Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0016240

Physical Location & Seq

Genomic Coordinates Reverse (-)

74321665 .. 74322264

Gene Structure 600 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00136640.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGATTCCCACAAGGGCAGAACAAGAAAAAGAAAAAGCATATGAGATTGCAGAAAACAACCAGGATTCTGAGTCAAAGCAAAGTGATCATGAGGATGATAATTTGGGAGATTGGTTGAGCTTAAGCCTCAATAAAAATGATCCATCATCAAAACCAGGCAGTAGTAGCAGCAACAATAAGGTTTTCTCATGCAACTTCTGCATGAGGAAGTTTTATAGCTCACAAGCCTTGGGAGGCCATCAGAATGCACACAAAAGAGAAAGGGGAGCTGCAAAGAGGTACCAATCTCATAGGATGATGATGACAACGATGATGGGGTTTCCCTTCAATTCTGTAGCGGCTCGTTCACTTGGTGTTCAGCCTCATTCACTTGTGCAGAAGGAAACCAGACAAGGGTCTTCGGCGGTGGCTCGCTCCGGCGGCGATGGTTTGAGCACTGGTTTTGGAATGCCATGGATGCCATTCATGCTTGAAGATGCTATGGATATGATTTGGCCCGGAAGTTTCCGAGTGGAACACAGGTTGCCAAGTAGTACAGATGATCATCATCAATCAGATCATGTACATAATAAACAGCTCGACTTAAATTTACGGCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009787 GO:0009788 GO:0009889 GO:0009966 GO:0009968 GO:0009987 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0023051 GO:0023057 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0044424 GO:0044464 GO:0046982 GO:0046983 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901135 GO:1901363 GO:1901419 GO:1901420 GO:1901564 GO:1901657 GO:1903506 GO:1905957 GO:1905958 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

199

Amino Acids

22.39

Weight (kDa)

6.79

Isoelectric Point (pI)

