Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0009816

Physical Location & Seq

Genomic Coordinates Forward (+)

18753920 .. 18754989

Gene Structure 1070 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g24530.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGAGGAAGCAACAGCACGAAGATCTTGCAGAAGAGGAATTTACGACGATGGAGGTGACTCGAGCTGCCACGTCAGAGACGGCGGCGAGAAAGAGGAAGGCCGGCAGCGCGGACGGAGAATCAGTCGAATTGCCGTCGTCGTATGATGTGGCTCAGCACAAGAAGAGGCCGAGAAGACCCGTCGTCGTGGTTAGCAGCGCGCCGAAAATCAAGACGGAGGCAGAGAGCGTACGGACTTCCAACGACGACGTTTGGACGTCGGATCACGCGGAGAGCTCCTGCTGCTCGAGTAACGGCTCGAGCGAGCTGGAGGATGACAGTGACCAGGTCGAATCGTGGACGTATAATTCCAGCAGAGACGAAAGGAGAAAGATGACGGCGCCGACGAGCGAAGTTGGAGCAGAAGCAGATTCGACGGCGAGGCTTAAAGAGGAGTCTCAACGACGATCACCGGCGGTAGTGAACGCGTCGGAGCTCGAAGAATTCTTCGCTGCCGTGGAAAAGGAAAGCCAGCAAAAATTTAACGAGAAGTACAATTTTGATGTTTCTAAGGACGAACCGCTCGAAGGACGTTACGAGTGGGTTCGATTAAAGCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CDI

Protein Analysis

200

Amino Acids

22.43

Weight (kDa)

4.95

Isoelectric Point (pI)

