAAAAGTTTCAATTGGGATTTAATCTCAATACGCAAAATCAAAAGAAGAGGAGGAGAGAAGTAGCGGATAAAACGGAGAGAGAGAAAGCACCAAAAGCCAGAAGCAGAAGCACAACCAGAAGCCGCGAACGCTGTAAAAAAATGGTGACAGGCGCGAGCGCAATGCGTGCTGTTCAACCCACAATCCTCTCCTCGTTTGTGGGCAACAGATTGCTTCAGTCGGCGCACCCTCTCCACCAACTCTTCGGCTTCCATCCAGGAAGCAAGCATGTGTCAATGCAGTTACCCAGAAAATTTTCTGGCTTGACAAACCTCTTGTTCAATGGAAGAAATGTAGATACAGTGGTAAACAAGCGCAAACGTCTAAGACCTGGAAAAATTTCACCTCAGCGCCCTGTTCCAGATCATATACCAAGGCCTCCTTATGTCAAATCTAAAAAATCGCCTGGAATTGCGAGTGGGCCTGAAGTGCATGATGAGAAAGGGATAGAATGCATGAGAGCCTCTGGAAGGCTAGCAGCACAGGTTCTTGAATATGCTGGAACTTTGGTCAAGCCAGGCACAAAGACAGATGAAATTGACCAAGCTGTTCACCAAATGATAATTGATAACGGGGCCTACCCTTCACCACTTGGCTATGGTGGGTTTCCAAAGAGTGTATGCACATCAGTGAATGAATGTATTTGCCATGGAATACCAGATTCCCGAGCACTTGAGGATGGTGATATAGTTAATATTGATGTTACGGTCTATTTAAATGGGTATCATGGTGATACATCAACAACTTTCTTTTGTGGAGATGTTGATAATGAGGCAAGAAAGTTAGTTCAGGTAACTAAAGAATGTCTCGACAAGGCAATCTCAATATGCGCACCAGGAGTGGAGTATAAGAAAATTGGCAAAACAATCCAAGACCATGCAGATAAAAACCGCTATGGTGTTGTTCGACAGTTCGTTGGTCATGGAGTTGGACGCGTCTTTCATGCCGATCCAGTTATTCTACACTTCAGGAACAATGATAATGGACGCATGTTATTAAACCAAACCTTCACAATAGAACCGATGCTGACAATGGGTAGCTATAATGCTGTAATGTGGGACGATAACTGGACGGTAGTCACAGAAGATGGAAGCTTGTCAGCGCAGTTCGAACATACCATTTTAATAACCGAGGATGGGGCTGAGATACTAACTCAGTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0019538 GO:0031365 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071704 GO:0097305 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M24

Protein Analysis

415

Amino Acids

45.97

Weight (kDa)

9.16

Isoelectric Point (pI)