64.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016240)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g16970
malus_domestica	MD02G1180000.v1.1 MD15G1290700.v1.1
prunus_persica	Prupe.6G226200_v2.0.a1
pyrus_communis	pycom02g14590
rosa_chinensis	RchiOBHm_Chr2g0107071
rosa_laevigata	RLG00000017552
rosa_multiflora	Rmu_sc0004298.1_g000006
rosa_roxburghii	Rroxscaffold_2G00136640
rosa_rugosa	Rorug02G0140200
rosa_samantha	Rh2AG191000 Rh2BG202700 Rh2CG195900 Rh2DG198200
rosa_wichuraiana	Rw2G015070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	279
AccB1I	GGYRCC	1 cut(s)	279
AciI	CCGC	3 cut(s)	338, 404, 420
AclWI	GGATC	1 cut(s)	134
AcsI	RAATTY	1 cut(s)	586
AdeI	CACNNNGTG	1 cut(s)	353
AfaI	GTAC	3 cut(s)	281, 535, 564
AfiI	CCNNNNNNNGG	1 cut(s)	393
AflII	CTTAAG	1 cut(s)	121
AgsI	TTSAA	2 cut(s)	328, 473
AjnI	CCWGG	2 cut(s)	60, 154
AluBI	AGCT	4 cut(s)	120, 219, 269, 577
AluI	AGCT	4 cut(s)	120, 219, 269, 577
Alw21I	GWGCWC	1 cut(s)	437
AlwI	GGATC	1 cut(s)	134
AoxI	GGCC	2 cut(s)	235, 494
ApeKI	GCWGC	2 cut(s)	168, 269
ApoI	RAATTY	1 cut(s)	586
Asp718I	GGTACC	1 cut(s)	279
AspS9I	GGNCC	1 cut(s)	495
AsuC2I	CCSGG	1 cut(s)	498
BanI	GGYRCC	1 cut(s)	279
BbsI	GAAGAC	1 cut(s)	390
Bbv12I	GWGCWC	1 cut(s)	437
BbvI	GCAGC	2 cut(s)	180, 256
BccI	CCATC	4 cut(s)	151, 246, 307, 419
BciT130I	CCWGG	2 cut(s)	62, 156
BclI	TGATCA	2 cut(s)	85, 541
BcnI	CCSGG	1 cut(s)	498
BfmI	CTRYAG	1 cut(s)	333
BfrI	CTTAAG	1 cut(s)	121
BisI	GCNGC	4 cut(s)	169, 270, 339, 421
BlsI	GCNGC	4 cut(s)	170, 271, 340, 422
Bme1390I	CCNGG	3 cut(s)	62, 156, 498
BmgT120I	GGNCC	1 cut(s)	495
BmiI	GGNNCC	1 cut(s)	281
BmrFI	CCNGG	3 cut(s)	62, 156, 498
BmsI	GCATC	2 cut(s)	447, 466
BoxI	GACNNNNGTC	1 cut(s)	394
BpiI	GAAGAC	1 cut(s)	390
BpuMI	CCSGG	1 cut(s)	498
BsaBI	GATNNNNATC	2 cut(s)	543, 546
BsaJI	CCNNGG	2 cut(s)	228, 452
Bsc4I	CCNNNNNNNGG	1 cut(s)	393
Bse1I	ACTGG	1 cut(s)	442
Bse8I	GATNNNNATC	2 cut(s)	543, 546
BseBI	CCWGG	2 cut(s)	62, 156
BseDI	CCNNGG	2 cut(s)	228, 452
BseGI	GGATG	3 cut(s)	100, 300, 462
BseJI	GATNNNNATC	2 cut(s)	543, 546
BseLI	CCNNNNNNNGG	1 cut(s)	393
BseMII	CTCAG	1 cut(s)	60
BseNI	ACTGG	1 cut(s)	442
BseXI	GCAGC	2 cut(s)	180, 256
BsgI	GTGCAG	1 cut(s)	395
BshFI	GGCC	2 cut(s)	237, 496
BshNI	GGYRCC	1 cut(s)	279
BsiHKAI	GWGCWC	1 cut(s)	437
BsiSI	CCGG	2 cut(s)	417, 498
BslI	CCNNNNNNNGG	1 cut(s)	393
BsmI	GAATGC	2 cut(s)	250, 453
BsnI	GGCC	2 cut(s)	237, 496
