Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0016240

Physical Location & Seq

Genomic Coordinates Forward (+)

15997939 .. 15998550

Gene Structure 612 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1180000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGATTCCCAAAAGGGAGCAAGAACGAGAAGCAGAAGCACTGGAAGCAAATGATGAGATTACAGAAAGTAATGATGAAAGATTAGCTGATGATCATGAATATGATAATTTGGGAGACTGGTTGAGTTTAAGCCTCAACTCCAACGAGCCATCCGCGGCGGAAGTTGACGCCGATTTTCCGTCACCAAAACCCTCAAATAGCAACAAAGTTTTCTCATGCAACTTCTGTCTGAGGAAGTTTTACAGCTCACAAGCCTTGGGAGGCCATCAAAACGCACACAAGAGAGAGAGGGGAGCTGCCAAAAGGTATCACTCTCACAAAATGATGATGTCAGCAATGGGGTTTCCGTTCAGCCCTATGGCTGCAGCAGCTAGGTCACTTGGCGTCCAGCCTCATTCACTCGTGCAGAAACCTAGCAGCAGGTCTGATGGGTCGTTAACGGTGGCGAGATTTAGTGACGCCGCCGCAGGTTTTGGGATGGCATGGATACCCTTCATGCTTGAAGAAACCATGGATAATATTTGGCCCGGAAGTTTCCGGGTGGATCATCAATTGCCACGACAAGAATCAGATGTACATAATAAGCAGCTGGACTTAAATCTTCGGCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009787 GO:0009788 GO:0009889 GO:0009966 GO:0009968 GO:0009987 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0023051 GO:0023057 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0044424 GO:0044464 GO:0046982 GO:0046983 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901135 GO:1901363 GO:1901419 GO:1901420 GO:1901564 GO:1901657 GO:1903506 GO:1905957 GO:1905958 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

204

Amino Acids

22.75

Weight (kDa)

5.6

Isoelectric Point (pI)

