Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0016240

Physical Location & Seq

Genomic Coordinates Forward (+)

9813440 .. 9814749

Gene Structure 1310 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g16970.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGATTTCCACAAGGGCAGAAGAAGCAGAAGAAAAGGAAGCATATGAGATAGCCGAAGACAACCTGCAGGATGCTGAGTCAAAGCAAAGTGATCATGATGATGATGAAGGAGTAGCTGATCATCATGAAGATGATAATTTGGGAGATTGGTTGAGCTTGAGCCTCAATAAAGATGATCTATCCTCAAAACCAGGCAGTAGTAGCAGCAGCAGCAATAAGGTTTTCTCATGCAACTTCTGCATGAGGAAGTTCTATAGCTCACAAGCCTTAGGAGGCCATCAGAATGCACACAAAAGAGAAAGAGGAGCTGCAAAGAGGTACCAATCTCATAGAATGATGATGACAACGATGATGGGGTATCCCTTCAATTCTGTAGCGGCTCGTTCACTTGGTGTTCAGCCTCATTCACTTGTGCAGAAGCAAACCAGAGATAGGTCTTCGATGATGGCTCGCTCCGGCGCCGTCGATGGTTTTAGCGCTGGTTTTGGAATGCCGTGGACACCATTCATGCTTGAAAATACCATGGATATGATTTGGCCTGGAAGTTTTCGAGTCGAACACAGATTGCCAAGCAGTACACATGATCATCATCAATCAGATCATGTACATAATAAACAGCTCGACTTAAATTTACGGCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009787 GO:0009788 GO:0009889 GO:0009966 GO:0009968 GO:0009987 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0023051 GO:0023057 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0044424 GO:0044464 GO:0046982 GO:0046983 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901135 GO:1901363 GO:1901419 GO:1901420 GO:1901564 GO:1901657 GO:1903506 GO:1905957 GO:1905958 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

214

Amino Acids

24.05

Weight (kDa)

5.87

Isoelectric Point (pI)

