Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0016240

Physical Location & Seq

Genomic Coordinates Forward (+)

18903933 .. 18905842

Gene Structure 1910 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG191000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGATTCCCACAGGGGCAGAAGAAGAAGAAGGAAAAAAAGCATATGAGATTGCAGAAAACAACCAGGATTCTGAGTCAAAGCAAAGTGATCATGATGATGATGAAGGAGTAGCTGATCATCATGAGGATGATAATTTGGGAGATTGGTTGAGCTTAAGCCTCAATAAAAATGATCCATCATCAAAACCAGGCAGTAGTAGCAGCAACAATAAGGTTTTCTCATGCAACTTCTGCATGAGGAAGTTTTATAGCTCACAAGCCTTGGGAGGCCATCAGAATGCACACAAAAGAGAAAGAGGAGCTGCAAAGAGGTACCAATCTCATAGGATGATGATGACAACGATGATGGGGTTTCCCTTCAATTCTGTAGCGGCTCGTTCACTTGGTGTTCAGCCTCATTCACTTGTGCGGAAGGAAACCAGACAAGGGTCTTCGACGGTGGCTCGCTCAGGCGGCGATGGTTTGAGCACTGGTTTTGGAATGCCATGGATGCCATTCATGCTTGAAGATGCTAGGGATATGATTTGGCACGGAAGTTTCCGAGTGGAACACAGATTGCCAAGTAGTACAGATGATCATCATCAATCAGATCATGTACATAATAAACAGCTCGACTTAAATTTACGGCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009787 GO:0009788 GO:0009889 GO:0009966 GO:0009968 GO:0009987 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0023051 GO:0023057 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0044424 GO:0044464 GO:0046982 GO:0046983 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901135 GO:1901363 GO:1901419 GO:1901420 GO:1901564 GO:1901657 GO:1903506 GO:1905957 GO:1905958 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

210

Amino Acids

23.56

Weight (kDa)

6.09

Isoelectric Point (pI)