39.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006508)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25740 AT3G25740 AT4G37040
fragaria_vesca	FvH4_1g15810 FvH4_1g15810 FvH4_1g15810 FvH4_1g15810 FvH4_1g15810 FvH4_1g15810
malus_domestica	MD00G1045000.v1.1 MD02G1169900.v1.1
prunus_persica	Prupe.7G135200_v2.0.a1 Prupe.7G135300_v2.0.a1
pyrus_communis	pycom02g13680
rosa_chinensis	RchiOBHm_Chr2g0105091 RchiOBHm_Chr5g0066781
rosa_laevigata	RLG00000017402
rosa_multiflora	Rmu_sc0005160.1_g000008
rosa_roxburghii	Rroxscaffold_2G00138430
rosa_rugosa	Rorug02G0126300
rosa_samantha	Rh2AG177000 Rh2AG177100 Rh2BG185100 Rh2CG181400 Rh2DG183200
rosa_wichuraiana	Rw2G013890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	913
AccII	CGCG	3 cut(s)	168, 197, 1017
AciI	CCGC	3 cut(s)	107, 166, 973
AclWI	GGATC	1 cut(s)	1025
AcsI	RAATTY	2 cut(s)	335, 420
AcuI	CTGAAG	3 cut(s)	242, 528, 1033
AfiI	CCNNNNNNNGG	2 cut(s)	552, 1218
AflIII	ACRYGT	1 cut(s)	1015
AgsI	TTSAA	4 cut(s)	53, 218, 364, 575
AjnI	CCWGG	5 cut(s)	298, 412, 487, 598, 916
AleI	CACNNNNGTG	1 cut(s)	710
AluBI	AGCT	3 cut(s)	629, 1122, 1176
AluI	AGCT	3 cut(s)	629, 1122, 1176
Alw21I	GWGCWC	1 cut(s)	754
Alw26I	GTCTC	1 cut(s)	893
AlwI	GGATC	1 cut(s)	1025
Ama87I	CYCGRG	1 cut(s)	747
AoxI	GGCC	3 cut(s)	458, 503, 657
ApeKI	GCWGC	1 cut(s)	560
ApoI	RAATTY	2 cut(s)	335, 420
Asp700I	GAANNNNTTC	2 cut(s)	337, 421
AspLEI	GCGC	7 cut(s)	197, 203, 268, 399, 435, 914, 1186
AspS9I	GGNCC	2 cut(s)	503, 657
AsuHPI	GGTGA	6 cut(s)	199, 417, 626, 660, 776, 824
AsuII	TTCGAA	1 cut(s)	1191
AsuNHI	GCTAGC	1 cut(s)	556
AvaI	CYCGRG	1 cut(s)	747
BaeI	ACNNNNGTAYC	2 cut(s)	372, 405
BanII	GRGCYC	1 cut(s)	17
Bbv12I	GWGCWC	1 cut(s)	754
BbvCI	CCTCAGC	1 cut(s)	429
BbvI	GCAGC	1 cut(s)	572
BccI	CCATC	4 cut(s)	303, 755, 1163, 1211
BcgI	CGANNNNNNTGC	2 cut(s)	187, 221
BciT130I	CCWGG	5 cut(s)	300, 414, 489, 600, 918
BcoDI	GTCTC	1 cut(s)	893
BfaI	CTAG	1 cut(s)	557
BfoI	RGCGCY	1 cut(s)	436
BisI	GCNGC	2 cut(s)	166, 561
BlsI	GCNGC	2 cut(s)	167, 562
Bme1390I	CCNGG	5 cut(s)	300, 414, 489, 600, 918
BmeT110I	CYCGRG	1 cut(s)	747
BmgT120I	GGNCC	2 cut(s)	503, 657
BmiI	GGNNCC	1 cut(s)	658
BmrFI	CCNGG	5 cut(s)	300, 414, 489, 600, 918
BmsI	GCATC	1 cut(s)	1095
BmtI	GCTAGC	1 cut(s)	560
BoxI	GACNNNNGTC	1 cut(s)	1157
Bpu10I	CCTNAGC	1 cut(s)	429
Bpu14I	TTCGAA	1 cut(s)	1191
BpuEI	CTTGAG	1 cut(s)	776
BsaJI	CCNNGG	3 cut(s)	455, 730, 1212
Bsc4I	CCNNNNNNNGG	2 cut(s)	552, 1218
Bse1I	ACTGG	2 cut(s)	1034, 1154
