Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0009816

Physical Location & Seq

Genomic Coordinates Forward (+)

14741683 .. 14744467

Gene Structure 2785 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1170300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGGAACTGGCTAGAGCTGCCACGTCAGCTAATGCGGTGAGGAAGAGGAAGGCCGGCAGCGCGGACGGAGAATCGGTCGAATTGCCGTCGTCGTCGTCGTATGACGTCGATCAGCGCAAGAAGCCGAGACGACGCGTCGTCGTTGTGAGGAGCGCGCCGAAATTCGAGGCGGAGGCGGAGAGCGTGAGGACGTCGAACGACGATTTTTCGACGTCGGATCACGCGGAGAGCTCCTGCTGCTCGAGTAACGGCTCGAGCGTGCTTGTGGAAGATAGAAAATTCGAGTTCGTAGATCCGGAGGCGGATGAGAGTGAACAGGTCGAATCGTCGACGTATAATTCCAGCAGAGATGAAAGGAGAGAGATGACGGCGCCGACGAGCGAAGTTCGAGCGGAAGCAGAATCGACGGCGGAACCAAAGGAGGTGGAGTCTCAACGACGATCACCACCGGTAGTGAATGTGTCGGAGCTCGAAGAATTCTTCGCTGCCACGGAGAAGGAAAGCCAACAAAAATTTATTGAGAAGTATAATTATGATGTTGTGAAGGACGAGCCCCTCGAAGGACGATACGAGTGGATTCGATTGAAGCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000079 GO:0001673 GO:0001932 GO:0001933 GO:0003674 GO:0004857 GO:0004860 GO:0004861 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006469 GO:0008150 GO:0009892 GO:0010563 GO:0010605 GO:0016538 GO:0019207 GO:0019210 GO:0019220 GO:0019222 GO:0019887 GO:0030234 GO:0030291 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0032268 GO:0032269 GO:0033673 GO:0042325 GO:0042326 GO:0043073 GO:0043086 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043549 GO:0044092 GO:0044424 GO:0044464 GO:0045736 GO:0045786 GO:0045859 GO:0045936 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051172 GO:0051174 GO:0051246 GO:0051248 GO:0051338 GO:0051348 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0071900 GO:0071901 GO:0080090 GO:0098772 GO:1904029 GO:1904030

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CDI

Protein Analysis

198

Amino Acids

22.19

Weight (kDa)

4.8

Isoelectric Point (pI)

