Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0016240

Physical Location & Seq

Genomic Coordinates Forward (+)

17372655 .. 17373650

Gene Structure 996 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G015070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGATTCCCACAAGGGCAGAACAAGAAGAAGAAGGAGGAACAAAAGCATATGAGATTGCAGAAAACAACCAGAATTCTGAGTCAAAGCAAAGTGATCATGATCATGATGAAGGAGTAGCTGATCATTATGAGGATGATAATTTGGGAGATTGGTTGAGCTTAAGCCTCAATAAAAATGATCCATCAGCAAAACCAGGCAGTAGTAGCAGCAACAATAAGGTTTTCTCATGCAACTTCTGCATGAGGAAGTTTTATAGCTCACAAGCCTTGGGAGGCCATCAGAATGCACACAAAAGAGAAAGAGGAGCTGCAAAGAGGTACCAATCTCATAGGATGATGATGACAACGATGATGGGGTTTCCCTTCAATTCTGTAGCGGCTCGTTCACTTGGTGTTCAGCCTCATTCACTTGTGCAGAAGGAAACCAGACAAGGGTCTTCGACGGTGGCTCGCACAGGCGGCGATGGTTTGAGCACTGGTTTTGGAATGCCATGGATGCCGTTCATGCTTGAAGATGCTAGGGATATGATTTGGCACGGAAGTTTCCGAGTGGAACACAGATTGCCAAGTAGTACAGATGATCATCATCAATCAGATCATGTACATAATAAACAGCTCGACTTAAATTTACGGCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009787 GO:0009788 GO:0009889 GO:0009966 GO:0009968 GO:0009987 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0023051 GO:0023057 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0044424 GO:0044464 GO:0046982 GO:0046983 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901135 GO:1901363 GO:1901419 GO:1901420 GO:1901564 GO:1901657 GO:1903506 GO:1905957 GO:1905958 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

212

Amino Acids

23.84

Weight (kDa)

6.21

Isoelectric Point (pI)