62.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016240)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g16970
malus_domestica	MD02G1180000.v1.1 MD15G1290700.v1.1
prunus_persica	Prupe.6G226200_v2.0.a1
pyrus_communis	pycom02g14590
rosa_chinensis	RchiOBHm_Chr2g0107071
rosa_laevigata	RLG00000017552
rosa_multiflora	Rmu_sc0004298.1_g000006
rosa_roxburghii	Rroxscaffold_2G00136640
rosa_rugosa	Rorug02G0140200
rosa_samantha	Rh2AG191000 Rh2BG202700 Rh2CG195900 Rh2DG198200
rosa_wichuraiana	Rw2G015070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	411, 458
AccII	CGCG	1 cut(s)	155
AciI	CCGC	5 cut(s)	153, 155, 158, 462, 465
AclWI	GGATC	1 cut(s)	552
AcyI	GRCGYC	3 cut(s)	168, 384, 459
AfaI	GTAC	1 cut(s)	576
AgsI	TTSAA	1 cut(s)	503
AluBI	AGCT	5 cut(s)	86, 246, 296, 371, 589
AluI	AGCT	5 cut(s)	86, 246, 296, 371, 589
Alw26I	GTCTC	1 cut(s)	108
AlwI	GGATC	1 cut(s)	552
AoxI	GGCC	2 cut(s)	262, 524
ApeKI	GCWGC	6 cut(s)	296, 362, 365, 368, 417, 586
AspS9I	GGNCC	1 cut(s)	525
AsuC2I	CCSGG	2 cut(s)	528, 539
AsuHPI	GGTGA	1 cut(s)	174
BauI	CACGAG	1 cut(s)	401
BbvI	GCAGC	6 cut(s)	283, 349, 377, 380, 429, 598
BccI	CCATC	4 cut(s)	157, 273, 422, 472
BciVI	GTATCC	1 cut(s)	480
BclI	TGATCA	1 cut(s)	91
BcnI	CCSGG	2 cut(s)	528, 539
BcoDI	GTCTC	1 cut(s)	108
BfaI	CTAG	2 cut(s)	372, 414
BfmI	CTRYAG	1 cut(s)	363
BfuAI	ACCTGC	2 cut(s)	411, 458
BfuI	GTATCC	1 cut(s)	480
BisI	GCNGC	9 cut(s)	156, 297, 363, 366, 369, 418, 462, 465, 587
BlsI	GCNGC	9 cut(s)	157, 298, 364, 367, 370, 419, 463, 466, 588
Bme1390I	CCNGG	2 cut(s)	528, 539
BmgT120I	GGNCC	1 cut(s)	525
BmrFI	CCNGG	2 cut(s)	528, 539
BpuMI	CCSGG	2 cut(s)	528, 539
BsaHI	GRCGYC	3 cut(s)	168, 384, 459
BsaJI	CCNNGG	3 cut(s)	153, 255, 510
Bse1I	ACTGG	2 cut(s)	45, 122
Bse3DI	GCAATG	1 cut(s)	342
BseDI	CCNNGG	3 cut(s)	153, 255, 510
BseGI	GGATG	2 cut(s)	149, 483
BseMI	GCAATG	1 cut(s)	342
BseMII	CTCAG	1 cut(s)	221
BseNI	ACTGG	2 cut(s)	45, 122
BseXI	GCAGC	6 cut(s)	283, 349, 377, 380, 429, 598
BsgI	GTGCAG	1 cut(s)	425
Bsh1236I	CGCG	1 cut(s)	155
BshFI	GGCC	2 cut(s)	264, 526
BsiSI	CCGG	2 cut(s)	528, 538
BsmAI	GTCTC	1 cut(s)	108
BsnI	GGCC	2 cut(s)	264, 526
Bsp1407I	TGTACA	1 cut(s)	574
Bsp143I	GATC	2 cut(s)	91, 544
Bsp19I	CCATGG	1 cut(s)	510
BspACI	CCGC	5 cut(s)	153, 155, 158, 462, 465
BspANI	GGCC	2 cut(s)	264, 526
BspCNI	CTCAG	1 cut(s)	222
BspFNI	CGCG	1 cut(s)	155
BspHI	TCATGA	1 cut(s)	94
