Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0016240

Physical Location & Seq

Genomic Coordinates Reverse (-)

23040249 .. 23041368

Gene Structure 1120 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G226200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGATTTCCAAAAGGGAACAAGAAGAAGCAAATGAGATGGTGGAAAACAACCAAGATAGTGATAATGAGGAAGATGATAAGTTGGGAGATTGGTTGAGTTTAAGCCTCAACTCAAATGAGCCATCTGCAGCTGGGGACTGTGATCCTCTGTCACCAAAACCATCAACTAGCAGCAACAAGGTTTTCTCATGCAACTTTTGCCTGAGGAAATTCTATAGCTCACAGGCCTTGGGAGGTCATCAAAATGCACACAAAAGAGAAAGAGGAGCTGCCAAAAGGTACCAGTCTCACAGAATGATGATGTCATCAATGGGGTTTCCATTCAACCCTGTAGCTGCAGCAAGGTCACTGGGTGTCCAGCCTCACTCACTTGTGCAGAAGCCAAGCAGATCAGATGGGTCTTCAATGGTGGCAAGATTTAGTGACCCCAGCACAGGTTTTGGGATGGCATGGACACCGTTCATGCTTGAAGAAACCATGGATTTGATTTGGCCAGGAAGTTTTCGTGTGGACAAATTTCCAACACAAGAATCAGATGTACATAATAAGCAGCTGGACTTAAATCTTCGACTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009787 GO:0009788 GO:0009889 GO:0009966 GO:0009968 GO:0009987 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0023051 GO:0023057 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0044424 GO:0044464 GO:0046982 GO:0046983 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901135 GO:1901363 GO:1901419 GO:1901420 GO:1901564 GO:1901657 GO:1903506 GO:1905957 GO:1905958 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

192

Amino Acids

21.38

Weight (kDa)

5.73

Isoelectric Point (pI)