63.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009816)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23430
fragaria_vesca	FvH4_1g15820 FvH4_1g15820 FvH4_1g15820
malus_domestica	MD00G1044500.v1.1 MD02G1170300.v1.1
prunus_persica	Prupe.7G135000_v2.0.a1 Prupe.7G135000_v2.0.a1
pyrus_communis	pycom15g24530
rosa_chinensis	RchiOBHm_Chr2g0105111
rosa_laevigata	RLG00000017404
rosa_multiflora	Rmu_sc0006734.1_g000001 Rmu_sc0023500.1_g000001
rosa_roxburghii	Rroxscaffold_2G00131630 Rroxscaffold_2G00138410
rosa_rugosa	Rorug02G0126300
rosa_samantha	Rh2AG177200 Rh2BG185200 Rh2CG181600 Rh2DG183300
rosa_wichuraiana	Rw2G013900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	260
AccB1I	GGYRCC	1 cut(s)	379
AccBSI	CCGCTC	1 cut(s)	562
AccII	CGCG	4 cut(s)	110, 200, 269, 467
AciI	CCGC	5 cut(s)	83, 110, 269, 455, 560
AclWI	GGATC	1 cut(s)	270
AcsI	RAATTY	3 cut(s)	38, 482, 518
AcyI	GRCGYC	2 cut(s)	257, 380
AfaI	GTAC	2 cut(s)	231, 533
AfiI	CCNNNNNNNGG	1 cut(s)	566
AflIII	ACRYGT	1 cut(s)	465
AhdI	GACNNNNNGTC	1 cut(s)	182
AjiI	CACGTC	1 cut(s)	72
AjnI	CCWGG	1 cut(s)	324
AluBI	AGCT	4 cut(s)	65, 276, 307, 475
AluI	AGCT	4 cut(s)	65, 276, 307, 475
Alw21I	GWGCWC	2 cut(s)	278, 477
Alw26I	GTCTC	3 cut(s)	71, 351, 441
AlwI	GGATC	1 cut(s)	270
Ama87I	CYCGRG	3 cut(s)	60, 286, 298
AoxI	GGCC	2 cut(s)	99, 167
ApeKI	GCWGC	5 cut(s)	65, 105, 195, 282, 491
ApoI	RAATTY	3 cut(s)	38, 482, 518
AspLEI	GCGC	4 cut(s)	110, 200, 202, 382
AsuHPI	GGTGA	2 cut(s)	67, 441
AvaI	CYCGRG	3 cut(s)	60, 286, 298
BanI	GGYRCC	1 cut(s)	379
BanII	GRGCYC	2 cut(s)	278, 477
BbsI	GAAGAC	1 cut(s)	181
Bbv12I	GWGCWC	2 cut(s)	278, 477
BbvI	GCAGC	5 cut(s)	52, 117, 207, 269, 478
BccI	CCATC	1 cut(s)	43
BceAI	ACGGC	6 cut(s)	96, 118, 310, 393, 432, 479
BcgI	CGANNNNNNTGC	2 cut(s)	8, 42
BciT130I	CCWGG	1 cut(s)	326
BcoDI	GTCTC	3 cut(s)	71, 351, 441
BfoI	RGCGCY	1 cut(s)	383
BglII	AGATCT	1 cut(s)	22
BisI	GCNGC	6 cut(s)	66, 84, 106, 196, 283, 492
BlpI	GCTNAGC	1 cut(s)	153
BlsI	GCNGC	6 cut(s)	67, 85, 107, 197, 284, 493
Bme1390I	CCNGG	1 cut(s)	326
BmeRI	GACNNNNNGTC	1 cut(s)	182
BmeT110I	CYCGRG	3 cut(s)	60, 286, 298
BmgBI	CACGTC	1 cut(s)	72
BmiI	GGNNCC	1 cut(s)	381
BmrFI	CCNGG	1 cut(s)	326
BpiI	GAAGAC	1 cut(s)	181
BpmI	CTGGAG	1 cut(s)	329
Bpu1102I	GCTNAGC	1 cut(s)	153
BsaHI	GRCGYC	2 cut(s)	257, 380
BsaJI	CCNNGG	1 cut(s)	495
BsaXI	ACNNNNNCTCC	2 cut(s)	108, 138
Bsc4I	CCNNNNNNNGG	1 cut(s)	566
Bse118I	RCCGGY	2 cut(s)	101, 451