63.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016240)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g16970
malus_domestica	MD02G1180000.v1.1 MD15G1290700.v1.1
prunus_persica	Prupe.6G226200_v2.0.a1
pyrus_communis	pycom02g14590
rosa_chinensis	RchiOBHm_Chr2g0107071
rosa_laevigata	RLG00000017552
rosa_multiflora	Rmu_sc0004298.1_g000006
rosa_roxburghii	Rroxscaffold_2G00136640
rosa_rugosa	Rorug02G0140200
rosa_samantha	Rh2AG191000 Rh2BG202700 Rh2CG195900 Rh2DG198200
rosa_wichuraiana	Rw2G015070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	312
AccB1I	GGYRCC	1 cut(s)	312
AciI	CCGC	3 cut(s)	371, 409, 453
AclWI	GGATC	1 cut(s)	167
AcsI	RAATTY	1 cut(s)	619
AdeI	CACNNNGTG	1 cut(s)	386
AfaI	GTAC	3 cut(s)	314, 568, 597
AfiI	CCNNNNNNNGG	1 cut(s)	426
AflII	CTTAAG	1 cut(s)	154
AgsI	TTSAA	2 cut(s)	361, 506
AjnI	CCWGG	2 cut(s)	63, 187
AluBI	AGCT	5 cut(s)	113, 153, 252, 302, 610
AluI	AGCT	5 cut(s)	113, 153, 252, 302, 610
Alw21I	GWGCWC	1 cut(s)	470
AlwI	GGATC	1 cut(s)	167
AoxI	GGCC	1 cut(s)	268
ApeKI	GCWGC	2 cut(s)	201, 302
ApoI	RAATTY	1 cut(s)	619
Asp718I	GGTACC	1 cut(s)	312
BanI	GGYRCC	1 cut(s)	312
BbsI	GAAGAC	1 cut(s)	423
Bbv12I	GWGCWC	1 cut(s)	470
BbvI	GCAGC	2 cut(s)	213, 289
BccI	CCATC	4 cut(s)	184, 279, 340, 452
BciT130I	CCWGG	2 cut(s)	65, 189
BclI	TGATCA	3 cut(s)	88, 115, 574
BfaI	CTAG	1 cut(s)	513
BfmI	CTRYAG	1 cut(s)	366
BfrI	CTTAAG	1 cut(s)	154
BisI	GCNGC	4 cut(s)	202, 303, 372, 454
BlsI	GCNGC	4 cut(s)	203, 304, 373, 455
Bme1390I	CCNGG	2 cut(s)	65, 189
BmiI	GGNNCC	1 cut(s)	314
BmrFI	CCNGG	2 cut(s)	65, 189
BmsI	GCATC	2 cut(s)	480, 499
BoxI	GACNNNNGTC	1 cut(s)	427
BpiI	GAAGAC	1 cut(s)	423
Bpu10I	CCTNAGC	1 cut(s)	448
BsaBI	GATNNNNATC	2 cut(s)	576, 579
BsaJI	CCNNGG	2 cut(s)	261, 485
Bsc4I	CCNNNNNNNGG	1 cut(s)	426
Bse1I	ACTGG	1 cut(s)	475
Bse8I	GATNNNNATC	2 cut(s)	576, 579
BseBI	CCWGG	2 cut(s)	65, 189
BseDI	CCNNGG	2 cut(s)	261, 485
BseGI	GGATG	3 cut(s)	133, 333, 495
BseJI	GATNNNNATC	2 cut(s)	576, 579
BseLI	CCNNNNNNNGG	1 cut(s)	426
BseMII	CTCAG	2 cut(s)	63, 462
BseNI	ACTGG	1 cut(s)	475
BseRI	GAGGAG	1 cut(s)	312
BseXI	GCAGC	2 cut(s)	213, 289
BshFI	GGCC	1 cut(s)	270
BshNI	GGYRCC	1 cut(s)	312
BsiHKAI	GWGCWC	1 cut(s)	470
BslI	CCNNNNNNNGG	1 cut(s)	426
BsmI	GAATGC	2 cut(s)	283, 486
BsnI	GGCC	1 cut(s)	270
Bsp1286I	GDGCHC	1 cut(s)	470
Bsp1407I	TGTACA	1 cut(s)	595
Bsp143I	GATC	5 cut(s)	88, 115, 172, 574, 589
Bsp19I	CCATGG	1 cut(s)	485