63.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016240)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g16970
malus_domestica	MD02G1180000.v1.1 MD15G1290700.v1.1
prunus_persica	Prupe.6G226200_v2.0.a1
pyrus_communis	pycom02g14590
rosa_chinensis	RchiOBHm_Chr2g0107071
rosa_laevigata	RLG00000017552
rosa_multiflora	Rmu_sc0004298.1_g000006
rosa_roxburghii	Rroxscaffold_2G00136640
rosa_rugosa	Rorug02G0140200
rosa_samantha	Rh2AG191000 Rh2BG202700 Rh2CG195900 Rh2DG198200
rosa_wichuraiana	Rw2G015070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	279
AccB1I	GGYRCC	1 cut(s)	279
AclWI	GGATC	1 cut(s)	137
AcoI	YGGCCR	1 cut(s)	491
AcsI	RAATTY	2 cut(s)	209, 515
AdeI	CACNNNGTG	1 cut(s)	353
AfaI	GTAC	2 cut(s)	281, 540
AfiI	CCNNNNNNNGG	1 cut(s)	434
AgsI	TTSAA	3 cut(s)	325, 405, 470
AjnI	CCWGG	1 cut(s)	493
AluBI	AGCT	5 cut(s)	131, 219, 269, 335, 553
AluI	AGCT	5 cut(s)	131, 219, 269, 335, 553
Alw26I	GTCTC	1 cut(s)	291
AlwI	GGATC	1 cut(s)	137
AoxI	GGCC	2 cut(s)	225, 491
ApeKI	GCWGC	6 cut(s)	128, 171, 269, 335, 338, 550
ApoI	RAATTY	2 cut(s)	209, 515
Asp718I	GGTACC	1 cut(s)	279
AsuHPI	GGTGA	1 cut(s)	144
AxyI	CCTNAGG	1 cut(s)	203
BalI	TGGCCA	1 cut(s)	493
BanI	GGYRCC	1 cut(s)	279
BbsI	GAAGAC	1 cut(s)	393
BbvI	GCAGC	6 cut(s)	140, 183, 256, 322, 350, 562
BccI	CCATC	5 cut(s)	31, 130, 169, 389, 439
BciT130I	CCWGG	1 cut(s)	495
BcoDI	GTCTC	1 cut(s)	291
BfaI	CTAG	1 cut(s)	168
BfmI	CTRYAG	4 cut(s)	126, 214, 330, 336
BisI	GCNGC	6 cut(s)	129, 172, 270, 336, 339, 551
BlsI	GCNGC	6 cut(s)	130, 173, 271, 337, 340, 552
Bme1390I	CCNGG	1 cut(s)	495
BmiI	GGNNCC	1 cut(s)	281
BmrFI	CCNGG	1 cut(s)	495
BmrI	ACTGGG	1 cut(s)	359
BmuI	ACTGGG	1 cut(s)	359
BpiI	GAAGAC	1 cut(s)	393
BsaJI	CCNNGG	2 cut(s)	228, 477
Bsc4I	CCNNNNNNNGG	1 cut(s)	434
Bse1I	ACTGG	2 cut(s)	283, 354
Bse21I	CCTNAGG	1 cut(s)	203
BseBI	CCWGG	1 cut(s)	495
BseDI	CCNNGG	2 cut(s)	228, 477
BseGI	GGATG	1 cut(s)	450
BseLI	CCNNNNNNNGG	1 cut(s)	434
BseMII	CTCAG	1 cut(s)	194
BseNI	ACTGG	2 cut(s)	283, 354
BseRI	GAGGAG	1 cut(s)	279
BseXI	GCAGC	6 cut(s)	140, 183, 256, 322, 350, 562
BseYI	CCCAGC	2 cut(s)	131, 428
BsgI	GTGCAG	1 cut(s)	395
BshFI	GGCC	2 cut(s)	227, 493
BshNI	GGYRCC	1 cut(s)	279
BslFI	GGGAC	1 cut(s)	149
BslI	CCNNNNNNNGG	1 cut(s)	434
BsmAI	GTCTC	1 cut(s)	291
BsmFI	GGGAC	1 cut(s)	149
BsnI	GGCC	2 cut(s)	227, 493
Bsp1407I	TGTACA	1 cut(s)	538
Bsp143I	GATC	2 cut(s)	142, 389
Bsp19I	CCATGG	1 cut(s)	477
BspANI	GGCC	2 cut(s)	227, 493
BspCNI	CTCAG	1 cut(s)	195
BspLI	GGNNCC	1 cut(s)	281
BspMAI	CTGCAG	2 cut(s)	130, 340
BspPI	GGATC	1 cut(s)	137
BspT107I	GGYRCC	1 cut(s)	279
BsrGI	TGTACA	1 cut(s)	538
BsrI	ACTGG	2 cut(s)	283, 354
BssECI	CCNNGG	2 cut(s)	228, 477
BssMI	GATC	2 cut(s)	142, 389
BssT1I	CCWWGG	2 cut(s)	228, 477
Bst2UI	CCWGG	1 cut(s)	495
Bst4CI	ACNGT	3 cut(s)	140, 459, 573
BstAPI	GCANNNNNTGC	1 cut(s)	198
BstAUI	TGTACA	1 cut(s)	538
BstDEI	CTNAG	1 cut(s)	203
BstDSI	CCRYGG	1 cut(s)	477
BstF5I	GGATG	1 cut(s)	450
BstKTI	GATC	2 cut(s)	145, 392
BstMAI	GTCTC	1 cut(s)	291
BstMBI	GATC	2 cut(s)	142, 389
BstMWI	GCNNNNNNNGC	1 cut(s)	198
BstNI	CCWGG	1 cut(s)	495
BstSCI	CCNGG	1 cut(s)	493
BstSFI	CTRYAG	4 cut(s)	126, 214, 330, 336
BstV1I	GCAGC	6 cut(s)	140, 183, 256, 322, 350, 562
BstV2I	GAAGAC	1 cut(s)	393
Bsu36I	CCTNAGG	1 cut(s)	203
BsuRI	GGCC	2 cut(s)	227, 493
BtgI	CCRYGG	1 cut(s)	477
BtsCI	GGATG	1 cut(s)	450