58.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016240)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g16970
malus_domestica	MD02G1180000.v1.1 MD15G1290700.v1.1
prunus_persica	Prupe.6G226200_v2.0.a1
pyrus_communis	pycom02g14590
rosa_chinensis	RchiOBHm_Chr2g0107071
rosa_laevigata	RLG00000017552
rosa_multiflora	Rmu_sc0004298.1_g000006
rosa_roxburghii	Rroxscaffold_2G00136640
rosa_rugosa	Rorug02G0140200
rosa_samantha	Rh2AG191000 Rh2BG202700 Rh2CG195900 Rh2DG198200
rosa_wichuraiana	Rw2G015070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	72
Acc65I	GGTACC	1 cut(s)	318
AccB1I	GGYRCC	2 cut(s)	318, 458
AciI	CCGC	1 cut(s)	377
AcsI	RAATTY	1 cut(s)	628
AcyI	GRCGYC	1 cut(s)	459
AdeI	CACNNNGTG	1 cut(s)	392
AfaI	GTAC	3 cut(s)	320, 577, 606
AfeI	AGCGCT	1 cut(s)	478
AfiI	CCNNNNNNNGG	1 cut(s)	432
AgsI	TTSAA	2 cut(s)	367, 515
AjnI	CCWGG	2 cut(s)	190, 538
AluBI	AGCT	5 cut(s)	116, 156, 258, 308, 619
AluI	AGCT	5 cut(s)	116, 156, 258, 308, 619
Aor51HI	AGCGCT	1 cut(s)	478
AoxI	GGCC	2 cut(s)	274, 536
ApeKI	GCWGC	4 cut(s)	204, 207, 210, 308
ApoI	RAATTY	1 cut(s)	628
Asp718I	GGTACC	1 cut(s)	318
AspLEI	GCGC	2 cut(s)	461, 479
AxyI	CCTNAGG	1 cut(s)	268
BanI	GGYRCC	2 cut(s)	318, 458
BbsI	GAAGAC	2 cut(s)	63, 429
BbvI	GCAGC	4 cut(s)	216, 219, 222, 295
BccI	CCATC	4 cut(s)	285, 346, 439, 461
BceAI	ACGGC	2 cut(s)	446, 478
BciT130I	CCWGG	2 cut(s)	192, 540
BciVI	GTATCC	1 cut(s)	369
BclI	TGATCA	3 cut(s)	91, 118, 583
BfmI	CTRYAG	3 cut(s)	65, 253, 372
BfoI	RGCGCY	2 cut(s)	462, 480
BfuAI	ACCTGC	1 cut(s)	72
BfuI	GTATCC	1 cut(s)	369
BisI	GCNGC	5 cut(s)	205, 208, 211, 309, 378
BlsI	GCNGC	5 cut(s)	206, 209, 212, 310, 379
Bme1390I	CCNGG	2 cut(s)	192, 540
BmiI	GGNNCC	2 cut(s)	320, 460
BmrFI	CCNGG	2 cut(s)	192, 540
BmsI	GCATC	1 cut(s)	61
BpiI	GAAGAC	2 cut(s)	63, 429
BpuEI	CTTGAG	1 cut(s)	178
BsaBI	GATNNNNATC	1 cut(s)	588
BsaHI	GRCGYC	1 cut(s)	459
BsaJI	CCNNGG	2 cut(s)	494, 522
Bsc4I	CCNNNNNNNGG	1 cut(s)	432
Bse21I	CCTNAGG	1 cut(s)	268
Bse8I	GATNNNNATC	1 cut(s)	588
BseBI	CCWGG	2 cut(s)	192, 540
BseDI	CCNNGG	2 cut(s)	494, 522
BseGI	GGATG	1 cut(s)	76
BseJI	GATNNNNATC	1 cut(s)	588
BseLI	CCNNNNNNNGG	1 cut(s)	432
BseMII	CTCAG	1 cut(s)	66
BseRI	GAGGAG	1 cut(s)	318
BseXI	GCAGC	4 cut(s)	216, 219, 222, 295
BsgI	GTGCAG	1 cut(s)	434
BshFI	GGCC	2 cut(s)	276, 538
BshNI	GGYRCC	2 cut(s)	318, 458
BsiSI	CCGG	1 cut(s)	456
BslI	CCNNNNNNNGG	1 cut(s)	432
BsmI	GAATGC	2 cut(s)	289, 495
BsnI	GGCC	2 cut(s)	276, 538
Bsp1407I	TGTACA	1 cut(s)	604
Bsp143I	GATC	5 cut(s)	91, 118, 175, 583, 598
Bsp19I	CCATGG	1 cut(s)	522
BspACI	CCGC	1 cut(s)	377
BspANI	GGCC	2 cut(s)	276, 538