63.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CDI	PF02234	152 - 194	1.9e-16	Cyclin-dependent kinase inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009816)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23430
fragaria_vesca	FvH4_1g15820 FvH4_1g15820 FvH4_1g15820
malus_domestica	MD00G1044500.v1.1 MD02G1170300.v1.1
prunus_persica	Prupe.7G135000_v2.0.a1 Prupe.7G135000_v2.0.a1
pyrus_communis	pycom15g24530
rosa_chinensis	RchiOBHm_Chr2g0105111
rosa_laevigata	RLG00000017404
rosa_multiflora	Rmu_sc0006734.1_g000001 Rmu_sc0023500.1_g000001
rosa_roxburghii	Rroxscaffold_2G00131630 Rroxscaffold_2G00138410
rosa_rugosa	Rorug02G0126300
rosa_samantha	Rh2AG177200 Rh2BG185200 Rh2CG181600 Rh2DG183300
rosa_wichuraiana	Rw2G013900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	3 cut(s)	108, 194, 215
AccB1I	GGYRCC	1 cut(s)	370
AccBSI	CCGCTC	1 cut(s)	392
AccI	GTMKAC	1 cut(s)	329
AccII	CGCG	4 cut(s)	62, 135, 155, 224
AccIII	TCCGGA	1 cut(s)	295
AciI	CCGC	8 cut(s)	35, 62, 170, 176, 224, 302, 392, 410
AclWI	GGATC	2 cut(s)	225, 287
AcsI	RAATTY	4 cut(s)	161, 278, 476, 512
AcyI	GRCGYC	4 cut(s)	105, 191, 212, 371
AfiI	CCNNNNNNNGG	1 cut(s)	560
AflIII	ACRYGT	1 cut(s)	133
AgeI	ACCGGT	1 cut(s)	448
AgsI	TTSAA	1 cut(s)	586
AhdI	GACNNNNNGTC	2 cut(s)	134, 137
AjiI	CACGTC	1 cut(s)	24
AluBI	AGCT	4 cut(s)	17, 29, 231, 469
AluI	AGCT	4 cut(s)	17, 29, 231, 469
Alw21I	GWGCWC	2 cut(s)	233, 471
Alw26I	GTCTC	2 cut(s)	121, 435
AlwI	GGATC	2 cut(s)	225, 287
Ama87I	CYCGRG	2 cut(s)	241, 253
Aor13HI	TCCGGA	1 cut(s)	295
AoxI	GGCC	1 cut(s)	51
ApeKI	GCWGC	4 cut(s)	17, 57, 237, 485
ApoI	RAATTY	4 cut(s)	161, 278, 476, 512
AsiGI	ACCGGT	1 cut(s)	448
AspLEI	GCGC	5 cut(s)	62, 117, 155, 157, 373
AsuHPI	GGTGA	2 cut(s)	49, 435
AvaI	CYCGRG	2 cut(s)	241, 253
BanI	GGYRCC	1 cut(s)	370
BanII	GRGCYC	3 cut(s)	233, 471, 555
Bbv12I	GWGCWC	2 cut(s)	233, 471
BbvI	GCAGC	4 cut(s)	4, 69, 224, 472
BceAI	ACGGC	4 cut(s)	70, 265, 384, 423
BcoDI	GTCTC	2 cut(s)	121, 435
BfaI	CTAG	1 cut(s)	12
BfoI	RGCGCY	1 cut(s)	374
BisI	GCNGC	4 cut(s)	18, 58, 238, 486
BlsI	GCNGC	4 cut(s)	19, 59, 239, 487
BmeRI	GACNNNNNGTC	2 cut(s)	134, 137
BmeT110I	CYCGRG	2 cut(s)	241, 253
BmgBI	CACGTC	1 cut(s)	24
BmiI	GGNNCC	2 cut(s)	372, 414
BsaHI	GRCGYC	4 cut(s)	105, 191, 212, 371
