Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0016240

Physical Location & Seq

Genomic Coordinates Forward (+)

18159911 .. 18160540

Gene Structure 630 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000017552

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGATTCCCACAAGGGCAGAACAAGAAGAAGAAAAAACATATGAGATTGCAGAAAACAACCAGGATTCTGAGTCAAAGCAAAGTGATCATCATGATGATGAAGGAGTAGCTGATCATCATGAGGATGATAATTTGGGAGATTGGTTGAGCTTAAGCCTCAAGAAAAATGATCCATCATCAAAACCAGGCAGTAGTAGCAGCAACAATAAGGTTTTCTCATGCAACTTCTGCATGAGGAAGTTTTATAGCTCACAAGCCTTGGGAGGCCATCAGAATGCACACAAAAGAGAAAGAGGAGCTGCAAAGAGGTACCAATCTCATAGGATGATGATGACAACGATGATGGGGTTTCCCTTCAATTCTGTAGCGGCTCGTTCACTTGGTGTTCAGCCTCATTCACTTGTGAAGAAGGAAACCAGACAAGGGTCTTCGACGGTGGCTCACTCCGGCGGCGATGGTTTGAGCACTGGTTTTGGAATGCCATGGATGCCATTCATGCTTGAAGATGCTATGGATATGATTTGGCCCGGAAGTTTCCGAGTGGAACACAGATTGCCAAGTGGTACAGATGATCATCATCAATCAGATCATGTACATAATAAACAGCTCGACTTAAATTTACGGCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009787 GO:0009788 GO:0009889 GO:0009966 GO:0009968 GO:0009987 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0023051 GO:0023057 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0044424 GO:0044464 GO:0046982 GO:0046983 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901135 GO:1901363 GO:1901419 GO:1901420 GO:1901564 GO:1901657 GO:1903506 GO:1905957 GO:1905958 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

210

Amino Acids

23.53

Weight (kDa)

6.14

Isoelectric Point (pI)