BseBI	CCWGG	1 cut(s)	326
BseDI	CCNNGG	1 cut(s)	495
BseGI	GGATG	1 cut(s)	319
BseLI	CCNNNNNNNGG	1 cut(s)	566
BseMII	CTCAG	1 cut(s)	167
BsePI	GCGCGC	1 cut(s)	198
BseRI	GAGGAG	1 cut(s)	446
BseXI	GCAGC	5 cut(s)	52, 117, 207, 269, 478
Bsh1236I	CGCG	4 cut(s)	110, 200, 269, 467
BshFI	GGCC	2 cut(s)	101, 169
BshNI	GGYRCC	1 cut(s)	379
BsiHKAI	GWGCWC	2 cut(s)	278, 477
BsiHKCI	CYCGRG	3 cut(s)	60, 286, 298
BsiSI	CCGG	2 cut(s)	102, 452
BsiWI	CGTACG	1 cut(s)	229
BslI	CCNNNNNNNGG	1 cut(s)	566
BsmAI	GTCTC	3 cut(s)	71, 351, 441
BsmBI	CGTCTC	2 cut(s)	71, 351
BsnI	GGCC	2 cut(s)	101, 169
BsoBI	CYCGRG	3 cut(s)	60, 286, 298
Bsp1286I	GDGCHC	2 cut(s)	278, 477
Bsp143I	GATC	3 cut(s)	22, 262, 446
Bsp1720I	GCTNAGC	1 cut(s)	153
BspACI	CCGC	5 cut(s)	83, 110, 269, 455, 560
BspANI	GGCC	2 cut(s)	101, 169
BspCNI	CTCAG	1 cut(s)	166
BspFNI	CGCG	4 cut(s)	110, 200, 269, 467
BspLI	GGNNCC	1 cut(s)	381
BspPI	GGATC	1 cut(s)	270
BspT107I	GGYRCC	1 cut(s)	379
BsrBI	CCGCTC	1 cut(s)	562
BsrFI	RCCGGY	2 cut(s)	101, 451
BssAI	RCCGGY	2 cut(s)	101, 451
BssECI	CCNNGG	1 cut(s)	495
BssHII	GCGCGC	1 cut(s)	198
BssMI	GATC	3 cut(s)	22, 262, 446
BssNI	GRCGYC	2 cut(s)	257, 380
Bst2UI	CCWGG	1 cut(s)	326
Bst4CI	ACNGT	1 cut(s)	320
Bst6I	CTCTTC	2 cut(s)	27, 158
BstACI	GRCGYC	2 cut(s)	257, 380
BstC8I	GCNNGC	4 cut(s)	103, 200, 305, 512
BstDEI	CTNAG	2 cut(s)	153, 549
BstDSI	CCRYGG	1 cut(s)	495
BstF5I	GGATG	1 cut(s)	319
BstFNI	CGCG	4 cut(s)	110, 200, 269, 467
BstH2I	RGCGCY	1 cut(s)	383
BstHHI	GCGC	4 cut(s)	110, 200, 202, 382
BstKTI	GATC	3 cut(s)	25, 265, 449
BstMAI	GTCTC	3 cut(s)	71, 351, 441
BstMBI	GATC	3 cut(s)	22, 262, 446
BstMWI	GCNNNNNNNGC	2 cut(s)	107, 282
BstNI	CCWGG	1 cut(s)	326
BstSCI	CCNGG	1 cut(s)	324
BstUI	CGCG	4 cut(s)	110, 200, 269, 467
BstV1I	GCAGC	5 cut(s)	52, 117, 207, 269, 478
BstV2I	GAAGAC	1 cut(s)	181
BstX2I	RGATCY	1 cut(s)	22
BstYI	RGATCY	1 cut(s)	22
BsuRI	GGCC	2 cut(s)	101, 169
BtgI	CCRYGG	1 cut(s)	495
BtrI	CACGTC	1 cut(s)	72
BtsCI	GGATG	1 cut(s)	319
BtsIMutI	CAGTG	1 cut(s)	325
Cac8I	GCNNGC	4 cut(s)	103, 200, 305, 512
CfoI	GCGC	4 cut(s)	110, 200, 202, 382
Cfr10I	RCCGGY	2 cut(s)	101, 451
CseI	GACGC	1 cut(s)	456
CsiI	ACCWGGT	1 cut(s)	324
Csp6I	GTAC	2 cut(s)	230, 532
CviAII	CATG	1 cut(s)	597
CviQI	GTAC	2 cut(s)	230, 532
DdeI	CTNAG	2 cut(s)	153, 549
DinI	GGCGCC	1 cut(s)	381
DpnI	GATC	3 cut(s)	24, 264, 448
DpnII	GATC	3 cut(s)	22, 262, 446
DriI	GACNNNNNGTC	1 cut(s)	182
Eam1104I	CTCTTC	2 cut(s)	27, 158