BsaJI	CCNNGG	1 cut(s)	489
BsaWI	WCCGGW	2 cut(s)	295, 448
BsaXI	ACNNNNNCTCC	4 cut(s)	60, 90, 413, 443
Bsc4I	CCNNNNNNNGG	1 cut(s)	560
Bse118I	RCCGGY	2 cut(s)	53, 448
Bse1I	ACTGG	1 cut(s)	12
BseAI	TCCGGA	1 cut(s)	295
BseDI	CCNNGG	1 cut(s)	489
BseGI	GGATG	1 cut(s)	310
BseLI	CCNNNNNNNGG	1 cut(s)	560
BseNI	ACTGG	1 cut(s)	12
BsePI	GCGCGC	1 cut(s)	153
BseRI	GAGGAG	1 cut(s)	163
BseXI	GCAGC	4 cut(s)	4, 69, 224, 472
Bsh1236I	CGCG	4 cut(s)	62, 135, 155, 224
Bsh1285I	CGRYCG	1 cut(s)	78
BshFI	GGCC	1 cut(s)	53
BshNI	GGYRCC	1 cut(s)	370
BshTI	ACCGGT	1 cut(s)	448
BsiEI	CGRYCG	1 cut(s)	78
BsiHKAI	GWGCWC	2 cut(s)	233, 471
BsiHKCI	CYCGRG	2 cut(s)	241, 253
BsiSI	CCGG	3 cut(s)	54, 296, 449
BslI	CCNNNNNNNGG	1 cut(s)	560
BsmAI	GTCTC	2 cut(s)	121, 435
BsmBI	CGTCTC	1 cut(s)	121
BsnI	GGCC	1 cut(s)	53
BsoBI	CYCGRG	2 cut(s)	241, 253
Bsp1286I	GDGCHC	3 cut(s)	233, 471, 555
Bsp13I	TCCGGA	1 cut(s)	295
Bsp143I	GATC	4 cut(s)	109, 217, 292, 440
BspACI	CCGC	8 cut(s)	35, 62, 170, 176, 224, 302, 392, 410
BspANI	GGCC	1 cut(s)	53
BspEI	TCCGGA	1 cut(s)	295
BspFNI	CGCG	4 cut(s)	62, 135, 155, 224
BspLI	GGNNCC	2 cut(s)	372, 414
BspPI	GGATC	2 cut(s)	225, 287
BspT107I	GGYRCC	1 cut(s)	370
BsrBI	CCGCTC	1 cut(s)	392
BsrFI	RCCGGY	2 cut(s)	53, 448
BsrI	ACTGG	1 cut(s)	12
BssAI	RCCGGY	2 cut(s)	53, 448
BssECI	CCNNGG	1 cut(s)	489
BssHII	GCGCGC	1 cut(s)	153
BssMI	GATC	4 cut(s)	109, 217, 292, 440
BssNI	GRCGYC	4 cut(s)	105, 191, 212, 371
Bst6I	CTCTTC	1 cut(s)	38
BstACI	GRCGYC	4 cut(s)	105, 191, 212, 371
BstC8I	GCNNGC	3 cut(s)	55, 155, 260
BstDSI	CCRYGG	1 cut(s)	489
BstF5I	GGATG	1 cut(s)	310
BstFNI	CGCG	4 cut(s)	62, 135, 155, 224
BstH2I	RGCGCY	1 cut(s)	374
BstHHI	GCGC	5 cut(s)	62, 117, 155, 157, 373
BstKTI	GATC	4 cut(s)	112, 220, 295, 443
BstMAI	GTCTC	2 cut(s)	121, 435
BstMBI	GATC	4 cut(s)	109, 217, 292, 440
BstMCI	CGRYCG	1 cut(s)	78
BstMWI	GCNNNNNNNGC	5 cut(s)	17, 26, 59, 121, 237
BstUI	CGCG	4 cut(s)	62, 135, 155, 224
BstV1I	GCAGC	4 cut(s)	4, 69, 224, 472
BstX2I	RGATCY	1 cut(s)	292
BstYI	RGATCY	1 cut(s)	292
BsuRI	GGCC	1 cut(s)	53
BtgI	CCRYGG	1 cut(s)	489
BtrI	CACGTC	1 cut(s)	24
BtsCI	GGATG	1 cut(s)	310
Cac8I	GCNNGC	3 cut(s)	55, 155, 260
CfoI	GCGC	5 cut(s)	62, 117, 155, 157, 373
Cfr10I	RCCGGY	2 cut(s)	53, 448
CseI	GACGC	2 cut(s)	124, 141
CspAI	ACCGGT	1 cut(s)	448