58.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016240)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g16970
malus_domestica	MD02G1180000.v1.1 MD15G1290700.v1.1
prunus_persica	Prupe.6G226200_v2.0.a1
pyrus_communis	pycom02g14590
rosa_chinensis	RchiOBHm_Chr2g0107071
rosa_laevigata	RLG00000017552
rosa_multiflora	Rmu_sc0004298.1_g000006
rosa_roxburghii	Rroxscaffold_2G00136640
rosa_rugosa	Rorug02G0140200
rosa_samantha	Rh2AG191000 Rh2BG202700 Rh2CG195900 Rh2DG198200
rosa_wichuraiana	Rw2G015070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	309
AccB1I	GGYRCC	1 cut(s)	309
AciI	CCGC	2 cut(s)	368, 450
AclWI	GGATC	1 cut(s)	164
AcsI	RAATTY	1 cut(s)	616
AdeI	CACNNNGTG	1 cut(s)	383
AfaI	GTAC	3 cut(s)	311, 565, 594
AfiI	CCNNNNNNNGG	1 cut(s)	423
AflII	CTTAAG	1 cut(s)	151
AgsI	TTSAA	2 cut(s)	358, 503
AjnI	CCWGG	2 cut(s)	60, 184
AluBI	AGCT	5 cut(s)	110, 150, 249, 299, 607
AluI	AGCT	5 cut(s)	110, 150, 249, 299, 607
Alw21I	GWGCWC	1 cut(s)	467
AlwI	GGATC	1 cut(s)	164
AoxI	GGCC	2 cut(s)	265, 524
ApeKI	GCWGC	2 cut(s)	198, 299
ApoI	RAATTY	1 cut(s)	616
Asp718I	GGTACC	1 cut(s)	309
AspS9I	GGNCC	1 cut(s)	525
AsuC2I	CCSGG	1 cut(s)	528
BanI	GGYRCC	1 cut(s)	309
BbsI	GAAGAC	1 cut(s)	420
Bbv12I	GWGCWC	1 cut(s)	467
BbvI	GCAGC	2 cut(s)	210, 286
BccI	CCATC	4 cut(s)	181, 276, 337, 449
BciT130I	CCWGG	2 cut(s)	62, 186
BclI	TGATCA	3 cut(s)	85, 112, 571
BcnI	CCSGG	1 cut(s)	528
BfmI	CTRYAG	1 cut(s)	363
BfrI	CTTAAG	1 cut(s)	151
BisI	GCNGC	4 cut(s)	199, 300, 369, 451
BlsI	GCNGC	4 cut(s)	200, 301, 370, 452
Bme1390I	CCNGG	3 cut(s)	62, 186, 528
BmgT120I	GGNCC	1 cut(s)	525
BmiI	GGNNCC	1 cut(s)	311
BmrFI	CCNGG	3 cut(s)	62, 186, 528
BmsI	GCATC	2 cut(s)	477, 496
BoxI	GACNNNNGTC	1 cut(s)	424
BpiI	GAAGAC	1 cut(s)	420
BpuEI	CTTGAG	1 cut(s)	143
BpuMI	CCSGG	1 cut(s)	528
BsaBI	GATNNNNATC	2 cut(s)	573, 576
BsaJI	CCNNGG	2 cut(s)	258, 482
Bsc4I	CCNNNNNNNGG	1 cut(s)	423
Bse1I	ACTGG	1 cut(s)	472
Bse8I	GATNNNNATC	2 cut(s)	573, 576
BseBI	CCWGG	2 cut(s)	62, 186
BseDI	CCNNGG	2 cut(s)	258, 482
BseGI	GGATG	3 cut(s)	130, 330, 492
BseJI	GATNNNNATC	2 cut(s)	573, 576
BseLI	CCNNNNNNNGG	1 cut(s)	423
BseMII	CTCAG	1 cut(s)	60
BseNI	ACTGG	1 cut(s)	472
BseRI	GAGGAG	1 cut(s)	309
BseXI	GCAGC	2 cut(s)	210, 286
BshFI	GGCC	2 cut(s)	267, 526
BshNI	GGYRCC	1 cut(s)	309
BsiHKAI	GWGCWC	1 cut(s)	467
BsiSI	CCGG	2 cut(s)	447, 528
BslI	CCNNNNNNNGG	1 cut(s)	423
BsmI	GAATGC	2 cut(s)	280, 483
BsnI	GGCC	2 cut(s)	267, 526
Bsp1286I	GDGCHC	1 cut(s)	467
Bsp1407I	TGTACA	1 cut(s)	592
