Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006734.1

Orthogroup ID

OG0009816

Physical Location & Seq

Genomic Coordinates Forward (+)

11335 .. 12740

Gene Structure 1406 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006734.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

atgttcggtgctgtccagatctacgtaacggcgccgtcaaatcccccgtttccagattccccatcactgttaccggaccgtccaactcacctcgccatcgtcgtcaccgtcattaccatcttcaccacagcccaaactcgcacaacccctaaattgaaaacacacgacgacagaaaagcagcgataacatcaaaccaatctgtacagagatggcgaccgagtgacactcgtcatcggaaatttttaagtgcagtgccgatggaggccaagacggcggaaaccagctcagtcaagaagaggaaggtggaagttgcacagttggtcaaatccaaactcgttcacctcgacaagaagccgagacctagtgttgaaactatatcgaaagtagcagagggaagagagtgtactgatgttgctactgttcgggaaccagaggaggaagatgatgacgccgtttgcgccagccctaggagctcaggctccgatgatcacgtcgacgacacctcctgttgctcgagtaacggctcgagtgagctggtggaagatggacataacctcaaattcgtagatctggtggaggatttaggtgatgatgttgagagtgacgaagttgaatcgcggacgtataatccactcagagaaaggagaaagatgacgccttctagcaacattcaacctcaaccaacgccggcggaacctcggcggggttccacggcagagaaaatgcctacagaattggagctggaagaattcttcacgtcggccgagaaagacgtccaaaataaattttcacagaaatataactacgatctaacgaaggacgagccgttggaaggacgttacgaatggactcgattaaagccatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CDI

Protein Analysis

288

Amino Acids

32.33

Weight (kDa)

5.35

Isoelectric Point (pI)