CspCI	CAANNNNNGTGG	2 cut(s)	405, 440
CviAII	CATG	1 cut(s)	591
DinI	GGCGCC	1 cut(s)	372
DpnI	GATC	4 cut(s)	111, 219, 294, 442
DpnII	GATC	4 cut(s)	109, 217, 292, 440
DriI	GACNNNNNGTC	2 cut(s)	134, 137
Eam1104I	CTCTTC	1 cut(s)	38
Eam1105I	GACNNNNNGTC	2 cut(s)	134, 137
EarI	CTCTTC	1 cut(s)	38
EciI	GGCGGA	4 cut(s)	185, 191, 317, 425
Ecl136II	GAGCTC	2 cut(s)	231, 469
Eco24I	GRGCYC	3 cut(s)	233, 471, 555
Eco53kI	GAGCTC	2 cut(s)	231, 469
Eco88I	CYCGRG	2 cut(s)	241, 253
EcoICRI	GAGCTC	2 cut(s)	231, 469
EcoRI	GAATTC	1 cut(s)	476
EcoT38I	GRGCYC	3 cut(s)	233, 471, 555
EgeI	GGCGCC	1 cut(s)	372
EheI	GGCGCC	1 cut(s)	372
Esp3I	CGTCTC	1 cut(s)	121
FaeI	CATG	1 cut(s)	594
FaiI	YATR	5 cut(s)	102, 336, 528, 534, 592
FatI	CATG	1 cut(s)	590
FblI	GTMKAC	1 cut(s)	329
Fnu4HI	GCNGC	4 cut(s)	18, 58, 238, 486
FokI	GGATG	1 cut(s)	317
FriOI	GRGCYC	3 cut(s)	233, 471, 555
Fsp4HI	GCNGC	4 cut(s)	18, 58, 238, 486
FspBI	CTAG	1 cut(s)	12
GlaI	GCGC	5 cut(s)	61, 116, 154, 156, 372
GluI	GCNGC	4 cut(s)	18, 58, 238, 486
HaeII	RGCGCY	1 cut(s)	374
HaeIII	GGCC	1 cut(s)	53
HapII	CCGG	3 cut(s)	54, 296, 449
HgaI	GACGC	2 cut(s)	124, 141
HhaI	GCGC	5 cut(s)	62, 117, 155, 157, 373
Hin1I	GRCGYC	4 cut(s)	105, 191, 212, 371
Hin1II	CATG	1 cut(s)	594
Hin6I	GCGC	5 cut(s)	60, 115, 153, 155, 371
HinP1I	GCGC	5 cut(s)	60, 115, 153, 155, 371
HincII	GTYRAC	1 cut(s)	330
HindII	GTYRAC	1 cut(s)	330
HinfI	GANTC	5 cut(s)	71, 323, 401, 428, 577
HpaII	CCGG	3 cut(s)	54, 296, 449
HphI	GGTGA	2 cut(s)	49, 435
Hpy166II	GTNNAC	2 cut(s)	314, 330
Hpy188I	TCNGA	2 cut(s)	217, 466
Hpy188III	TCNNGA	1 cut(s)	296
Hpy8I	GTNNAC	2 cut(s)	314, 330
HpyAV	CCTTC	4 cut(s)	43, 490, 538, 554
HpyCH4IV	ACGT	5 cut(s)	23, 105, 191, 212, 332
HpyF10VI	GCNNNNNNNGC	5 cut(s)	17, 26, 59, 121, 237
HpySE526I	ACGT	5 cut(s)	23, 105, 191, 212, 332
Hsp92I	GRCGYC	4 cut(s)	105, 191, 212, 371
Hsp92II	CATG	1 cut(s)	594
HspAI	GCGC	5 cut(s)	60, 115, 153, 155, 371
KasI	GGCGCC	1 cut(s)	370
Kpn2I	TCCGGA	1 cut(s)	295
KroI	GCCGGC	1 cut(s)	53
KroNI	GCCGGC	1 cut(s)	55
Kzo9I	GATC	4 cut(s)	109, 217, 292, 440
LmnI	GCTCC	3 cut(s)	150, 236, 466
LpnPI	CCDG	6 cut(s)	67, 247, 302, 309, 355, 462
Lsp1109I	GCAGC	4 cut(s)	4, 69, 224, 472
MaeI	CTAG	1 cut(s)	12
MaeII	ACGT	5 cut(s)	23, 105, 191, 212, 332
MaeIII	GTNAC	1 cut(s)	245