Bsp143I	GATC	5 cut(s)	85, 112, 169, 571, 586
Bsp19I	CCATGG	1 cut(s)	482
BspACI	CCGC	2 cut(s)	368, 450
BspANI	GGCC	2 cut(s)	267, 526
BspCNI	CTCAG	1 cut(s)	61
BspHI	TCATGA	2 cut(s)	91, 118
BspLI	GGNNCC	1 cut(s)	311
BspPI	GGATC	1 cut(s)	164
BspT107I	GGYRCC	1 cut(s)	309
BspTI	CTTAAG	1 cut(s)	151
BsrGI	TGTACA	1 cut(s)	592
BsrI	ACTGG	1 cut(s)	472
BssECI	CCNNGG	2 cut(s)	258, 482
BssMI	GATC	5 cut(s)	85, 112, 169, 571, 586
BssT1I	CCWWGG	2 cut(s)	258, 482
Bst2UI	CCWGG	2 cut(s)	62, 186
Bst4CI	ACNGT	1 cut(s)	436
BstAFI	CTTAAG	1 cut(s)	151
BstAPI	GCANNNNNTGC	1 cut(s)	228
BstAUI	TGTACA	1 cut(s)	592
BstDEI	CTNAG	1 cut(s)	69
BstDSI	CCRYGG	1 cut(s)	482
BstF5I	GGATG	3 cut(s)	130, 330, 492
BstKTI	GATC	5 cut(s)	88, 115, 172, 574, 589
BstMBI	GATC	5 cut(s)	85, 112, 169, 571, 586
BstMWI	GCNNNNNNNGC	4 cut(s)	195, 228, 487, 496
BstNI	CCWGG	2 cut(s)	62, 186
BstPAI	GACNNNNGTC	1 cut(s)	424
BstSCI	CCNGG	3 cut(s)	60, 184, 526
BstSFI	CTRYAG	1 cut(s)	363
BstV1I	GCAGC	2 cut(s)	210, 286
BstV2I	GAAGAC	1 cut(s)	420
BsuRI	GGCC	2 cut(s)	267, 526
BtgI	CCRYGG	1 cut(s)	482
BtgZI	GCGATG	1 cut(s)	468
BtsCI	GGATG	3 cut(s)	130, 330, 492
BtsIMutI	CAGTG	1 cut(s)	465
CciI	TCATGA	2 cut(s)	91, 118
Cfr13I	GGNCC	1 cut(s)	525
Csp6I	GTAC	3 cut(s)	310, 564, 593
CviAII	CATG	7 cut(s)	92, 119, 219, 232, 483, 496, 590
CviQI	GTAC	3 cut(s)	310, 564, 593
DdeI	CTNAG	1 cut(s)	69
DpnI	GATC	5 cut(s)	87, 114, 171, 573, 588
DpnII	GATC	5 cut(s)	85, 112, 169, 571, 586
DraIII	CACNNNGTG	1 cut(s)	383
Eco130I	CCWWGG	2 cut(s)	258, 482
EcoRII	CCWGG	2 cut(s)	60, 184
EcoT14I	CCWWGG	2 cut(s)	258, 482
ErhI	CCWWGG	2 cut(s)	258, 482
FaeI	CATG	7 cut(s)	95, 122, 222, 235, 486, 499, 593
FatI	CATG	7 cut(s)	91, 118, 218, 231, 482, 495, 589
FauNDI	CATATG	1 cut(s)	40
FbaI	TGATCA	3 cut(s)	85, 112, 571
Fnu4HI	GCNGC	4 cut(s)	199, 300, 369, 451
FokI	GGATG	3 cut(s)	137, 337, 499
Fsp4HI	GCNGC	4 cut(s)	199, 300, 369, 451
GluI	GCNGC	4 cut(s)	199, 300, 369, 451
HaeIII	GGCC	2 cut(s)	267, 526
HapII	CCGG	2 cut(s)	447, 528
Hin1II	CATG	7 cut(s)	95, 122, 222, 235, 486, 499, 593
HinfI	GANTC	3 cut(s)	4, 65, 71
HpaII	CCGG	2 cut(s)	447, 528
Hpy166II	GTNNAC	1 cut(s)	377
Hpy188I	TCNGA	4 cut(s)	70, 273, 539, 586
Hpy188III	TCNNGA	3 cut(s)	92, 119, 160
Hpy8I	GTNNAC	1 cut(s)	377
Hpy99I	CGWCG	1 cut(s)	436
HpyAV	CCTTC	3 cut(s)	95, 364, 403
HpyCH4III	ACNGT	1 cut(s)	436
HpyCH4V	TGCA	5 cut(s)	50, 222, 231, 278, 302
HpyF10VI	GCNNNNNNNGC	4 cut(s)	195, 228, 487, 496
HpyF3I	CTNAG	1 cut(s)	69