BspMAI	CTGCAG	1 cut(s)	367
BspMI	ACCTGC	2 cut(s)	411, 458
BspPI	GGATC	1 cut(s)	552
BsrDI	GCAATG	1 cut(s)	342
BsrGI	TGTACA	1 cut(s)	574
BsrI	ACTGG	2 cut(s)	45, 122
BssECI	CCNNGG	3 cut(s)	153, 255, 510
BssMI	GATC	2 cut(s)	91, 544
BssNI	GRCGYC	3 cut(s)	168, 384, 459
BssSI	CACGAG	1 cut(s)	401
BssT1I	CCWWGG	2 cut(s)	255, 510
Bst2BI	CACGAG	1 cut(s)	401
Bst4CI	ACNGT	1 cut(s)	442
BstACI	GRCGYC	3 cut(s)	168, 384, 459
BstAUI	TGTACA	1 cut(s)	574
BstDEI	CTNAG	1 cut(s)	230
BstDSI	CCRYGG	2 cut(s)	153, 510
BstF5I	GGATG	2 cut(s)	149, 483
BstFNI	CGCG	1 cut(s)	155
BstKTI	GATC	2 cut(s)	94, 547
BstMAI	GTCTC	1 cut(s)	108
BstMBI	GATC	2 cut(s)	91, 544
BstMWI	GCNNNNNNNGC	2 cut(s)	44, 368
BstSCI	CCNGG	2 cut(s)	526, 537
BstSFI	CTRYAG	1 cut(s)	363
BstUI	CGCG	1 cut(s)	155
BstV1I	GCAGC	6 cut(s)	283, 349, 377, 380, 429, 598
BsuI	GTATCC	1 cut(s)	480
BsuRI	GGCC	2 cut(s)	264, 526
BtgI	CCRYGG	2 cut(s)	153, 510
BtsCI	GGATG	2 cut(s)	149, 483
BtsIMutI	CAGTG	1 cut(s)	38
BveI	ACCTGC	2 cut(s)	411, 458
CciI	TCATGA	1 cut(s)	94
Cfr13I	GGNCC	1 cut(s)	525
Cfr42I	CCGCGG	1 cut(s)	156
CseI	GACGC	3 cut(s)	176, 373, 467
Csp6I	GTAC	1 cut(s)	575
CviAII	CATG	5 cut(s)	95, 216, 483, 496, 511
CviQI	GTAC	1 cut(s)	575
DdeI	CTNAG	1 cut(s)	230
DpnI	GATC	2 cut(s)	93, 546
DpnII	GATC	2 cut(s)	91, 544
EciI	GGCGGA	1 cut(s)	173
Eco130I	CCWWGG	2 cut(s)	255, 510
EcoT14I	CCWWGG	2 cut(s)	255, 510
ErhI	CCWWGG	2 cut(s)	255, 510
FaeI	CATG	5 cut(s)	98, 219, 486, 499, 514
FaiI	YATR	8 cut(s)	96, 102, 217, 359, 484, 497, 512, 579
FatI	CATG	5 cut(s)	94, 215, 482, 495, 510
FbaI	TGATCA	1 cut(s)	91
Fnu4HI	GCNGC	9 cut(s)	156, 297, 363, 366, 369, 418, 462, 465, 587
FokI	GGATG	2 cut(s)	136, 490
Fsp4HI	GCNGC	9 cut(s)	156, 297, 363, 366, 369, 418, 462, 465, 587
FspBI	CTAG	2 cut(s)	372, 414
GluI	GCNGC	9 cut(s)	156, 297, 363, 366, 369, 418, 462, 465, 587
HaeIII	GGCC	2 cut(s)	264, 526
HapII	CCGG	2 cut(s)	528, 538
HgaI	GACGC	3 cut(s)	176, 373, 467
Hin1I	GRCGYC	3 cut(s)	168, 384, 459
Hin1II	CATG	5 cut(s)	98, 219, 486, 499, 514
HincII	GTYRAC	2 cut(s)	166, 438
HindII	GTYRAC	2 cut(s)	166, 438
HinfI	GANTC	2 cut(s)	4, 566
HpaI	GTTAAC	1 cut(s)	438
HpaII	CCGG	2 cut(s)	528, 538
HphI	GGTGA	1 cut(s)	174
Hpy166II	GTNNAC	2 cut(s)	166, 438
Hpy188I	TCNGA	3 cut(s)	231, 427, 571
Hpy188III	TCNNGA	1 cut(s)	95
Hpy8I	GTNNAC	2 cut(s)	166, 438
HpyAV	CCTTC	1 cut(s)	502
HpyCH4III	ACNGT	1 cut(s)	442
HpyCH4V	TGCA	3 cut(s)	219, 365, 406