52.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009816)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23430
fragaria_vesca	FvH4_1g15820 FvH4_1g15820 FvH4_1g15820
malus_domestica	MD00G1044500.v1.1 MD02G1170300.v1.1
prunus_persica	Prupe.7G135000_v2.0.a1 Prupe.7G135000_v2.0.a1
pyrus_communis	pycom15g24530
rosa_chinensis	RchiOBHm_Chr2g0105111
rosa_laevigata	RLG00000017404
rosa_multiflora	Rmu_sc0006734.1_g000001 Rmu_sc0023500.1_g000001
rosa_roxburghii	Rroxscaffold_2G00131630 Rroxscaffold_2G00138410
rosa_rugosa	Rorug02G0126300
rosa_samantha	Rh2AG177200 Rh2BG185200 Rh2CG181600 Rh2DG183300
rosa_wichuraiana	Rw2G013900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	777
AccB1I	GGYRCC	1 cut(s)	31
AccI	GTMKAC	1 cut(s)	495
AccII	CGCG	1 cut(s)	619
AciI	CCGC	4 cut(s)	275, 619, 692, 703
AcoI	YGGCCR	1 cut(s)	762
AcsI	RAATTY	4 cut(s)	239, 560, 749, 785
AcyI	GRCGYC	4 cut(s)	32, 450, 656, 774
AfaI	GTAC	2 cut(s)	204, 406
AfiI	CCNNNNNNNGG	3 cut(s)	468, 704, 833
AgsI	TTSAA	4 cut(s)	157, 371, 614, 674
AjiI	CACGTC	2 cut(s)	493, 759
AluBI	AGCT	4 cut(s)	285, 474, 535, 742
AluI	AGCT	4 cut(s)	285, 474, 535, 742
Alw21I	GWGCWC	1 cut(s)	476
Alw26I	GTCTC	1 cut(s)	352
Ama87I	CYCGRG	2 cut(s)	514, 526
AoxI	GGCC	2 cut(s)	264, 762
ApeKI	GCWGC	1 cut(s)	179
ApoI	RAATTY	4 cut(s)	239, 560, 749, 785
AspA2I	CCTAGG	1 cut(s)	467
AspLEI	GCGC	2 cut(s)	34, 461
AspS9I	GGNCC	1 cut(s)	76
AsuHPI	GGTGA	5 cut(s)	80, 97, 115, 332, 599
AvaI	CYCGRG	2 cut(s)	514, 526
AvaII	GGWCC	1 cut(s)	76
AvrII	CCTAGG	1 cut(s)	467
BanI	GGYRCC	1 cut(s)	31
BanII	GRGCYC	1 cut(s)	476
BarI	GAAGNNNNNNTAC	2 cut(s)	388, 420
Bbv12I	GWGCWC	1 cut(s)	476
BbvI	GCAGC	1 cut(s)	191
BccI	CCATC	6 cut(s)	70, 104, 125, 204, 253, 539
BceAI	ACGGC	7 cut(s)	19, 45, 288, 437, 538, 729, 811
BclI	TGATCA	1 cut(s)	487
BcoDI	GTCTC	1 cut(s)	352
BfaI	CTAG	3 cut(s)	363, 468, 663
BfmI	CTRYAG	1 cut(s)	729
BfoI	RGCGCY	1 cut(s)	35
BglI	GCCNNNNNGGC	1 cut(s)	272
BglII	AGATCT	2 cut(s)	18, 568
BisI	GCNGC	1 cut(s)	180
BlnI	CCTAGG	1 cut(s)	467
BlsI	GCNGC	1 cut(s)	181
Bme18I	GGWCC	1 cut(s)	76
BmeT110I	CYCGRG	2 cut(s)	514, 526
BmgBI	CACGTC	2 cut(s)	493, 759
BmgT120I	GGNCC	1 cut(s)	76
BmiI	GGNNCC	5 cut(s)	33, 429, 481, 696, 709
BoxI	GACNNNNGTC	1 cut(s)	228
BplI	GAGNNNNNCTC	2 cut(s)	211, 243
Bpu10I	CCTNAGC	1 cut(s)	475
BsaAI	YACGTR	1 cut(s)	25
BsaHI	GRCGYC	4 cut(s)	32, 450, 656, 774
BsaI	GGTCTC	1 cut(s)	352
BsaJI	CCNNGG	3 cut(s)	467, 698, 711
BsaWI	WCCGGW	1 cut(s)	73
BsaXI	ACNNNNNCTCC	2 cut(s)	488, 518