BspCNI	CTCAG	1 cut(s)	67
BspHI	TCATGA	2 cut(s)	94, 124
BspLI	GGNNCC	2 cut(s)	320, 460
BspMAI	CTGCAG	1 cut(s)	69
BspMI	ACCTGC	1 cut(s)	72
BspT107I	GGYRCC	2 cut(s)	318, 458
BsrGI	TGTACA	1 cut(s)	604
BssECI	CCNNGG	2 cut(s)	494, 522
BssMI	GATC	5 cut(s)	91, 118, 175, 583, 598
BssNI	GRCGYC	1 cut(s)	459
BssT1I	CCWWGG	1 cut(s)	522
Bst2UI	CCWGG	2 cut(s)	192, 540
BstACI	GRCGYC	1 cut(s)	459
BstAPI	GCANNNNNTGC	1 cut(s)	237
BstAUI	TGTACA	1 cut(s)	604
BstC8I	GCNNGC	1 cut(s)	451
BstDEI	CTNAG	2 cut(s)	75, 268
BstDSI	CCRYGG	2 cut(s)	494, 522
BstF5I	GGATG	1 cut(s)	76
BstH2I	RGCGCY	2 cut(s)	462, 480
BstHHI	GCGC	2 cut(s)	461, 479
BstKTI	GATC	5 cut(s)	94, 121, 178, 586, 601
BstMBI	GATC	5 cut(s)	91, 118, 175, 583, 598
BstMWI	GCNNNNNNNGC	4 cut(s)	23, 201, 210, 237
BstNI	CCWGG	2 cut(s)	192, 540
BstSCI	CCNGG	2 cut(s)	190, 538
BstSFI	CTRYAG	3 cut(s)	65, 253, 372
BstV1I	GCAGC	4 cut(s)	216, 219, 222, 295
BstV2I	GAAGAC	2 cut(s)	63, 429
Bsu36I	CCTNAGG	1 cut(s)	268
BsuI	GTATCC	1 cut(s)	369
BsuRI	GGCC	2 cut(s)	276, 538
BtgI	CCRYGG	2 cut(s)	494, 522
BtsCI	GGATG	1 cut(s)	76
BveI	ACCTGC	1 cut(s)	72
Cac8I	GCNNGC	1 cut(s)	451
CciI	TCATGA	2 cut(s)	94, 124
CfoI	GCGC	2 cut(s)	461, 479
Csp6I	GTAC	3 cut(s)	319, 576, 605
CviAII	CATG	8 cut(s)	95, 125, 228, 241, 508, 523, 581, 602
CviQI	GTAC	3 cut(s)	319, 576, 605
DdeI	CTNAG	2 cut(s)	75, 268
DinI	GGCGCC	1 cut(s)	460
DpnI	GATC	5 cut(s)	93, 120, 177, 585, 600
DpnII	GATC	5 cut(s)	91, 118, 175, 583, 598
DraIII	CACNNNGTG	1 cut(s)	392
Eco130I	CCWWGG	1 cut(s)	522
Eco47III	AGCGCT	1 cut(s)	478
Eco81I	CCTNAGG	1 cut(s)	268
EcoRII	CCWGG	2 cut(s)	190, 538
EcoT14I	CCWWGG	1 cut(s)	522
EgeI	GGCGCC	1 cut(s)	460
EheI	GGCGCC	1 cut(s)	460
ErhI	CCWWGG	1 cut(s)	522
FaeI	CATG	8 cut(s)	98, 128, 231, 244, 511, 526, 584, 605
FatI	CATG	8 cut(s)	94, 124, 227, 240, 507, 522, 580, 601
FauNDI	CATATG	1 cut(s)	43
FbaI	TGATCA	3 cut(s)	91, 118, 583
Fnu4HI	GCNGC	5 cut(s)	205, 208, 211, 309, 378
FokI	GGATG	1 cut(s)	83
Fsp4HI	GCNGC	5 cut(s)	205, 208, 211, 309, 378
GlaI	GCGC	2 cut(s)	460, 478
GluI	GCNGC	5 cut(s)	205, 208, 211, 309, 378
HaeII	RGCGCY	2 cut(s)	462, 480
HaeIII	GGCC	2 cut(s)	276, 538
HapII	CCGG	1 cut(s)	456
HhaI	GCGC	2 cut(s)	461, 479
Hin1I	GRCGYC	1 cut(s)	459
Hin1II	CATG	8 cut(s)	98, 128, 231, 244, 511, 526, 584, 605
Hin6I	GCGC	2 cut(s)	459, 477
HinP1I	GCGC	2 cut(s)	459, 477
HinfI	GANTC	2 cut(s)	77, 552
HpaII	CCGG	1 cut(s)	456
Hpy166II	GTNNAC	3 cut(s)	386, 498, 578
Hpy188I	TCNGA	2 cut(s)	282, 598
Hpy188III	TCNNGA	2 cut(s)	95, 125
Hpy8I	GTNNAC	3 cut(s)	386, 498, 578
Hpy99I	CGWCG	1 cut(s)	467
HpyAV	CCTTC	2 cut(s)	101, 373
HpyCH4V	TGCA	6 cut(s)	67, 231, 240, 287, 311, 415