Bse3DI	GCAATG	1 cut(s)	210
BseBI	CCWGG	5 cut(s)	300, 414, 489, 600, 918
BseDI	CCNNGG	3 cut(s)	455, 730, 1212
BseGI	GGATG	3 cut(s)	295, 766, 1222
BseLI	CCNNNNNNNGG	2 cut(s)	552, 1218
BseMI	GCAATG	1 cut(s)	210
BseMII	CTCAG	2 cut(s)	443, 1215
BseNI	ACTGG	2 cut(s)	1034, 1154
BseRI	GAGGAG	3 cut(s)	106, 109, 223
BseXI	GCAGC	1 cut(s)	572
Bsh1236I	CGCG	3 cut(s)	168, 197, 1017
BshFI	GGCC	3 cut(s)	460, 505, 659
BsiHKAI	GWGCWC	1 cut(s)	754
BsiHKCI	CYCGRG	1 cut(s)	747
BslFI	GGGAC	1 cut(s)	1154
BslI	CCNNNNNNNGG	2 cut(s)	552, 1218
BsmAI	GTCTC	1 cut(s)	893
BsmFI	GGGAC	1 cut(s)	1154
BsmI	GAATGC	1 cut(s)	539
BsnI	GGCC	3 cut(s)	460, 505, 659
BsoBI	CYCGRG	1 cut(s)	747
Bsp119I	TTCGAA	1 cut(s)	1191
Bsp1286I	GDGCHC	2 cut(s)	17, 754
Bsp143I	GATC	2 cut(s)	445, 1030
Bsp19I	CCATGG	1 cut(s)	730
BspACI	CCGC	3 cut(s)	107, 166, 973
BspANI	GGCC	3 cut(s)	460, 505, 659
BspCNI	CTCAG	2 cut(s)	442, 1216
BspFNI	CGCG	3 cut(s)	168, 197, 1017
BspLI	GGNNCC	1 cut(s)	658
BspOI	GCTAGC	1 cut(s)	560
BspPI	GGATC	1 cut(s)	1025
BspT104I	TTCGAA	1 cut(s)	1191
BsrDI	GCAATG	1 cut(s)	210
BsrI	ACTGG	2 cut(s)	1034, 1154
BssECI	CCNNGG	3 cut(s)	455, 730, 1212
BssMI	GATC	2 cut(s)	445, 1030
BssT1I	CCWWGG	2 cut(s)	455, 730
Bst2UI	CCWGG	5 cut(s)	300, 414, 489, 600, 918
Bst4CI	ACNGT	4 cut(s)	385, 790, 993, 1156
Bst6I	CTCTTC	2 cut(s)	83, 290
BstAPI	GCANNNNNTGC	1 cut(s)	209
BstBI	TTCGAA	1 cut(s)	1191
BstC8I	GCNNGC	4 cut(s)	199, 210, 308, 558
BstDEI	CTNAG	4 cut(s)	407, 429, 1224, 1236
BstDSI	CCRYGG	1 cut(s)	730
BstENI	CCTNNNNNAGG	1 cut(s)	550
BstF5I	GGATG	3 cut(s)	295, 766, 1222
BstFNI	CGCG	3 cut(s)	168, 197, 1017
BstH2I	RGCGCY	1 cut(s)	436
BstHHI	GCGC	7 cut(s)	197, 203, 268, 399, 435, 914, 1186
BstKTI	GATC	2 cut(s)	448, 1033
BstMAI	GTCTC	1 cut(s)	893
BstMBI	GATC	2 cut(s)	445, 1030
BstMWI	GCNNNNNNNGC	4 cut(s)	137, 171, 209, 511
BstNI	CCWGG	5 cut(s)	300, 414, 489, 600, 918
BstNSI	RCATGY	2 cut(s)	314, 1075
BstPAI	GACNNNNGTC	1 cut(s)	1157
BstSCI	CCNGG	5 cut(s)	298, 412, 487, 598, 916
BstUI	CGCG	3 cut(s)	168, 197, 1017
BstV1I	GCAGC	1 cut(s)	572
BsuRI	GGCC	3 cut(s)	460, 505, 659
BtgI	CCRYGG	1 cut(s)	730
BtsCI	GGATG	3 cut(s)	295, 766, 1222
BtsIMutI	CAGTG	3 cut(s)	390, 717, 1244
Cac8I	GCNNGC	4 cut(s)	199, 210, 308, 558
CfoI	GCGC	7 cut(s)	197, 203, 268, 399, 435, 914, 1186
Cfr13I	GGNCC	2 cut(s)	503, 657
CseI	GACGC	3 cut(s)	1006, 1023, 1077
CviAII	CATG	9 cut(s)	311, 515, 538, 731, 809, 959, 1004, 1025, 1072
DdeI	CTNAG	4 cut(s)	407, 429, 1224, 1236