Bsc4I	CCNNNNNNNGG	3 cut(s)	468, 704, 833
Bse118I	RCCGGY	1 cut(s)	688
BseDI	CCNNGG	3 cut(s)	467, 698, 711
BseLI	CCNNNNNNNGG	3 cut(s)	468, 704, 833
BseMII	CTCAG	3 cut(s)	300, 489, 649
BseRI	GAGGAG	1 cut(s)	449
BseX3I	CGGCCG	1 cut(s)	762
BseXI	GCAGC	1 cut(s)	191
BsgI	GTGCAG	1 cut(s)	270
Bsh1236I	CGCG	1 cut(s)	619
Bsh1285I	CGRYCG	2 cut(s)	218, 765
BshFI	GGCC	2 cut(s)	266, 764
BshNI	GGYRCC	1 cut(s)	31
BsiEI	CGRYCG	2 cut(s)	218, 765
BsiHKAI	GWGCWC	1 cut(s)	476
BsiHKCI	CYCGRG	2 cut(s)	514, 526
BsiSI	CCGG	2 cut(s)	74, 689
BslI	CCNNNNNNNGG	3 cut(s)	468, 704, 833
BsmAI	GTCTC	1 cut(s)	352
BsnI	GGCC	2 cut(s)	266, 764
Bso31I	GGTCTC	1 cut(s)	352
BsoBI	CYCGRG	2 cut(s)	514, 526
Bsp1286I	GDGCHC	1 cut(s)	476
Bsp1407I	TGTACA	1 cut(s)	202
Bsp143I	GATC	4 cut(s)	18, 487, 568, 808
BspACI	CCGC	4 cut(s)	275, 619, 692, 703
BspANI	GGCC	2 cut(s)	266, 764
BspCNI	CTCAG	3 cut(s)	299, 488, 648
BspFNI	CGCG	1 cut(s)	619
BspLI	GGNNCC	5 cut(s)	33, 429, 481, 696, 709
BspT107I	GGYRCC	1 cut(s)	31
BspTNI	GGTCTC	1 cut(s)	352
BsrFI	RCCGGY	1 cut(s)	688
BsrGI	TGTACA	1 cut(s)	202
BssAI	RCCGGY	1 cut(s)	688
BssECI	CCNNGG	3 cut(s)	467, 698, 711
BssMI	GATC	4 cut(s)	18, 487, 568, 808
BssNI	GRCGYC	4 cut(s)	32, 450, 656, 774
BssT1I	CCWWGG	1 cut(s)	467
Bst4CI	ACNGT	5 cut(s)	69, 80, 109, 318, 421
Bst6I	CTCTTC	2 cut(s)	290, 391
BstACI	GRCGYC	4 cut(s)	32, 450, 656, 774
BstAUI	TGTACA	1 cut(s)	202
BstBAI	YACGTR	1 cut(s)	25
BstC8I	GCNNGC	2 cut(s)	463, 690
BstDEI	CTNAG	3 cut(s)	286, 475, 635
BstDSI	CCRYGG	1 cut(s)	711
BstFNI	CGCG	1 cut(s)	619
BstH2I	RGCGCY	1 cut(s)	35
BstHHI	GCGC	2 cut(s)	34, 461
BstKTI	GATC	4 cut(s)	21, 490, 571, 811
BstMAI	GTCTC	1 cut(s)	352
BstMBI	GATC	4 cut(s)	18, 487, 568, 808
BstMCI	CGRYCG	2 cut(s)	218, 765
BstMWI	GCNNNNNNNGC	3 cut(s)	272, 458, 471
BstPAI	GACNNNNGTC	1 cut(s)	228
BstSFI	CTRYAG	1 cut(s)	729
BstSNI	TACGTA	1 cut(s)	25
BstUI	CGCG	1 cut(s)	619
BstV1I	GCAGC	1 cut(s)	191
BstX2I	RGATCY	2 cut(s)	18, 568
BstYI	RGATCY	2 cut(s)	18, 568
BstZI	CGGCCG	1 cut(s)	762
BsuRI	GGCC	2 cut(s)	266, 764
BtgI	CCRYGG	1 cut(s)	711
BtrI	CACGTC	2 cut(s)	493, 759
BtsI	GCAGTG	1 cut(s)	258
BtsIMutI	CAGTG	2 cut(s)	65, 258
Cac8I	GCNNGC	2 cut(s)	463, 690
CfoI	GCGC	2 cut(s)	34, 461
Cfr10I	RCCGGY	1 cut(s)	688
Cfr13I	GGNCC	1 cut(s)	76
CpoI	CGGWCCG	1 cut(s)	76
CseI	GACGC	2 cut(s)	458, 664
Csp6I	GTAC	2 cut(s)	203, 405
CspI	CGGWCCG	1 cut(s)	76
CviQI	GTAC	2 cut(s)	203, 405
DdeI	CTNAG	3 cut(s)	286, 475, 635
DinI	GGCGCC	1 cut(s)	33
DpnI	GATC	4 cut(s)	20, 489, 570, 810