BtsIMutI	CAGTG	1 cut(s)	347
Csp6I	GTAC	2 cut(s)	280, 539
CviAII	CATG	4 cut(s)	189, 450, 463, 478
CviQI	GTAC	2 cut(s)	280, 539
DdeI	CTNAG	1 cut(s)	203
DpnI	GATC	2 cut(s)	144, 391
DpnII	GATC	2 cut(s)	142, 389
DraIII	CACNNNGTG	1 cut(s)	353
EaeI	YGGCCR	1 cut(s)	491
Eco130I	CCWWGG	2 cut(s)	228, 477
Eco147I	AGGCCT	1 cut(s)	227
Eco81I	CCTNAGG	1 cut(s)	203
EcoRII	CCWGG	1 cut(s)	493
EcoT14I	CCWWGG	2 cut(s)	228, 477
ErhI	CCWWGG	2 cut(s)	228, 477
FaeI	CATG	4 cut(s)	192, 453, 466, 481
FaiI	YATR	6 cut(s)	190, 216, 451, 464, 479, 543
FaqI	GGGAC	1 cut(s)	149
FatI	CATG	4 cut(s)	188, 449, 462, 477
Fnu4HI	GCNGC	6 cut(s)	129, 172, 270, 336, 339, 551
FokI	GGATG	1 cut(s)	457
Fsp4HI	GCNGC	6 cut(s)	129, 172, 270, 336, 339, 551
FspBI	CTAG	1 cut(s)	168
GluI	GCNGC	6 cut(s)	129, 172, 270, 336, 339, 551
GsaI	CCCAGC	2 cut(s)	135, 432
HaeIII	GGCC	2 cut(s)	227, 493
Hin1II	CATG	4 cut(s)	192, 453, 466, 481
HinfI	GANTC	1 cut(s)	530
HphI	GGTGA	1 cut(s)	144
Hpy166II	GTNNAC	1 cut(s)	511
Hpy188I	TCNGA	2 cut(s)	394, 535
Hpy8I	GTNNAC	1 cut(s)	511
HpyCH4III	ACNGT	3 cut(s)	140, 459, 573
HpyCH4V	TGCA	5 cut(s)	128, 192, 248, 338, 376
HpyF10VI	GCNNNNNNNGC	1 cut(s)	198
HpyF3I	CTNAG	1 cut(s)	203
Hsp92II	CATG	4 cut(s)	192, 453, 466, 481
KpnI	GGTACC	1 cut(s)	283
Kzo9I	GATC	2 cut(s)	142, 389
LmnI	GCTCC	1 cut(s)	266
Lsp1109I	GCAGC	6 cut(s)	140, 183, 256, 322, 350, 562
MaeI	CTAG	1 cut(s)	168
MaeIII	GTNAC	3 cut(s)	150, 345, 422
MalI	GATC	2 cut(s)	144, 391
MboI	GATC	2 cut(s)	142, 389
MboII	GAAGA	5 cut(s)	35, 83, 393, 482, 557
MlsI	TGGCCA	1 cut(s)	493
MluCI	AATT	2 cut(s)	209, 515
MluNI	TGGCCA	1 cut(s)	493
MmeI	TCCRAC	1 cut(s)	545
MnlI	CCTC	7 cut(s)	61, 116, 156, 198, 227, 257, 372
Mox20I	TGGCCA	1 cut(s)	493
MscI	TGGCCA	1 cut(s)	493
MseI	TTAA	2 cut(s)	101, 560
MslI	CAYNNNNRTG	1 cut(s)	243
Msp20I	TGGCCA	1 cut(s)	493
MspA1I	CMGCKG	2 cut(s)	131, 553
MspR9I	CCNGG	1 cut(s)	495
MvaI	CCWGG	1 cut(s)	495
MwoI	GCNNNNNNNGC	1 cut(s)	198
NcoI	CCATGG	1 cut(s)	477
NdeII	GATC	2 cut(s)	142, 389
NlaIII	CATG	4 cut(s)	192, 453, 466, 481
NlaIV	GGNNCC	1 cut(s)	281
NmuCI	GTSAC	3 cut(s)	150, 345, 422
PceI	AGGCCT	1 cut(s)	227
PfeI	GAWTC	1 cut(s)	530
PkrI	GCNGC	6 cut(s)	130, 173, 271, 337, 340, 552
Psp6I	CCWGG	1 cut(s)	493
PspFI	CCCAGC	2 cut(s)	131, 428
PspGI	CCWGG	1 cut(s)	493
PspN4I	GGNNCC	1 cut(s)	281
PstI	CTGCAG	2 cut(s)	130, 340
PvuII	CAGCTG	2 cut(s)	131, 553
RsaI	GTAC	2 cut(s)	281, 540
RsaNI	GTAC	2 cut(s)	280, 539
RseI	CAYNNNNRTG	1 cut(s)	243
SaqAI	TTAA	2 cut(s)	101, 560
SatI	GCNGC	6 cut(s)	129, 172, 270, 336, 339, 551
Sau3AI	GATC	2 cut(s)	142, 389
ScrFI	CCNGG	1 cut(s)	495
SfcI	CTRYAG	4 cut(s)	126, 214, 330, 336
SmiMI	CAYNNNNRTG	1 cut(s)	243
Sse9I	AATT	2 cut(s)	209, 515
SseBI	AGGCCT	1 cut(s)	227
SspMI	CTAG	1 cut(s)	168
StuI	AGGCCT	1 cut(s)	227
StyD4I	CCNGG	1 cut(s)	493
StyI	CCWWGG	2 cut(s)	228, 477
TaaI	ACNGT	3 cut(s)	140, 459, 573
TaqI	TCGA	1 cut(s)	568
TasI	AATT	2 cut(s)	209, 515
TatI	WGTACW	1 cut(s)	538
TfiI	GAWTC	1 cut(s)	530
Tru1I	TTAA	2 cut(s)	101, 560
Tru9I	TTAA	2 cut(s)	101, 560
TscAI	CASTG	1 cut(s)	354
TseFI	GTSAC	3 cut(s)	150, 345, 422
TseI	GCWGC	6 cut(s)	128, 171, 269, 335, 338, 550
Tsp45I	GTSAC	3 cut(s)	150, 345, 422
TspDTI	ATGAA	1 cut(s)	451
TspRI	CASTG	1 cut(s)	354
XapI	RAATTY	2 cut(s)	209, 515
XspI	CTAG	1 cut(s)	168

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.