BspACI	CCGC	3 cut(s)	371, 409, 453
BspANI	GGCC	1 cut(s)	270
BspCNI	CTCAG	2 cut(s)	64, 461
BspHI	TCATGA	2 cut(s)	91, 121
BspLI	GGNNCC	1 cut(s)	314
BspPI	GGATC	1 cut(s)	167
BspT107I	GGYRCC	1 cut(s)	312
BspTI	CTTAAG	1 cut(s)	154
BsrGI	TGTACA	1 cut(s)	595
BsrI	ACTGG	1 cut(s)	475
BssECI	CCNNGG	2 cut(s)	261, 485
BssMI	GATC	5 cut(s)	88, 115, 172, 574, 589
BssT1I	CCWWGG	2 cut(s)	261, 485
Bst2UI	CCWGG	2 cut(s)	65, 189
Bst4CI	ACNGT	1 cut(s)	439
BstAFI	CTTAAG	1 cut(s)	154
BstAPI	GCANNNNNTGC	1 cut(s)	231
BstAUI	TGTACA	1 cut(s)	595
BstC8I	GCNNGC	1 cut(s)	445
BstDEI	CTNAG	2 cut(s)	72, 448
BstDSI	CCRYGG	1 cut(s)	485
BstF5I	GGATG	3 cut(s)	133, 333, 495
BstKTI	GATC	5 cut(s)	91, 118, 175, 577, 592
BstMBI	GATC	5 cut(s)	88, 115, 172, 574, 589
BstMWI	GCNNNNNNNGC	5 cut(s)	198, 231, 453, 490, 499
BstNI	CCWGG	2 cut(s)	65, 189
BstPAI	GACNNNNGTC	1 cut(s)	427
BstSCI	CCNGG	2 cut(s)	63, 187
BstSFI	CTRYAG	1 cut(s)	366
BstV1I	GCAGC	2 cut(s)	213, 289
BstV2I	GAAGAC	1 cut(s)	423
BsuRI	GGCC	1 cut(s)	270
BtgI	CCRYGG	1 cut(s)	485
BtgZI	GCGATG	1 cut(s)	471
BtsCI	GGATG	3 cut(s)	133, 333, 495
BtsIMutI	CAGTG	1 cut(s)	468
Cac8I	GCNNGC	1 cut(s)	445
CciI	TCATGA	2 cut(s)	91, 121
Csp6I	GTAC	3 cut(s)	313, 567, 596
CviAII	CATG	7 cut(s)	92, 122, 222, 235, 486, 499, 593
CviQI	GTAC	3 cut(s)	313, 567, 596
DdeI	CTNAG	2 cut(s)	72, 448
DpnI	GATC	5 cut(s)	90, 117, 174, 576, 591
DpnII	GATC	5 cut(s)	88, 115, 172, 574, 589
DraIII	CACNNNGTG	1 cut(s)	386
Eco130I	CCWWGG	2 cut(s)	261, 485
EcoRII	CCWGG	2 cut(s)	63, 187
EcoT14I	CCWWGG	2 cut(s)	261, 485
ErhI	CCWWGG	2 cut(s)	261, 485
FaeI	CATG	7 cut(s)	95, 125, 225, 238, 489, 502, 596
FatI	CATG	7 cut(s)	91, 121, 221, 234, 485, 498, 592
FauNDI	CATATG	1 cut(s)	43
FbaI	TGATCA	3 cut(s)	88, 115, 574
Fnu4HI	GCNGC	4 cut(s)	202, 303, 372, 454
FokI	GGATG	3 cut(s)	140, 340, 502
Fsp4HI	GCNGC	4 cut(s)	202, 303, 372, 454
FspBI	CTAG	1 cut(s)	513
GluI	GCNGC	4 cut(s)	202, 303, 372, 454
HaeIII	GGCC	1 cut(s)	270
Hin1II	CATG	7 cut(s)	95, 125, 225, 238, 489, 502, 596
HinfI	GANTC	3 cut(s)	4, 68, 74
Hpy166II	GTNNAC	1 cut(s)	380
Hpy188I	TCNGA	4 cut(s)	73, 276, 542, 589
Hpy188III	TCNNGA	2 cut(s)	92, 122
Hpy8I	GTNNAC	1 cut(s)	380
Hpy99I	CGWCG	1 cut(s)	439
HpyAV	CCTTC	4 cut(s)	23, 98, 367, 406
HpyCH4III	ACNGT	1 cut(s)	439
HpyCH4V	TGCA	5 cut(s)	53, 225, 234, 281, 305
HpyF10VI	GCNNNNNNNGC	5 cut(s)	198, 231, 453, 490, 499
HpyF3I	CTNAG	2 cut(s)	72, 448
Hsp92II	CATG	7 cut(s)	95, 125, 225, 238, 489, 502, 596