DpnII	GATC	4 cut(s)	18, 487, 568, 808
EaeI	YGGCCR	1 cut(s)	762
EagI	CGGCCG	1 cut(s)	762
Eam1104I	CTCTTC	2 cut(s)	290, 391
EarI	CTCTTC	2 cut(s)	290, 391
EciI	GGCGGA	2 cut(s)	290, 707
Ecl136II	GAGCTC	1 cut(s)	474
EclXI	CGGCCG	1 cut(s)	762
Eco105I	TACGTA	1 cut(s)	25
Eco130I	CCWWGG	1 cut(s)	467
Eco24I	GRGCYC	1 cut(s)	476
Eco31I	GGTCTC	1 cut(s)	352
Eco47I	GGWCC	1 cut(s)	76
Eco52I	CGGCCG	1 cut(s)	762
Eco53kI	GAGCTC	1 cut(s)	474
Eco88I	CYCGRG	2 cut(s)	514, 526
EcoICRI	GAGCTC	1 cut(s)	474
EcoRI	GAATTC	1 cut(s)	749
EcoT14I	CCWWGG	1 cut(s)	467
EcoT38I	GRGCYC	1 cut(s)	476
EgeI	GGCGCC	1 cut(s)	33
EheI	GGCGCC	1 cut(s)	33
ErhI	CCWWGG	1 cut(s)	467
FaiI	YATR	5 cut(s)	377, 552, 627, 801, 865
FauI	CCCGC	1 cut(s)	696
FbaI	TGATCA	1 cut(s)	487
FblI	GTMKAC	1 cut(s)	495
Fnu4HI	GCNGC	1 cut(s)	180
FriOI	GRGCYC	1 cut(s)	476
Fsp4HI	GCNGC	1 cut(s)	180
FspBI	CTAG	3 cut(s)	363, 468, 663
GlaI	GCGC	2 cut(s)	33, 460
GluI	GCNGC	1 cut(s)	180
HaeII	RGCGCY	1 cut(s)	35
HaeIII	GGCC	2 cut(s)	266, 764
HapII	CCGG	2 cut(s)	74, 689
HgaI	GACGC	2 cut(s)	458, 664
HhaI	GCGC	2 cut(s)	34, 461
Hin1I	GRCGYC	4 cut(s)	32, 450, 656, 774
Hin6I	GCGC	2 cut(s)	32, 459
HinP1I	GCGC	2 cut(s)	32, 459
HincII	GTYRAC	1 cut(s)	496
HindII	GTYRAC	1 cut(s)	496
HinfI	GANTC	3 cut(s)	56, 614, 850
HpaII	CCGG	2 cut(s)	74, 689
HphI	GGTGA	5 cut(s)	80, 97, 115, 332, 599
Hpy166II	GTNNAC	3 cut(s)	340, 405, 496
Hpy188I	TCNGA	3 cut(s)	237, 484, 638
Hpy188III	TCNNGA	4 cut(s)	16, 53, 292, 425
Hpy8I	GTNNAC	3 cut(s)	340, 405, 496
Hpy99I	CGWCG	5 cut(s)	104, 170, 497, 500, 763
HpyAV	CCTTC	4 cut(s)	295, 669, 811, 827
HpyCH4III	ACNGT	5 cut(s)	69, 80, 109, 318, 421
HpyCH4IV	ACGT	6 cut(s)	24, 492, 623, 758, 774, 838
HpyCH4V	TGCA	2 cut(s)	251, 314
HpyF10VI	GCNNNNNNNGC	3 cut(s)	272, 458, 471
HpyF3I	CTNAG	3 cut(s)	286, 475, 635
HpySE526I	ACGT	6 cut(s)	24, 492, 623, 758, 774, 838
Hsp92I	GRCGYC	4 cut(s)	32, 450, 656, 774
HspAI	GCGC	2 cut(s)	32, 459
KasI	GGCGCC	1 cut(s)	31
KroI	GCCGGC	1 cut(s)	688
KroNI	GCCGGC	1 cut(s)	690
Ksp22I	TGATCA	1 cut(s)	487
Kzo9I	GATC	4 cut(s)	18, 487, 568, 808
LmnI	GCTCC	3 cut(s)	471, 485, 739
Lsp1109I	GCAGC	1 cut(s)	191
MaeI	CTAG	3 cut(s)	363, 468, 663
MaeII	ACGT	6 cut(s)	24, 492, 623, 758, 774, 838
MaeIII	GTNAC	7 cut(s)	25, 69, 103, 221, 518, 602, 839
MalI	GATC	4 cut(s)	20, 489, 570, 810
MboI	GATC	4 cut(s)	18, 487, 568, 808
MboII	GAAGA	7 cut(s)	112, 307, 408, 452, 554, 745, 758
MflI	RGATCY	2 cut(s)	18, 568
MhlI	GDGCHC	1 cut(s)	476
MluCI	AATT	6 cut(s)	152, 239, 560, 734, 749, 785