DpnI	GATC	2 cut(s)	447, 1032
DpnII	GATC	2 cut(s)	445, 1030
DraI	TTTAAA	1 cut(s)	798
Eam1104I	CTCTTC	2 cut(s)	83, 290
EarI	CTCTTC	2 cut(s)	83, 290
Eco130I	CCWWGG	2 cut(s)	455, 730
Eco147I	AGGCCT	1 cut(s)	460
Eco24I	GRGCYC	1 cut(s)	17
Eco57I	CTGAAG	3 cut(s)	242, 528, 1033
Eco88I	CYCGRG	1 cut(s)	747
EcoNI	CCTNNNNNAGG	1 cut(s)	550
EcoO109I	RGGNCCY	1 cut(s)	657
EcoRII	CCWGG	5 cut(s)	298, 412, 487, 598, 916
EcoT14I	CCWWGG	2 cut(s)	455, 730
EcoT22I	ATGCAT	1 cut(s)	539
EcoT38I	GRGCYC	1 cut(s)	17
ErhI	CCWWGG	2 cut(s)	455, 730
FaeI	CATG	9 cut(s)	314, 518, 541, 734, 812, 962, 1007, 1028, 1075
FalI	AAGNNNNNCTT	2 cut(s)	448, 480
FaqI	GGGAC	1 cut(s)	1154
FatI	CATG	9 cut(s)	310, 514, 537, 730, 808, 958, 1003, 1024, 1071
Fnu4HI	GCNGC	2 cut(s)	166, 561
FokI	GGATG	3 cut(s)	282, 773, 1229
FriOI	GRGCYC	1 cut(s)	17
Fsp4HI	GCNGC	2 cut(s)	166, 561
FspAI	RTGCGCAY	1 cut(s)	913
FspBI	CTAG	1 cut(s)	557
FspI	TGCGCA	1 cut(s)	913
GlaI	GCGC	7 cut(s)	196, 202, 267, 398, 434, 913, 1185
GluI	GCNGC	2 cut(s)	166, 561
HaeII	RGCGCY	1 cut(s)	436
HaeIII	GGCC	3 cut(s)	460, 505, 659
HgaI	GACGC	3 cut(s)	1006, 1023, 1077
HhaI	GCGC	7 cut(s)	197, 203, 268, 399, 435, 914, 1186
Hin1II	CATG	9 cut(s)	314, 518, 541, 734, 812, 962, 1007, 1028, 1075
Hin6I	GCGC	7 cut(s)	195, 201, 266, 397, 433, 912, 1184
HinP1I	GCGC	7 cut(s)	195, 201, 266, 397, 433, 912, 1184
HindIII	AAGCTT	1 cut(s)	1174
HinfI	GANTC	1 cut(s)	743
HphI	GGTGA	6 cut(s)	199, 417, 626, 660, 776, 824
Hpy166II	GTNNAC	2 cut(s)	391, 634
Hpy188III	TCNNGA	6 cut(s)	443, 549, 572, 747, 890, 1051
Hpy8I	GTNNAC	2 cut(s)	391, 634
HpyAV	CCTTC	3 cut(s)	546, 675, 1099
HpyCH4III	ACNGT	4 cut(s)	385, 790, 993, 1156
HpyCH4IV	ACGT	1 cut(s)	403
HpyCH4V	TGCA	6 cut(s)	4, 322, 514, 537, 705, 962
HpyF10VI	GCNNNNNNNGC	4 cut(s)	137, 171, 209, 511
HpyF3I	CTNAG	4 cut(s)	407, 429, 1224, 1236
HpySE526I	ACGT	1 cut(s)	403
Hsp92II	CATG	9 cut(s)	314, 518, 541, 734, 812, 962, 1007, 1028, 1075
HspAI	GCGC	7 cut(s)	195, 201, 266, 397, 433, 912, 1184
Kzo9I	GATC	2 cut(s)	445, 1030
Lsp1109I	GCAGC	1 cut(s)	572
LweI	GCATC	1 cut(s)	1095
MaeI	CTAG	1 cut(s)	557
MaeII	ACGT	1 cut(s)	403
MaeIII	GTNAC	5 cut(s)	187, 324, 784, 874, 1159
MalI	GATC	2 cut(s)	447, 1032
MboI	GATC	2 cut(s)	445, 1030
MboII	GAAGA	4 cut(s)	100, 277, 381, 1178
MfeI	CAATTG	1 cut(s)	53
MhlI	GDGCHC	2 cut(s)	17, 754
MluCI	AATT	7 cut(s)	53, 335, 420, 492, 618, 645, 936
MluI	ACGCGT	1 cut(s)	1015
MmeI	TCCRAC	1 cut(s)	991
Mph1103I	ATGCAT	1 cut(s)	539