60.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016240)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g16970
malus_domestica	MD02G1180000.v1.1 MD15G1290700.v1.1
prunus_persica	Prupe.6G226200_v2.0.a1
pyrus_communis	pycom02g14590
rosa_chinensis	RchiOBHm_Chr2g0107071
rosa_laevigata	RLG00000017552
rosa_multiflora	Rmu_sc0004298.1_g000006
rosa_roxburghii	Rroxscaffold_2G00136640
rosa_rugosa	Rorug02G0140200
rosa_samantha	Rh2AG191000 Rh2BG202700 Rh2CG195900 Rh2DG198200
rosa_wichuraiana	Rw2G015070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	318
AccB1I	GGYRCC	1 cut(s)	318
AciI	CCGC	2 cut(s)	377, 459
AclWI	GGATC	1 cut(s)	173
AcsI	RAATTY	2 cut(s)	73, 625
AdeI	CACNNNGTG	1 cut(s)	392
AfaI	GTAC	3 cut(s)	320, 574, 603
AfiI	CCNNNNNNNGG	1 cut(s)	432
AflII	CTTAAG	1 cut(s)	160
AgsI	TTSAA	2 cut(s)	367, 512
AjnI	CCWGG	1 cut(s)	193
AluBI	AGCT	5 cut(s)	119, 159, 258, 308, 616
AluI	AGCT	5 cut(s)	119, 159, 258, 308, 616
Alw21I	GWGCWC	1 cut(s)	476
AlwI	GGATC	1 cut(s)	173
AoxI	GGCC	1 cut(s)	274
ApeKI	GCWGC	2 cut(s)	207, 308
ApoI	RAATTY	2 cut(s)	73, 625
Asp718I	GGTACC	1 cut(s)	318
BanI	GGYRCC	1 cut(s)	318
BbsI	GAAGAC	1 cut(s)	429
Bbv12I	GWGCWC	1 cut(s)	476
BbvI	GCAGC	2 cut(s)	219, 295
BccI	CCATC	4 cut(s)	190, 285, 346, 458
BceAI	ACGGC	1 cut(s)	484
BciT130I	CCWGG	1 cut(s)	195
BclI	TGATCA	4 cut(s)	94, 100, 121, 580
BfaI	CTAG	1 cut(s)	519
BfmI	CTRYAG	1 cut(s)	372
BfrI	CTTAAG	1 cut(s)	160
BisI	GCNGC	4 cut(s)	208, 309, 378, 460
BlsI	GCNGC	4 cut(s)	209, 310, 379, 461
Bme1390I	CCNGG	1 cut(s)	195
BmiI	GGNNCC	1 cut(s)	320
BmrFI	CCNGG	1 cut(s)	195
BmsI	GCATC	2 cut(s)	486, 505
BoxI	GACNNNNGTC	1 cut(s)	433
BpiI	GAAGAC	1 cut(s)	429
BsaBI	GATNNNNATC	3 cut(s)	99, 582, 585
BsaJI	CCNNGG	2 cut(s)	267, 491
Bsc4I	CCNNNNNNNGG	1 cut(s)	432
Bse1I	ACTGG	1 cut(s)	481
Bse8I	GATNNNNATC	3 cut(s)	99, 582, 585
BseBI	CCWGG	1 cut(s)	195
BseDI	CCNNGG	2 cut(s)	267, 491
BseGI	GGATG	3 cut(s)	139, 339, 501
BseJI	GATNNNNATC	3 cut(s)	99, 582, 585
BseLI	CCNNNNNNNGG	1 cut(s)	432
BseMII	CTCAG	1 cut(s)	69
BseNI	ACTGG	1 cut(s)	481
BseRI	GAGGAG	1 cut(s)	318
BseXI	GCAGC	2 cut(s)	219, 295
BsgI	GTGCAG	1 cut(s)	434
BshFI	GGCC	1 cut(s)	276
BshNI	GGYRCC	1 cut(s)	318
BsiHKAI	GWGCWC	1 cut(s)	476
BslI	CCNNNNNNNGG	1 cut(s)	432
BsmI	GAATGC	2 cut(s)	289, 492
BsnI	GGCC	1 cut(s)	276
Bsp1286I	GDGCHC	1 cut(s)	476
Bsp1407I	TGTACA	1 cut(s)	601
Bsp143I	GATC	6 cut(s)	94, 100, 121, 178, 580, 595
Bsp19I	CCATGG	1 cut(s)	491