Eam1105I	GACNNNNNGTC	1 cut(s)	182
EarI	CTCTTC	2 cut(s)	27, 158
Ecl136II	GAGCTC	2 cut(s)	276, 475
Eco24I	GRGCYC	2 cut(s)	278, 477
Eco53kI	GAGCTC	2 cut(s)	276, 475
Eco88I	CYCGRG	3 cut(s)	60, 286, 298
EcoICRI	GAGCTC	2 cut(s)	276, 475
EcoRI	GAATTC	1 cut(s)	482
EcoRII	CCWGG	1 cut(s)	324
EcoT38I	GRGCYC	2 cut(s)	278, 477
EgeI	GGCGCC	1 cut(s)	381
EheI	GGCGCC	1 cut(s)	381
Esp3I	CGTCTC	2 cut(s)	71, 351
FaeI	CATG	1 cut(s)	600
FaiI	YATR	3 cut(s)	144, 345, 598
FatI	CATG	1 cut(s)	596
Fnu4HI	GCNGC	6 cut(s)	66, 84, 106, 196, 283, 492
FokI	GGATG	1 cut(s)	326
FriOI	GRGCYC	2 cut(s)	278, 477
Fsp4HI	GCNGC	6 cut(s)	66, 84, 106, 196, 283, 492
GlaI	GCGC	4 cut(s)	109, 199, 201, 381
GluI	GCNGC	6 cut(s)	66, 84, 106, 196, 283, 492
GsuI	CTGGAG	1 cut(s)	329
HaeII	RGCGCY	1 cut(s)	383
HaeIII	GGCC	2 cut(s)	101, 169
HapII	CCGG	2 cut(s)	102, 452
HgaI	GACGC	1 cut(s)	456
HhaI	GCGC	4 cut(s)	110, 200, 202, 382
Hin1I	GRCGYC	2 cut(s)	257, 380
Hin1II	CATG	1 cut(s)	600
Hin6I	GCGC	4 cut(s)	108, 198, 200, 380
HinP1I	GCGC	4 cut(s)	108, 198, 200, 380
HinfI	GANTC	5 cut(s)	58, 119, 332, 410, 434
HpaII	CCGG	2 cut(s)	102, 452
HphI	GGTGA	2 cut(s)	67, 441
Hpy166II	GTNNAC	2 cut(s)	339, 463
Hpy188I	TCNGA	3 cut(s)	76, 262, 472
Hpy188III	TCNNGA	1 cut(s)	211
Hpy8I	GTNNAC	2 cut(s)	339, 463
HpyAV	CCTTC	2 cut(s)	91, 560
HpyCH4III	ACNGT	1 cut(s)	320
HpyCH4IV	ACGT	5 cut(s)	71, 249, 257, 341, 571
HpyCH4V	TGCA	1 cut(s)	29
HpyF10VI	GCNNNNNNNGC	2 cut(s)	107, 282
HpyF3I	CTNAG	2 cut(s)	153, 549
HpySE526I	ACGT	5 cut(s)	71, 249, 257, 341, 571
Hsp92I	GRCGYC	2 cut(s)	257, 380
Hsp92II	CATG	1 cut(s)	600
HspAI	GCGC	4 cut(s)	108, 198, 200, 380
KasI	GGCGCC	1 cut(s)	379
KroI	GCCGGC	1 cut(s)	101
KroNI	GCCGGC	1 cut(s)	103
Kzo9I	GATC	3 cut(s)	22, 262, 446
LmnI	GCTCC	3 cut(s)	281, 398, 472
LpnPI	CCDG	8 cut(s)	115, 292, 293, 311, 338, 364, 465, 524
Lsp1109I	GCAGC	5 cut(s)	52, 117, 207, 269, 478
MabI	ACCWGGT	1 cut(s)	324
MaeII	ACGT	5 cut(s)	71, 249, 257, 341, 571
MaeIII	GTNAC	4 cut(s)	55, 290, 320, 572
MalI	GATC	3 cut(s)	24, 264, 448
MbiI	CCGCTC	1 cut(s)	562
MboI	GATC	3 cut(s)	22, 262, 446
MboII	GAAGA	6 cut(s)	32, 44, 175, 186, 478, 491
MflI	RGATCY	1 cut(s)	22
MhlI	GDGCHC	2 cut(s)	278, 477
MluCI	AATT	6 cut(s)	38, 128, 346, 482, 518, 535
MluI	ACGCGT	1 cut(s)	465
Mly113I	GGCGCC	1 cut(s)	380
MlyI	GAGTC	2 cut(s)	52, 443
MmeI	TCCRAC	4 cut(s)	240, 264, 376, 450
MnlI	CCTC	8 cut(s)	28, 46, 87, 159, 211, 304, 414, 424