MalI	GATC	4 cut(s)	111, 219, 294, 442
MbiI	CCGCTC	1 cut(s)	392
MboI	GATC	4 cut(s)	109, 217, 292, 440
MboII	GAAGA	4 cut(s)	55, 281, 472, 485
MflI	RGATCY	1 cut(s)	292
MhlI	GDGCHC	3 cut(s)	233, 471, 555
MluCI	AATT	7 cut(s)	80, 161, 278, 337, 476, 512, 529
MluI	ACGCGT	1 cut(s)	133
Mly113I	GGCGCC	1 cut(s)	371
MlyI	GAGTC	1 cut(s)	437
MmeI	TCCRAC	2 cut(s)	195, 444
MnlI	CCTC	9 cut(s)	33, 39, 141, 160, 166, 180, 292, 415, 566
MroI	TCCGGA	1 cut(s)	295
MroNI	GCCGGC	1 cut(s)	53
MspI	CCGG	3 cut(s)	54, 296, 449
MvnI	CGCG	4 cut(s)	62, 135, 155, 224
MwoI	GCNNNNNNNGC	5 cut(s)	17, 26, 59, 121, 237
NaeI	GCCGGC	1 cut(s)	55
NarI	GGCGCC	1 cut(s)	371
NdeII	GATC	4 cut(s)	109, 217, 292, 440
NgoMIV	GCCGGC	1 cut(s)	53
NlaIII	CATG	1 cut(s)	594
NlaIV	GGNNCC	2 cut(s)	372, 414
NmeAIII	GCCGAG	1 cut(s)	150
PaeR7I	CTCGAG	2 cut(s)	241, 253
PauI	GCGCGC	1 cut(s)	153
PcsI	WCGNNNNNNNCGW	4 cut(s)	95, 255, 374, 555
PdiI	GCCGGC	1 cut(s)	55
PfeI	GAWTC	4 cut(s)	71, 323, 401, 577
PinAI	ACCGGT	1 cut(s)	448
PkrI	GCNGC	4 cut(s)	19, 59, 239, 487
PleI	GAGTC	1 cut(s)	436
PluTI	GGCGCC	1 cut(s)	374
PpsI	GAGTC	1 cut(s)	436
Psp124BI	GAGCTC	2 cut(s)	233, 471
PspN4I	GGNNCC	2 cut(s)	372, 414
PspXI	VCTCGAGB	2 cut(s)	241, 253
PsuI	RGATCY	1 cut(s)	292
PteI	GCGCGC	1 cut(s)	153
SacI	GAGCTC	2 cut(s)	233, 471
SalI	GTCGAC	1 cut(s)	328
SatI	GCNGC	4 cut(s)	18, 58, 238, 486
Sau3AI	GATC	4 cut(s)	109, 217, 292, 440
SchI	GAGTC	1 cut(s)	437
SduI	GDGCHC	3 cut(s)	233, 471, 555
SfoI	GGCGCC	1 cut(s)	372
Sfr274I	CTCGAG	2 cut(s)	241, 253
SgrDI	CGTCGACG	1 cut(s)	328
SlaI	CTCGAG	2 cut(s)	241, 253
SmlI	CTYRAG	2 cut(s)	241, 253
SmoI	CTYRAG	2 cut(s)	241, 253
Sse9I	AATT	7 cut(s)	80, 161, 278, 337, 476, 512, 529
SsiI	CCGC	8 cut(s)	35, 62, 170, 176, 224, 302, 392, 410
SspDI	GGCGCC	1 cut(s)	370
SspMI	CTAG	1 cut(s)	12
SstI	GAGCTC	2 cut(s)	233, 471
TaiI	ACGT	5 cut(s)	26, 108, 194, 215, 335
TaqII	GACCGA	1 cut(s)	64
TasI	AATT	7 cut(s)	80, 161, 278, 337, 476, 512, 529
TfiI	GAWTC	4 cut(s)	71, 323, 401, 577
TseI	GCWGC	4 cut(s)	17, 57, 237, 485
TspDTI	ATGAA	1 cut(s)	366
TspGWI	ACGGA	2 cut(s)	81, 506
XapI	RAATTY	4 cut(s)	161, 278, 476, 512
XhoI	CTCGAG	2 cut(s)	241, 253
XmiI	GTMKAC	1 cut(s)	329
XspI	CTAG	1 cut(s)	12
ZraI	GACGTC	3 cut(s)	106, 192, 213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.