BspACI	CCGC	2 cut(s)	377, 459
BspANI	GGCC	1 cut(s)	276
BspCNI	CTCAG	1 cut(s)	70
BspHI	TCATGA	2 cut(s)	97, 103
BspLI	GGNNCC	1 cut(s)	320
BspPI	GGATC	1 cut(s)	173
BspT107I	GGYRCC	1 cut(s)	318
BspTI	CTTAAG	1 cut(s)	160
BsrGI	TGTACA	1 cut(s)	601
BsrI	ACTGG	1 cut(s)	481
BssECI	CCNNGG	2 cut(s)	267, 491
BssMI	GATC	6 cut(s)	94, 100, 121, 178, 580, 595
BssT1I	CCWWGG	2 cut(s)	267, 491
Bst2UI	CCWGG	1 cut(s)	195
Bst4CI	ACNGT	1 cut(s)	445
BstAFI	CTTAAG	1 cut(s)	160
BstAPI	GCANNNNNTGC	1 cut(s)	237
BstAUI	TGTACA	1 cut(s)	601
BstC8I	GCNNGC	1 cut(s)	451
BstDEI	CTNAG	1 cut(s)	78
BstDSI	CCRYGG	1 cut(s)	491
BstF5I	GGATG	3 cut(s)	139, 339, 501
BstKTI	GATC	6 cut(s)	97, 103, 124, 181, 583, 598
BstMBI	GATC	6 cut(s)	94, 100, 121, 178, 580, 595
BstMWI	GCNNNNNNNGC	5 cut(s)	204, 237, 459, 496, 505
BstNI	CCWGG	1 cut(s)	195
BstPAI	GACNNNNGTC	1 cut(s)	433
BstSCI	CCNGG	1 cut(s)	193
BstSFI	CTRYAG	1 cut(s)	372
BstV1I	GCAGC	2 cut(s)	219, 295
BstV2I	GAAGAC	1 cut(s)	429
BsuRI	GGCC	1 cut(s)	276
BtgI	CCRYGG	1 cut(s)	491
BtgZI	GCGATG	1 cut(s)	477
BtsCI	GGATG	3 cut(s)	139, 339, 501
BtsIMutI	CAGTG	1 cut(s)	474
Cac8I	GCNNGC	1 cut(s)	451
CciI	TCATGA	2 cut(s)	97, 103
Csp6I	GTAC	3 cut(s)	319, 573, 602
CviAII	CATG	7 cut(s)	98, 104, 228, 241, 492, 505, 599
CviQI	GTAC	3 cut(s)	319, 573, 602
DdeI	CTNAG	1 cut(s)	78
DpnI	GATC	6 cut(s)	96, 102, 123, 180, 582, 597
DpnII	GATC	6 cut(s)	94, 100, 121, 178, 580, 595
DraIII	CACNNNGTG	1 cut(s)	392
Eco130I	CCWWGG	2 cut(s)	267, 491
EcoRI	GAATTC	1 cut(s)	73
EcoRII	CCWGG	1 cut(s)	193
EcoT14I	CCWWGG	2 cut(s)	267, 491
ErhI	CCWWGG	2 cut(s)	267, 491
FaeI	CATG	7 cut(s)	101, 107, 231, 244, 495, 508, 602
FatI	CATG	7 cut(s)	97, 103, 227, 240, 491, 504, 598
FauNDI	CATATG	1 cut(s)	49
FbaI	TGATCA	4 cut(s)	94, 100, 121, 580
Fnu4HI	GCNGC	4 cut(s)	208, 309, 378, 460
FokI	GGATG	3 cut(s)	146, 346, 508
Fsp4HI	GCNGC	4 cut(s)	208, 309, 378, 460
FspBI	CTAG	1 cut(s)	519
GluI	GCNGC	4 cut(s)	208, 309, 378, 460
HaeIII	GGCC	1 cut(s)	276
Hin1II	CATG	7 cut(s)	101, 107, 231, 244, 495, 508, 602
HinfI	GANTC	2 cut(s)	4, 80
Hpy166II	GTNNAC	1 cut(s)	386
Hpy188I	TCNGA	4 cut(s)	79, 282, 548, 595
Hpy188III	TCNNGA	2 cut(s)	98, 104
Hpy8I	GTNNAC	1 cut(s)	386
Hpy99I	CGWCG	1 cut(s)	445
HpyAV	CCTTC	4 cut(s)	26, 104, 373, 412
HpyCH4III	ACNGT	1 cut(s)	445
HpyCH4V	TGCA	6 cut(s)	59, 231, 240, 287, 311, 415
HpyF10VI	GCNNNNNNNGC	5 cut(s)	204, 237, 459, 496, 505
HpyF3I	CTNAG	1 cut(s)	78