HpyF10VI	GCNNNNNNNGC	4 cut(s)	23, 201, 210, 237
HpyF3I	CTNAG	2 cut(s)	75, 268
Hsp92I	GRCGYC	1 cut(s)	459
Hsp92II	CATG	8 cut(s)	98, 128, 231, 244, 511, 526, 584, 605
HspAI	GCGC	2 cut(s)	459, 477
KasI	GGCGCC	1 cut(s)	458
KpnI	GGTACC	1 cut(s)	322
Ksp22I	TGATCA	3 cut(s)	91, 118, 583
Kzo9I	GATC	5 cut(s)	91, 118, 175, 583, 598
LmnI	GCTCC	2 cut(s)	305, 458
LpnPI	CCDG	9 cut(s)	53, 77, 177, 204, 439, 465, 469, 525, 552
Lsp1109I	GCAGC	4 cut(s)	216, 219, 222, 295
LweI	GCATC	1 cut(s)	61
MalI	GATC	5 cut(s)	93, 120, 177, 585, 600
MboI	GATC	5 cut(s)	91, 118, 175, 583, 598
MboII	GAAGA	5 cut(s)	32, 41, 68, 140, 429
MluCI	AATT	3 cut(s)	136, 367, 628
Mly113I	GGCGCC	1 cut(s)	459
MlyI	GAGTC	2 cut(s)	86, 561
MnlI	CCTC	7 cut(s)	173, 193, 237, 266, 296, 309, 411
MseI	TTAA	1 cut(s)	626
MslI	CAYNNNNRTG	4 cut(s)	99, 129, 282, 527
MspI	CCGG	1 cut(s)	456
MspR9I	CCNGG	2 cut(s)	192, 540
Mva1269I	GAATGC	2 cut(s)	289, 495
MvaI	CCWGG	2 cut(s)	192, 540
MwoI	GCNNNNNNNGC	4 cut(s)	23, 201, 210, 237
NarI	GGCGCC	1 cut(s)	459
NcoI	CCATGG	1 cut(s)	522
NdeI	CATATG	1 cut(s)	43
NdeII	GATC	5 cut(s)	91, 118, 175, 583, 598
NlaIII	CATG	8 cut(s)	98, 128, 231, 244, 511, 526, 584, 605
NlaIV	GGNNCC	2 cut(s)	320, 460
PagI	TCATGA	2 cut(s)	94, 124
PctI	GAATGC	2 cut(s)	289, 495
PkrI	GCNGC	5 cut(s)	206, 209, 212, 310, 379
PleI	GAGTC	2 cut(s)	85, 560
PluTI	GGCGCC	1 cut(s)	462
PpsI	GAGTC	2 cut(s)	85, 560
Psp6I	CCWGG	2 cut(s)	190, 538
PspGI	CCWGG	2 cut(s)	190, 538
PspN4I	GGNNCC	2 cut(s)	320, 460
PstI	CTGCAG	1 cut(s)	69
RsaI	GTAC	3 cut(s)	320, 577, 606
RsaNI	GTAC	3 cut(s)	319, 576, 605
RseI	CAYNNNNRTG	4 cut(s)	99, 129, 282, 527
SaqAI	TTAA	1 cut(s)	626
SatI	GCNGC	5 cut(s)	205, 208, 211, 309, 378
Sau3AI	GATC	5 cut(s)	91, 118, 175, 583, 598
SbfI	CCTGCAGG	1 cut(s)	69
SchI	GAGTC	2 cut(s)	86, 561
ScrFI	CCNGG	2 cut(s)	192, 540
SdaI	CCTGCAGG	1 cut(s)	69
SetI	ASST	9 cut(s)	66, 118, 158, 222, 260, 310, 320, 437, 621
SfaNI	GCATC	1 cut(s)	61
SfcI	CTRYAG	3 cut(s)	65, 253, 372
SfoI	GGCGCC	1 cut(s)	460
SmiMI	CAYNNNNRTG	4 cut(s)	99, 129, 282, 527
SmlI	CTYRAG	1 cut(s)	157
SmoI	CTYRAG	1 cut(s)	157
Sse8387I	CCTGCAGG	1 cut(s)	69
Sse9I	AATT	3 cut(s)	136, 367, 628
SsiI	CCGC	1 cut(s)	377
SspDI	GGCGCC	1 cut(s)	458
StyD4I	CCNGG	2 cut(s)	190, 538
StyI	CCWWGG	1 cut(s)	522
TaqI	TCGA	5 cut(s)	440, 465, 550, 555, 621
TasI	AATT	3 cut(s)	136, 367, 628
TatI	WGTACW	2 cut(s)	575, 604
TauI	GCSGC	1 cut(s)	380
Tru1I	TTAA	1 cut(s)	626
Tru9I	TTAA	1 cut(s)	626
TseI	GCWGC	4 cut(s)	204, 207, 210, 308
TspDTI	ATGAA	3 cut(s)	120, 141, 496
XapI	RAATTY	1 cut(s)	628

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.