Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004298.1

Orthogroup ID

OG0016240

Physical Location & Seq

Genomic Coordinates Forward (+)

17947 .. 18724

Gene Structure 778 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004298.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

atgattcccacaagggcagaacaagaagaagaagaagaaggaaaaaaagcatatgagattgcagaaaacaaccaggattctgagtcaaagaaaaaaaacaaccaggattctgagtcaaagcaaagtgatcatcatgatgatgaaggagtagctgatcatcatgaggatgataatttgggagattggttgagcttaagcctcaataaaaatgatccatcatcaaaaccaggcagtagtagcagcaacaataaggttttctcatgcaacttctgcatgaggaagttttatagctcacaagccttgggaggccatcagaatgcacataaaagagaaagaggagctgcaaagaggtaccaatctcataggatgatgatgacaacgatgatggggtttcccttcaattctgtagcggctcgttcacttggtgttcagcctcattcacttgtgcagaaggaaaccagacaagggtcttcgacggtggctcgcacaggcggcgatggtttgagcactggttttggaatgccatggatgccattcatggttgaagatgctagggatatgatttggcacggaagtttccgagtggaacacagattgccaagtagtacagatgatcatcatcaatcagatcatgtacataataaacagctcgacttaaatttacggctgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009787 GO:0009788 GO:0009889 GO:0009966 GO:0009968 GO:0009987 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0023051 GO:0023057 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0044424 GO:0044464 GO:0046982 GO:0046983 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901135 GO:1901363 GO:1901419 GO:1901420 GO:1901564 GO:1901657 GO:1903506 GO:1905957 GO:1905958 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

223

Amino Acids

25.2

Weight (kDa)

6.15

Isoelectric Point (pI)