Hsp92II	CATG	7 cut(s)	101, 107, 231, 244, 495, 508, 602
KpnI	GGTACC	1 cut(s)	322
Ksp22I	TGATCA	4 cut(s)	94, 100, 121, 580
Kzo9I	GATC	6 cut(s)	94, 100, 121, 178, 580, 595
LmnI	GCTCC	1 cut(s)	305
LpnPI	CCDG	6 cut(s)	83, 180, 207, 439, 441, 462
Lsp1109I	GCAGC	2 cut(s)	219, 295
LweI	GCATC	2 cut(s)	486, 505
MaeI	CTAG	1 cut(s)	519
MalI	GATC	6 cut(s)	96, 102, 123, 180, 582, 597
MboI	GATC	6 cut(s)	94, 100, 121, 178, 580, 595
MboII	GAAGA	4 cut(s)	38, 41, 429, 524
MhlI	GDGCHC	1 cut(s)	476
MluCI	AATT	4 cut(s)	73, 139, 367, 625
MlyI	GAGTC	1 cut(s)	89
MnlI	CCTC	8 cut(s)	29, 124, 176, 237, 266, 296, 309, 411
MseI	TTAA	2 cut(s)	161, 623
MslI	CAYNNNNRTG	2 cut(s)	102, 282
MspCI	CTTAAG	1 cut(s)	160
MspR9I	CCNGG	1 cut(s)	195
Mva1269I	GAATGC	2 cut(s)	289, 492
MvaI	CCWGG	1 cut(s)	195
MwoI	GCNNNNNNNGC	5 cut(s)	204, 237, 459, 496, 505
NcoI	CCATGG	1 cut(s)	491
NdeI	CATATG	1 cut(s)	49
NdeII	GATC	6 cut(s)	94, 100, 121, 178, 580, 595
NlaIII	CATG	7 cut(s)	101, 107, 231, 244, 495, 508, 602
NlaIV	GGNNCC	1 cut(s)	320
PagI	TCATGA	2 cut(s)	97, 103
PctI	GAATGC	2 cut(s)	289, 492
PfeI	GAWTC	1 cut(s)	4
PkrI	GCNGC	4 cut(s)	209, 310, 379, 461
PleI	GAGTC	1 cut(s)	88
PpsI	GAGTC	1 cut(s)	88
PshAI	GACNNNNGTC	1 cut(s)	433
Psp6I	CCWGG	1 cut(s)	193
PspGI	CCWGG	1 cut(s)	193
PspN4I	GGNNCC	1 cut(s)	320
RsaI	GTAC	3 cut(s)	320, 574, 603
RsaNI	GTAC	3 cut(s)	319, 573, 602
RseI	CAYNNNNRTG	2 cut(s)	102, 282
SaqAI	TTAA	2 cut(s)	161, 623
SatI	GCNGC	4 cut(s)	208, 309, 378, 460
Sau3AI	GATC	6 cut(s)	94, 100, 121, 178, 580, 595
SchI	GAGTC	1 cut(s)	89
ScrFI	CCNGG	1 cut(s)	195
SduI	GDGCHC	1 cut(s)	476
SetI	ASST	7 cut(s)	121, 161, 222, 260, 310, 320, 618
SfaNI	GCATC	2 cut(s)	486, 505
SfcI	CTRYAG	1 cut(s)	372
SmiMI	CAYNNNNRTG	2 cut(s)	102, 282
SmlI	CTYRAG	1 cut(s)	160
SmoI	CTYRAG	1 cut(s)	160
Sse9I	AATT	4 cut(s)	73, 139, 367, 625
SsiI	CCGC	2 cut(s)	377, 459
SspMI	CTAG	1 cut(s)	519
StyD4I	CCNGG	1 cut(s)	193
StyI	CCWWGG	2 cut(s)	267, 491
TaaI	ACNGT	1 cut(s)	445
TaqI	TCGA	2 cut(s)	440, 618
TasI	AATT	4 cut(s)	73, 139, 367, 625
TatI	WGTACW	2 cut(s)	572, 601
TauI	GCSGC	2 cut(s)	380, 462
TfiI	GAWTC	1 cut(s)	4
Tru1I	TTAA	2 cut(s)	161, 623
Tru9I	TTAA	2 cut(s)	161, 623
TscAI	CASTG	1 cut(s)	481
TseI	GCWGC	2 cut(s)	207, 308
TspDTI	ATGAA	2 cut(s)	123, 493
TspGWI	ACGGA	1 cut(s)	552
TspRI	CASTG	1 cut(s)	481
Vha464I	CTTAAG	1 cut(s)	160
XapI	RAATTY	2 cut(s)	73, 625
XspI	CTAG	1 cut(s)	519

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.