KpnI	GGTACC	1 cut(s)	316
Ksp22I	TGATCA	3 cut(s)	88, 115, 574
Kzo9I	GATC	5 cut(s)	88, 115, 172, 574, 589
LmnI	GCTCC	1 cut(s)	299
LpnPI	CCDG	7 cut(s)	50, 77, 174, 201, 433, 435, 456
Lsp1109I	GCAGC	2 cut(s)	213, 289
LweI	GCATC	2 cut(s)	480, 499
MaeI	CTAG	1 cut(s)	513
MalI	GATC	5 cut(s)	90, 117, 174, 576, 591
MboI	GATC	5 cut(s)	88, 115, 172, 574, 589
MboII	GAAGA	5 cut(s)	32, 35, 38, 423, 518
MhlI	GDGCHC	1 cut(s)	470
MluCI	AATT	3 cut(s)	133, 361, 619
MlyI	GAGTC	1 cut(s)	83
MnlI	CCTC	7 cut(s)	118, 170, 231, 260, 290, 303, 405
MseI	TTAA	2 cut(s)	155, 617
MslI	CAYNNNNRTG	3 cut(s)	96, 126, 276
MspCI	CTTAAG	1 cut(s)	154
MspR9I	CCNGG	2 cut(s)	65, 189
Mva1269I	GAATGC	2 cut(s)	283, 486
MvaI	CCWGG	2 cut(s)	65, 189
MwoI	GCNNNNNNNGC	5 cut(s)	198, 231, 453, 490, 499
NcoI	CCATGG	1 cut(s)	485
NdeI	CATATG	1 cut(s)	43
NdeII	GATC	5 cut(s)	88, 115, 172, 574, 589
NlaIII	CATG	7 cut(s)	95, 125, 225, 238, 489, 502, 596
NlaIV	GGNNCC	1 cut(s)	314
PagI	TCATGA	2 cut(s)	91, 121
PctI	GAATGC	2 cut(s)	283, 486
PfeI	GAWTC	2 cut(s)	4, 68
PkrI	GCNGC	4 cut(s)	203, 304, 373, 455
PleI	GAGTC	1 cut(s)	82
PpsI	GAGTC	1 cut(s)	82
PshAI	GACNNNNGTC	1 cut(s)	427
Psp6I	CCWGG	2 cut(s)	63, 187
PspGI	CCWGG	2 cut(s)	63, 187
PspN4I	GGNNCC	1 cut(s)	314
RsaI	GTAC	3 cut(s)	314, 568, 597
RsaNI	GTAC	3 cut(s)	313, 567, 596
RseI	CAYNNNNRTG	3 cut(s)	96, 126, 276
SaqAI	TTAA	2 cut(s)	155, 617
SatI	GCNGC	4 cut(s)	202, 303, 372, 454
Sau3AI	GATC	5 cut(s)	88, 115, 172, 574, 589
SchI	GAGTC	1 cut(s)	83
ScrFI	CCNGG	2 cut(s)	65, 189
SduI	GDGCHC	1 cut(s)	470
SetI	ASST	7 cut(s)	115, 155, 216, 254, 304, 314, 612
SfaNI	GCATC	2 cut(s)	480, 499
SfcI	CTRYAG	1 cut(s)	366
SmiMI	CAYNNNNRTG	3 cut(s)	96, 126, 276
SmlI	CTYRAG	1 cut(s)	154
SmoI	CTYRAG	1 cut(s)	154
Sse9I	AATT	3 cut(s)	133, 361, 619
SsiI	CCGC	3 cut(s)	371, 409, 453
SspMI	CTAG	1 cut(s)	513
StyD4I	CCNGG	2 cut(s)	63, 187
StyI	CCWWGG	2 cut(s)	261, 485
TaaI	ACNGT	1 cut(s)	439
TaqI	TCGA	2 cut(s)	434, 612
TasI	AATT	3 cut(s)	133, 361, 619
TatI	WGTACW	2 cut(s)	566, 595
TauI	GCSGC	2 cut(s)	374, 456
TfiI	GAWTC	2 cut(s)	4, 68
Tru1I	TTAA	2 cut(s)	155, 617
Tru9I	TTAA	2 cut(s)	155, 617
TscAI	CASTG	1 cut(s)	475
TseI	GCWGC	2 cut(s)	201, 302
TspDTI	ATGAA	2 cut(s)	117, 487
TspGWI	ACGGA	1 cut(s)	546
TspRI	CASTG	1 cut(s)	475
Vha464I	CTTAAG	1 cut(s)	154
XapI	RAATTY	1 cut(s)	619
XspI	CTAG	1 cut(s)	513

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.