Hsp92II	CATG	7 cut(s)	95, 122, 222, 235, 486, 499, 593
KpnI	GGTACC	1 cut(s)	313
Ksp22I	TGATCA	3 cut(s)	85, 112, 571
Kzo9I	GATC	5 cut(s)	85, 112, 169, 571, 586
LmnI	GCTCC	1 cut(s)	296
LpnPI	CCDG	8 cut(s)	47, 74, 171, 198, 430, 453, 460, 541
Lsp1109I	GCAGC	2 cut(s)	210, 286
LweI	GCATC	2 cut(s)	477, 496
MalI	GATC	5 cut(s)	87, 114, 171, 573, 588
MboI	GATC	5 cut(s)	85, 112, 169, 571, 586
MboII	GAAGA	5 cut(s)	38, 41, 418, 420, 515
MhlI	GDGCHC	1 cut(s)	467
MluCI	AATT	3 cut(s)	130, 358, 616
MlyI	GAGTC	1 cut(s)	80
MnlI	CCTC	7 cut(s)	115, 167, 228, 257, 287, 300, 402
MseI	TTAA	2 cut(s)	152, 614
MslI	CAYNNNNRTG	4 cut(s)	93, 96, 123, 273
MspCI	CTTAAG	1 cut(s)	151
MspI	CCGG	2 cut(s)	447, 528
MspR9I	CCNGG	3 cut(s)	62, 186, 528
Mva1269I	GAATGC	2 cut(s)	280, 483
MvaI	CCWGG	2 cut(s)	62, 186
MwoI	GCNNNNNNNGC	4 cut(s)	195, 228, 487, 496
NciI	CCSGG	1 cut(s)	528
NcoI	CCATGG	1 cut(s)	482
NdeI	CATATG	1 cut(s)	40
NdeII	GATC	5 cut(s)	85, 112, 169, 571, 586
NlaIII	CATG	7 cut(s)	95, 122, 222, 235, 486, 499, 593
NlaIV	GGNNCC	1 cut(s)	311
PagI	TCATGA	2 cut(s)	91, 118
PctI	GAATGC	2 cut(s)	280, 483
PfeI	GAWTC	2 cut(s)	4, 65
PkrI	GCNGC	4 cut(s)	200, 301, 370, 452
PleI	GAGTC	1 cut(s)	79
PpsI	GAGTC	1 cut(s)	79
PshAI	GACNNNNGTC	1 cut(s)	424
Psp6I	CCWGG	2 cut(s)	60, 184
PspGI	CCWGG	2 cut(s)	60, 184
PspN4I	GGNNCC	1 cut(s)	311
PspPI	GGNCC	1 cut(s)	525
RsaI	GTAC	3 cut(s)	311, 565, 594
RsaNI	GTAC	3 cut(s)	310, 564, 593
RseI	CAYNNNNRTG	4 cut(s)	93, 96, 123, 273
SaqAI	TTAA	2 cut(s)	152, 614
SatI	GCNGC	4 cut(s)	199, 300, 369, 451
Sau3AI	GATC	5 cut(s)	85, 112, 169, 571, 586
Sau96I	GGNCC	1 cut(s)	525
SchI	GAGTC	1 cut(s)	80
ScrFI	CCNGG	3 cut(s)	62, 186, 528
SduI	GDGCHC	1 cut(s)	467
SetI	ASST	7 cut(s)	112, 152, 213, 251, 301, 311, 609
SfaNI	GCATC	2 cut(s)	477, 496
SfcI	CTRYAG	1 cut(s)	363
SmiMI	CAYNNNNRTG	4 cut(s)	93, 96, 123, 273
SmlI	CTYRAG	2 cut(s)	151, 158
SmoI	CTYRAG	2 cut(s)	151, 158
Sse9I	AATT	3 cut(s)	130, 358, 616
SsiI	CCGC	2 cut(s)	368, 450
StyD4I	CCNGG	3 cut(s)	60, 184, 526
StyI	CCWWGG	2 cut(s)	258, 482
TaaI	ACNGT	1 cut(s)	436
TaqI	TCGA	2 cut(s)	431, 609
TasI	AATT	3 cut(s)	130, 358, 616
TatI	WGTACW	1 cut(s)	592
TauI	GCSGC	2 cut(s)	371, 453
TfiI	GAWTC	2 cut(s)	4, 65
Tru1I	TTAA	2 cut(s)	152, 614
Tru9I	TTAA	2 cut(s)	152, 614
TscAI	CASTG	1 cut(s)	472
TseI	GCWGC	2 cut(s)	198, 299
TspDTI	ATGAA	2 cut(s)	114, 484
TspRI	CASTG	1 cut(s)	472
Vha464I	CTTAAG	1 cut(s)	151
XapI	RAATTY	1 cut(s)	616

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.