Bsp1286I	GDGCHC	1 cut(s)	437
Bsp1407I	TGTACA	1 cut(s)	562
Bsp143I	GATC	4 cut(s)	85, 139, 541, 556
Bsp19I	CCATGG	1 cut(s)	452
BspACI	CCGC	3 cut(s)	338, 404, 420
BspANI	GGCC	2 cut(s)	237, 496
BspCNI	CTCAG	1 cut(s)	61
BspHI	TCATGA	1 cut(s)	88
BspLI	GGNNCC	1 cut(s)	281
BspPI	GGATC	1 cut(s)	134
BspT107I	GGYRCC	1 cut(s)	279
BspTI	CTTAAG	1 cut(s)	121
BsrGI	TGTACA	1 cut(s)	562
BsrI	ACTGG	1 cut(s)	442
BssECI	CCNNGG	2 cut(s)	228, 452
BssMI	GATC	4 cut(s)	85, 139, 541, 556
BssT1I	CCWWGG	2 cut(s)	228, 452
Bst2UI	CCWGG	2 cut(s)	62, 156
BstAFI	CTTAAG	1 cut(s)	121
BstAPI	GCANNNNNTGC	1 cut(s)	198
BstAUI	TGTACA	1 cut(s)	562
BstC8I	GCNNGC	1 cut(s)	412
BstDEI	CTNAG	1 cut(s)	69
BstDSI	CCRYGG	1 cut(s)	452
BstF5I	GGATG	3 cut(s)	100, 300, 462
BstKTI	GATC	4 cut(s)	88, 142, 544, 559
BstMBI	GATC	4 cut(s)	85, 139, 541, 556
BstMWI	GCNNNNNNNGC	5 cut(s)	165, 198, 420, 457, 466
BstNI	CCWGG	2 cut(s)	62, 156
BstPAI	GACNNNNGTC	1 cut(s)	394
BstSCI	CCNGG	3 cut(s)	60, 154, 496
BstSFI	CTRYAG	1 cut(s)	333
BstV1I	GCAGC	2 cut(s)	180, 256
BstV2I	GAAGAC	1 cut(s)	390
BsuRI	GGCC	2 cut(s)	237, 496
BtgI	CCRYGG	1 cut(s)	452
BtgZI	GCGATG	1 cut(s)	438
BtsCI	GGATG	3 cut(s)	100, 300, 462
BtsIMutI	CAGTG	1 cut(s)	435
Cac8I	GCNNGC	1 cut(s)	412
CciI	TCATGA	1 cut(s)	88
Cfr13I	GGNCC	1 cut(s)	495
Csp6I	GTAC	3 cut(s)	280, 534, 563
CviAII	CATG	6 cut(s)	89, 189, 202, 453, 466, 560
CviQI	GTAC	3 cut(s)	280, 534, 563
DdeI	CTNAG	1 cut(s)	69
DpnI	GATC	4 cut(s)	87, 141, 543, 558
DpnII	GATC	4 cut(s)	85, 139, 541, 556
DraIII	CACNNNGTG	1 cut(s)	353
Eco130I	CCWWGG	2 cut(s)	228, 452
EcoRII	CCWGG	2 cut(s)	60, 154
EcoT14I	CCWWGG	2 cut(s)	228, 452
ErhI	CCWWGG	2 cut(s)	228, 452
FaeI	CATG	6 cut(s)	92, 192, 205, 456, 469, 563
FatI	CATG	6 cut(s)	88, 188, 201, 452, 465, 559
FauNDI	CATATG	1 cut(s)	40
FbaI	TGATCA	2 cut(s)	85, 541
Fnu4HI	GCNGC	4 cut(s)	169, 270, 339, 421
FokI	GGATG	3 cut(s)	107, 307, 469
Fsp4HI	GCNGC	4 cut(s)	169, 270, 339, 421
GluI	GCNGC	4 cut(s)	169, 270, 339, 421
HaeIII	GGCC	2 cut(s)	237, 496
HapII	CCGG	2 cut(s)	417, 498
Hin1II	CATG	6 cut(s)	92, 192, 205, 456, 469, 563
HinfI	GANTC	3 cut(s)	4, 65, 71
HpaII	CCGG	2 cut(s)	417, 498
Hpy166II	GTNNAC	1 cut(s)	347
Hpy188I	TCNGA	4 cut(s)	70, 243, 509, 556
Hpy188III	TCNNGA	1 cut(s)	89
Hpy8I	GTNNAC	1 cut(s)	347
HpyAV	CCTTC	2 cut(s)	334, 373
HpyCH4V	TGCA	6 cut(s)	50, 192, 201, 248, 272, 376
HpyF10VI	GCNNNNNNNGC	5 cut(s)	165, 198, 420, 457, 466