Mly113I	GGCGCC	1 cut(s)	32
MlyI	GAGTC	1 cut(s)	844
MmeI	TCCRAC	2 cut(s)	107, 810
MreI	CGCCGGCG	1 cut(s)	688
MroNI	GCCGGC	1 cut(s)	688
MseI	TTAA	2 cut(s)	245, 857
MspI	CCGG	2 cut(s)	74, 689
MvnI	CGCG	1 cut(s)	619
MwoI	GCNNNNNNNGC	3 cut(s)	272, 458, 471
NaeI	GCCGGC	1 cut(s)	690
NarI	GGCGCC	1 cut(s)	32
NdeII	GATC	4 cut(s)	18, 487, 568, 808
NgoMIV	GCCGGC	1 cut(s)	688
NlaIV	GGNNCC	5 cut(s)	33, 429, 481, 696, 709
NmeAIII	GCCGAG	3 cut(s)	381, 679, 790
NmuCI	GTSAC	3 cut(s)	103, 221, 602
PaeR7I	CTCGAG	2 cut(s)	514, 526
PcsI	WCGNNNNNNNCGW	3 cut(s)	99, 105, 342
PdiI	GCCGGC	1 cut(s)	690
PfeI	GAWTC	2 cut(s)	56, 614
PkrI	GCNGC	1 cut(s)	181
PleI	GAGTC	1 cut(s)	844
PluTI	GGCGCC	1 cut(s)	35
PpsI	GAGTC	1 cut(s)	844
Ppu21I	YACGTR	1 cut(s)	25
PshAI	GACNNNNGTC	1 cut(s)	228
Psp124BI	GAGCTC	1 cut(s)	476
PspN4I	GGNNCC	5 cut(s)	33, 429, 481, 696, 709
PspPI	GGNCC	1 cut(s)	76
PspXI	VCTCGAGB	2 cut(s)	514, 526
PsuI	RGATCY	2 cut(s)	18, 568
RsaI	GTAC	2 cut(s)	204, 406
RsaNI	GTAC	2 cut(s)	203, 405
Rsr2I	CGGWCCG	1 cut(s)	76
RsrII	CGGWCCG	1 cut(s)	76
SacI	GAGCTC	1 cut(s)	476
SalI	GTCGAC	1 cut(s)	494
SaqAI	TTAA	2 cut(s)	245, 857
SatI	GCNGC	1 cut(s)	180
Sau3AI	GATC	4 cut(s)	18, 487, 568, 808
Sau96I	GGNCC	1 cut(s)	76
SchI	GAGTC	1 cut(s)	844
SduI	GDGCHC	1 cut(s)	476
SfcI	CTRYAG	1 cut(s)	729
SfoI	GGCGCC	1 cut(s)	33
Sfr274I	CTCGAG	2 cut(s)	514, 526
SgrAI	CRCCGGYG	1 cut(s)	688
SgrDI	CGTCGACG	1 cut(s)	494
SinI	GGWCC	1 cut(s)	76
SlaI	CTCGAG	2 cut(s)	514, 526
SmlI	CTYRAG	2 cut(s)	514, 526
SmoI	CTYRAG	2 cut(s)	514, 526
SnaBI	TACGTA	1 cut(s)	25
Sse9I	AATT	6 cut(s)	152, 239, 560, 734, 749, 785
SsiI	CCGC	4 cut(s)	275, 619, 692, 703
SspDI	GGCGCC	1 cut(s)	31
SspMI	CTAG	3 cut(s)	363, 468, 663
SstI	GAGCTC	1 cut(s)	476
StyI	CCWWGG	1 cut(s)	467
TaaI	ACNGT	5 cut(s)	69, 80, 109, 318, 421
TaiI	ACGT	6 cut(s)	27, 495, 626, 761, 777, 841
TaqI	TCGA	6 cut(s)	345, 380, 495, 515, 527, 853
TaqII	GACCGA	1 cut(s)	232
TasI	AATT	6 cut(s)	152, 239, 560, 734, 749, 785
TatI	WGTACW	2 cut(s)	202, 404
TfiI	GAWTC	2 cut(s)	56, 614
Tru1I	TTAA	2 cut(s)	245, 857
Tru9I	TTAA	2 cut(s)	245, 857
TscAI	CASTG	2 cut(s)	72, 258
TseFI	GTSAC	3 cut(s)	103, 221, 602
TseI	GCWGC	1 cut(s)	179
Tsp45I	GTSAC	3 cut(s)	103, 221, 602
TspRI	CASTG	2 cut(s)	72, 258
VpaK11BI	GGWCC	1 cut(s)	76
XapI	RAATTY	4 cut(s)	239, 560, 749, 785
XhoI	CTCGAG	2 cut(s)	514, 526
XmaJI	CCTAGG	1 cut(s)	467
XmiI	GTMKAC	1 cut(s)	495
XspI	CTAG	3 cut(s)	363, 468, 663
ZraI	GACGTC	1 cut(s)	775

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.