HpyF10VI	GCNNNNNNNGC	2 cut(s)	44, 368
HpyF3I	CTNAG	1 cut(s)	230
Hsp92I	GRCGYC	3 cut(s)	168, 384, 459
Hsp92II	CATG	5 cut(s)	98, 219, 486, 499, 514
Ksp22I	TGATCA	1 cut(s)	91
KspAI	GTTAAC	1 cut(s)	438
KspI	CCGCGG	1 cut(s)	156
Kzo9I	GATC	2 cut(s)	91, 544
LmnI	GCTCC	2 cut(s)	16, 293
LpnPI	CCDG	8 cut(s)	26, 103, 401, 406, 453, 541, 551, 575
Lsp1109I	GCAGC	6 cut(s)	283, 349, 377, 380, 429, 598
MaeI	CTAG	2 cut(s)	372, 414
MaeIII	GTNAC	3 cut(s)	180, 375, 455
MalI	GATC	2 cut(s)	93, 546
MboI	GATC	2 cut(s)	91, 544
MboII	GAAGA	2 cut(s)	515, 593
MfeI	CAATTG	1 cut(s)	551
MluCI	AATT	2 cut(s)	106, 551
MmeI	TCCRAC	1 cut(s)	165
MnlI	CCTC	6 cut(s)	143, 202, 225, 254, 282, 402
MseI	TTAA	3 cut(s)	128, 437, 596
MslI	CAYNNNNRTG	1 cut(s)	99
MspA1I	CMGCKG	2 cut(s)	155, 589
MspI	CCGG	2 cut(s)	528, 538
MspR9I	CCNGG	2 cut(s)	528, 539
MunI	CAATTG	1 cut(s)	551
MvnI	CGCG	1 cut(s)	155
MwoI	GCNNNNNNNGC	2 cut(s)	44, 368
NciI	CCSGG	2 cut(s)	528, 539
NcoI	CCATGG	1 cut(s)	510
NdeII	GATC	2 cut(s)	91, 544
NlaIII	CATG	5 cut(s)	98, 219, 486, 499, 514
NmuCI	GTSAC	3 cut(s)	180, 375, 455
PagI	TCATGA	1 cut(s)	94
PfeI	GAWTC	2 cut(s)	4, 566
PkrI	GCNGC	9 cut(s)	157, 298, 364, 367, 370, 419, 463, 466, 588
PspPI	GGNCC	1 cut(s)	525
PstI	CTGCAG	1 cut(s)	367
PvuII	CAGCTG	1 cut(s)	589
RsaI	GTAC	1 cut(s)	576
RsaNI	GTAC	1 cut(s)	575
RseI	CAYNNNNRTG	1 cut(s)	99
SacII	CCGCGG	1 cut(s)	156
SaqAI	TTAA	3 cut(s)	128, 437, 596
SatI	GCNGC	9 cut(s)	156, 297, 363, 366, 369, 418, 462, 465, 587
Sau3AI	GATC	2 cut(s)	91, 544
Sau96I	GGNCC	1 cut(s)	525
ScrFI	CCNGG	2 cut(s)	528, 539
SfcI	CTRYAG	1 cut(s)	363
Sfr303I	CCGCGG	1 cut(s)	156
SgrBI	CCGCGG	1 cut(s)	156
SmiMI	CAYNNNNRTG	1 cut(s)	99
Sse9I	AATT	2 cut(s)	106, 551
SsiI	CCGC	5 cut(s)	153, 155, 158, 462, 465
SspI	AATATT	1 cut(s)	520
SspMI	CTAG	2 cut(s)	372, 414
StyD4I	CCNGG	2 cut(s)	526, 537
StyI	CCWWGG	2 cut(s)	255, 510
TaaI	ACNGT	1 cut(s)	442
TasI	AATT	2 cut(s)	106, 551
TatI	WGTACW	1 cut(s)	574
TauI	GCSGC	3 cut(s)	158, 464, 467
TfiI	GAWTC	2 cut(s)	4, 566
Tru1I	TTAA	3 cut(s)	128, 437, 596
Tru9I	TTAA	3 cut(s)	128, 437, 596
TscAI	CASTG	1 cut(s)	45
TseFI	GTSAC	3 cut(s)	180, 375, 455
TseI	GCWGC	6 cut(s)	296, 362, 365, 368, 417, 586
Tsp45I	GTSAC	3 cut(s)	180, 375, 455
TspDTI	ATGAA	3 cut(s)	90, 111, 484
TspGWI	ACGGA	2 cut(s)	168, 336
TspRI	CASTG	1 cut(s)	45
XspI	CTAG	2 cut(s)	372, 414

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.