MroNI	GCCGGC	1 cut(s)	101
MseI	TTAA	3 cut(s)	426, 522, 590
MspI	CCGG	2 cut(s)	102, 452
MspR9I	CCNGG	1 cut(s)	326
MvaI	CCWGG	1 cut(s)	326
MvnI	CGCG	4 cut(s)	110, 200, 269, 467
MwoI	GCNNNNNNNGC	2 cut(s)	107, 282
NaeI	GCCGGC	1 cut(s)	103
NarI	GGCGCC	1 cut(s)	380
NdeII	GATC	3 cut(s)	22, 262, 446
NgoMIV	GCCGGC	1 cut(s)	101
NlaIII	CATG	1 cut(s)	600
NlaIV	GGNNCC	1 cut(s)	381
NmeAIII	GCCGAG	1 cut(s)	195
NmuCI	GTSAC	2 cut(s)	55, 320
PaeR7I	CTCGAG	3 cut(s)	60, 286, 298
PauI	GCGCGC	1 cut(s)	198
PcsI	WCGNNNNNNNCGW	3 cut(s)	300, 383, 561
PdiI	GCCGGC	1 cut(s)	103
PfeI	GAWTC	3 cut(s)	119, 332, 410
Pfl23II	CGTACG	1 cut(s)	229
PflFI	GACNNNGTC	1 cut(s)	326
PkrI	GCNGC	6 cut(s)	67, 85, 107, 197, 284, 493
PleI	GAGTC	2 cut(s)	52, 442
PluTI	GGCGCC	1 cut(s)	383
PpsI	GAGTC	2 cut(s)	52, 442
Psp124BI	GAGCTC	2 cut(s)	278, 477
Psp6I	CCWGG	1 cut(s)	324
PspGI	CCWGG	1 cut(s)	324
PspLI	CGTACG	1 cut(s)	229
PspN4I	GGNNCC	1 cut(s)	381
PspXI	VCTCGAGB	3 cut(s)	60, 286, 298
PsuI	RGATCY	1 cut(s)	22
PsyI	GACNNNGTC	1 cut(s)	326
PteI	GCGCGC	1 cut(s)	198
RsaI	GTAC	2 cut(s)	231, 533
RsaNI	GTAC	2 cut(s)	230, 532
SacI	GAGCTC	2 cut(s)	278, 477
SaqAI	TTAA	3 cut(s)	426, 522, 590
SatI	GCNGC	6 cut(s)	66, 84, 106, 196, 283, 492
Sau3AI	GATC	3 cut(s)	22, 262, 446
SchI	GAGTC	2 cut(s)	52, 443
ScrFI	CCNGG	1 cut(s)	326
SduI	GDGCHC	2 cut(s)	278, 477
SexAI	ACCWGGT	1 cut(s)	324
SfoI	GGCGCC	1 cut(s)	381
Sfr274I	CTCGAG	3 cut(s)	60, 286, 298
SgrAI	CRCCGGYG	1 cut(s)	451
SlaI	CTCGAG	3 cut(s)	60, 286, 298
SmlI	CTYRAG	3 cut(s)	60, 286, 298
SmoI	CTYRAG	3 cut(s)	60, 286, 298
Sse9I	AATT	6 cut(s)	38, 128, 346, 482, 518, 535
SsiI	CCGC	5 cut(s)	83, 110, 269, 455, 560
SspDI	GGCGCC	1 cut(s)	379
SstI	GAGCTC	2 cut(s)	278, 477
StyD4I	CCNGG	1 cut(s)	324
TaaI	ACNGT	1 cut(s)	320
TaiI	ACGT	5 cut(s)	74, 252, 260, 344, 574
TaqI	TCGA	9 cut(s)	61, 126, 287, 299, 330, 413, 477, 564, 586
TasI	AATT	6 cut(s)	38, 128, 346, 482, 518, 535
TatI	WGTACW	1 cut(s)	531
TauI	GCSGC	1 cut(s)	86
TfiI	GAWTC	3 cut(s)	119, 332, 410
Tru1I	TTAA	3 cut(s)	426, 522, 590
Tru9I	TTAA	3 cut(s)	426, 522, 590
TscAI	CASTG	1 cut(s)	325
TseFI	GTSAC	2 cut(s)	55, 320
TseI	GCWGC	5 cut(s)	65, 105, 195, 282, 491
Tsp45I	GTSAC	2 cut(s)	55, 320
TspGWI	ACGGA	3 cut(s)	129, 230, 247
TspRI	CASTG	1 cut(s)	325
Tth111I	GACNNNGTC	1 cut(s)	326
XapI	RAATTY	3 cut(s)	38, 482, 518
XhoI	CTCGAG	3 cut(s)	60, 286, 298
ZraI	GACGTC	1 cut(s)	258

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.