MroXI	GAANNNNTTC	2 cut(s)	337, 421
MseI	TTAA	5 cut(s)	63, 774, 797, 1079, 1205
MslI	CAYNNNNRTG	1 cut(s)	710
MspR9I	CCNGG	5 cut(s)	300, 414, 489, 600, 918
MunI	CAATTG	1 cut(s)	53
Mva1269I	GAATGC	1 cut(s)	539
MvaI	CCWGG	5 cut(s)	300, 414, 489, 600, 918
MvnI	CGCG	3 cut(s)	168, 197, 1017
MwoI	GCNNNNNNNGC	4 cut(s)	137, 171, 209, 511
NcoI	CCATGG	1 cut(s)	730
NdeII	GATC	2 cut(s)	445, 1030
NheI	GCTAGC	1 cut(s)	556
NlaIII	CATG	9 cut(s)	314, 518, 541, 734, 812, 962, 1007, 1028, 1075
NlaIV	GGNNCC	1 cut(s)	658
NmuCI	GTSAC	2 cut(s)	187, 1159
NsbI	TGCGCA	1 cut(s)	913
NsiI	ATGCAT	1 cut(s)	539
NspI	RCATGY	2 cut(s)	314, 1075
NspV	TTCGAA	1 cut(s)	1191
OliI	CACNNNNGTG	1 cut(s)	710
PceI	AGGCCT	1 cut(s)	460
PctI	GAATGC	1 cut(s)	539
PdmI	GAANNNNTTC	2 cut(s)	337, 421
PfeI	GAWTC	1 cut(s)	743
PfoI	TCCNGGA	1 cut(s)	298
PkrI	GCNGC	2 cut(s)	167, 562
PshAI	GACNNNNGTC	1 cut(s)	1157
Psp6I	CCWGG	5 cut(s)	298, 412, 487, 598, 916
PspGI	CCWGG	5 cut(s)	298, 412, 487, 598, 916
PspN4I	GGNNCC	1 cut(s)	658
PspPI	GGNCC	2 cut(s)	503, 657
RseI	CAYNNNNRTG	1 cut(s)	710
SaqAI	TTAA	5 cut(s)	63, 774, 797, 1079, 1205
SatI	GCNGC	2 cut(s)	166, 561
Sau3AI	GATC	2 cut(s)	445, 1030
Sau96I	GGNCC	2 cut(s)	503, 657
ScrFI	CCNGG	5 cut(s)	300, 414, 489, 600, 918
SduI	GDGCHC	2 cut(s)	17, 754
SfaNI	GCATC	1 cut(s)	1095
SfuI	TTCGAA	1 cut(s)	1191
SmiI	ATTTAAAT	1 cut(s)	798
SmiMI	CAYNNNNRTG	1 cut(s)	710
SmlI	CTYRAG	1 cut(s)	755
SmoI	CTYRAG	1 cut(s)	755
Sse9I	AATT	7 cut(s)	53, 335, 420, 492, 618, 645, 936
SseBI	AGGCCT	1 cut(s)	460
SsiI	CCGC	3 cut(s)	107, 166, 973
SspI	AATATT	1 cut(s)	778
SspMI	CTAG	1 cut(s)	557
StuI	AGGCCT	1 cut(s)	460
StyD4I	CCNGG	5 cut(s)	298, 412, 487, 598, 916
StyI	CCWWGG	2 cut(s)	455, 730
SwaI	ATTTAAAT	1 cut(s)	798
TaaI	ACNGT	4 cut(s)	385, 790, 993, 1156
TaiI	ACGT	1 cut(s)	406
TaqI	TCGA	3 cut(s)	891, 988, 1191
TasI	AATT	7 cut(s)	53, 335, 420, 492, 618, 645, 936
TauI	GCSGC	1 cut(s)	168
TfiI	GAWTC	1 cut(s)	743
Tru1I	TTAA	5 cut(s)	63, 774, 797, 1079, 1205
Tru9I	TTAA	5 cut(s)	63, 774, 797, 1079, 1205
TscAI	CASTG	3 cut(s)	390, 717, 1244
TseFI	GTSAC	2 cut(s)	187, 1159
TseI	GCWGC	1 cut(s)	560
Tsp45I	GTSAC	2 cut(s)	187, 1159
TspDTI	ATGAA	3 cut(s)	630, 732, 1013
TspGWI	ACGGA	1 cut(s)	131
TspRI	CASTG	3 cut(s)	390, 717, 1244
XagI	CCTNNNNNAGG	1 cut(s)	550
XapI	RAATTY	2 cut(s)	335, 420
XceI	RCATGY	2 cut(s)	314, 1075
XmnI	GAANNNNTTC	2 cut(s)	337, 421
XspI	CTAG	1 cut(s)	557
Zsp2I	ATGCAT	1 cut(s)	539

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.