HpyF3I	CTNAG	1 cut(s)	69
Hsp92II	CATG	6 cut(s)	92, 192, 205, 456, 469, 563
KpnI	GGTACC	1 cut(s)	283
Ksp22I	TGATCA	2 cut(s)	85, 541
Kzo9I	GATC	4 cut(s)	85, 139, 541, 556
LmnI	GCTCC	2 cut(s)	266, 419
LpnPI	CCDG	9 cut(s)	47, 74, 141, 168, 400, 423, 430, 505, 511
Lsp1109I	GCAGC	2 cut(s)	180, 256
LweI	GCATC	2 cut(s)	447, 466
MalI	GATC	4 cut(s)	87, 141, 543, 558
MboI	GATC	4 cut(s)	85, 139, 541, 556
MboII	GAAGA	2 cut(s)	390, 485
MhlI	GDGCHC	1 cut(s)	437
MluCI	AATT	3 cut(s)	100, 328, 586
MlyI	GAGTC	1 cut(s)	80
MnlI	CCTC	6 cut(s)	85, 137, 198, 227, 270, 372
MseI	TTAA	2 cut(s)	122, 584
MslI	CAYNNNNRTG	2 cut(s)	93, 243
MspCI	CTTAAG	1 cut(s)	121
MspI	CCGG	2 cut(s)	417, 498
MspR9I	CCNGG	3 cut(s)	62, 156, 498
Mva1269I	GAATGC	2 cut(s)	250, 453
MvaI	CCWGG	2 cut(s)	62, 156
MwoI	GCNNNNNNNGC	5 cut(s)	165, 198, 420, 457, 466
NciI	CCSGG	1 cut(s)	498
NcoI	CCATGG	1 cut(s)	452
NdeI	CATATG	1 cut(s)	40
NdeII	GATC	4 cut(s)	85, 139, 541, 556
NlaIII	CATG	6 cut(s)	92, 192, 205, 456, 469, 563
NlaIV	GGNNCC	1 cut(s)	281
PagI	TCATGA	1 cut(s)	88
PctI	GAATGC	2 cut(s)	250, 453
PfeI	GAWTC	2 cut(s)	4, 65
PkrI	GCNGC	4 cut(s)	170, 271, 340, 422
PleI	GAGTC	1 cut(s)	79
PpsI	GAGTC	1 cut(s)	79
PshAI	GACNNNNGTC	1 cut(s)	394
Psp6I	CCWGG	2 cut(s)	60, 154
PspGI	CCWGG	2 cut(s)	60, 154
PspN4I	GGNNCC	1 cut(s)	281
PspPI	GGNCC	1 cut(s)	495
RsaI	GTAC	3 cut(s)	281, 535, 564
RsaNI	GTAC	3 cut(s)	280, 534, 563
RseI	CAYNNNNRTG	2 cut(s)	93, 243
SaqAI	TTAA	2 cut(s)	122, 584
SatI	GCNGC	4 cut(s)	169, 270, 339, 421
Sau3AI	GATC	4 cut(s)	85, 139, 541, 556
Sau96I	GGNCC	1 cut(s)	495
SchI	GAGTC	1 cut(s)	80
ScrFI	CCNGG	3 cut(s)	62, 156, 498
SduI	GDGCHC	1 cut(s)	437
SetI	ASST	7 cut(s)	122, 183, 221, 271, 281, 524, 579
SfaNI	GCATC	2 cut(s)	447, 466
SfcI	CTRYAG	1 cut(s)	333
SmiMI	CAYNNNNRTG	2 cut(s)	93, 243
SmlI	CTYRAG	1 cut(s)	121
SmoI	CTYRAG	1 cut(s)	121
Sse9I	AATT	3 cut(s)	100, 328, 586
SsiI	CCGC	3 cut(s)	338, 404, 420
StyD4I	CCNGG	3 cut(s)	60, 154, 496
StyI	CCWWGG	2 cut(s)	228, 452
TaqI	TCGA	1 cut(s)	579
TasI	AATT	3 cut(s)	100, 328, 586
TatI	WGTACW	2 cut(s)	533, 562
TauI	GCSGC	2 cut(s)	341, 423
TfiI	GAWTC	2 cut(s)	4, 65
Tru1I	TTAA	2 cut(s)	122, 584
Tru9I	TTAA	2 cut(s)	122, 584
TscAI	CASTG	1 cut(s)	442
TseI	GCWGC	2 cut(s)	168, 269
TspDTI	ATGAA	1 cut(s)	454
TspRI	CASTG	1 cut(s)	442
Vha464I	CTTAAG	1 cut(s)	121
XapI	RAATTY	1 cut(s)	586

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.