64.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016240)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g16970
malus_domestica	MD02G1180000.v1.1 MD15G1290700.v1.1
prunus_persica	Prupe.6G226200_v2.0.a1
pyrus_communis	pycom02g14590
rosa_chinensis	RchiOBHm_Chr2g0107071
rosa_laevigata	RLG00000017552
rosa_multiflora	Rmu_sc0004298.1_g000006
rosa_roxburghii	Rroxscaffold_2G00136640
rosa_rugosa	Rorug02G0140200
rosa_samantha	Rh2AG191000 Rh2BG202700 Rh2CG195900 Rh2DG198200
rosa_wichuraiana	Rw2G015070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	351
AccB1I	GGYRCC	1 cut(s)	351
AciI	CCGC	2 cut(s)	410, 492
AclWI	GGATC	1 cut(s)	206
AcsI	RAATTY	1 cut(s)	658
AdeI	CACNNNGTG	1 cut(s)	425
AfaI	GTAC	3 cut(s)	353, 607, 636
AfiI	CCNNNNNNNGG	1 cut(s)	465
AflII	CTTAAG	1 cut(s)	193
AgsI	TTSAA	2 cut(s)	400, 545
AjnI	CCWGG	3 cut(s)	72, 102, 226
AluBI	AGCT	5 cut(s)	152, 192, 291, 341, 649
AluI	AGCT	5 cut(s)	152, 192, 291, 341, 649
Alw21I	GWGCWC	1 cut(s)	509
AlwI	GGATC	1 cut(s)	206
AoxI	GGCC	1 cut(s)	307
ApeKI	GCWGC	2 cut(s)	240, 341
ApoI	RAATTY	1 cut(s)	658
Asp718I	GGTACC	1 cut(s)	351
BanI	GGYRCC	1 cut(s)	351
BbsI	GAAGAC	1 cut(s)	462
Bbv12I	GWGCWC	1 cut(s)	509
BbvI	GCAGC	2 cut(s)	252, 328
BccI	CCATC	4 cut(s)	223, 318, 379, 491
BciT130I	CCWGG	3 cut(s)	74, 104, 228
BclI	TGATCA	3 cut(s)	127, 154, 613
BfaI	CTAG	1 cut(s)	552
BfmI	CTRYAG	1 cut(s)	405
BfrI	CTTAAG	1 cut(s)	193
BisI	GCNGC	4 cut(s)	241, 342, 411, 493
BlsI	GCNGC	4 cut(s)	242, 343, 412, 494
Bme1390I	CCNGG	3 cut(s)	74, 104, 228
BmiI	GGNNCC	1 cut(s)	353
BmrFI	CCNGG	3 cut(s)	74, 104, 228
BmsI	GCATC	2 cut(s)	519, 538
BoxI	GACNNNNGTC	1 cut(s)	466
BpiI	GAAGAC	1 cut(s)	462
BsaBI	GATNNNNATC	2 cut(s)	615, 618
BsaJI	CCNNGG	2 cut(s)	300, 524
Bsc4I	CCNNNNNNNGG	1 cut(s)	465
Bse1I	ACTGG	1 cut(s)	514
Bse8I	GATNNNNATC	2 cut(s)	615, 618
BseBI	CCWGG	3 cut(s)	74, 104, 228
BseDI	CCNNGG	2 cut(s)	300, 524
BseGI	GGATG	3 cut(s)	172, 372, 534
BseJI	GATNNNNATC	2 cut(s)	615, 618
BseLI	CCNNNNNNNGG	1 cut(s)	465
BseMII	CTCAG	2 cut(s)	72, 102
BseNI	ACTGG	1 cut(s)	514
BseRI	GAGGAG	1 cut(s)	351
BseXI	GCAGC	2 cut(s)	252, 328
BsgI	GTGCAG	1 cut(s)	467
BshFI	GGCC	1 cut(s)	309
BshNI	GGYRCC	1 cut(s)	351
BsiHKAI	GWGCWC	1 cut(s)	509
BslI	CCNNNNNNNGG	1 cut(s)	465
BsmI	GAATGC	2 cut(s)	322, 525
BsnI	GGCC	1 cut(s)	309
Bsp1286I	GDGCHC	1 cut(s)	509
Bsp1407I	TGTACA	1 cut(s)	634
Bsp143I	GATC	5 cut(s)	127, 154, 211, 613, 628
Bsp19I	CCATGG	1 cut(s)	524
BspACI	CCGC	2 cut(s)	410, 492
BspANI	GGCC	1 cut(s)	309
BspCNI	CTCAG	2 cut(s)	73, 103
BspHI	TCATGA	2 cut(s)	133, 160
BspLI	GGNNCC	1 cut(s)	353
BspPI	GGATC	1 cut(s)	206
BspT107I	GGYRCC	1 cut(s)	351
BspTI	CTTAAG	1 cut(s)	193
BsrGI	TGTACA	1 cut(s)	634
BsrI	ACTGG	1 cut(s)	514
BssECI	CCNNGG	2 cut(s)	300, 524
BssMI	GATC	5 cut(s)	127, 154, 211, 613, 628
BssT1I	CCWWGG	2 cut(s)	300, 524
Bst2UI	CCWGG	3 cut(s)	74, 104, 228
Bst4CI	ACNGT	1 cut(s)	478
BstAFI	CTTAAG	1 cut(s)	193
BstAPI	GCANNNNNTGC	1 cut(s)	270
BstAUI	TGTACA	1 cut(s)	634
BstC8I	GCNNGC	1 cut(s)	484
BstDEI	CTNAG	2 cut(s)	81, 111
BstDSI	CCRYGG	1 cut(s)	524
BstF5I	GGATG	3 cut(s)	172, 372, 534
BstKTI	GATC	5 cut(s)	130, 157, 214, 616, 631
BstMBI	GATC	5 cut(s)	127, 154, 211, 613, 628
BstMWI	GCNNNNNNNGC	4 cut(s)	237, 270, 492, 529
BstNI	CCWGG	3 cut(s)	74, 104, 228
BstPAI	GACNNNNGTC	1 cut(s)	466
BstSCI	CCNGG	3 cut(s)	72, 102, 226
BstSFI	CTRYAG	1 cut(s)	405
BstV1I	GCAGC	2 cut(s)	252, 328
BstV2I	GAAGAC	1 cut(s)	462
BsuRI	GGCC	1 cut(s)	309
BtgI	CCRYGG	1 cut(s)	524
BtgZI	GCGATG	1 cut(s)	510
BtsCI	GGATG	3 cut(s)	172, 372, 534
BtsIMutI	CAGTG	1 cut(s)	507
Cac8I	GCNNGC	1 cut(s)	484
CciI	TCATGA	2 cut(s)	133, 160
Csp6I	GTAC	3 cut(s)	352, 606, 635
CviAII	CATG	7 cut(s)	134, 161, 261, 274, 525, 538, 632
CviQI	GTAC	3 cut(s)	352, 606, 635
DdeI	CTNAG	2 cut(s)	81, 111
DpnI	GATC	5 cut(s)	129, 156, 213, 615, 630
DpnII	GATC	5 cut(s)	127, 154, 211, 613, 628
DraIII	CACNNNGTG	1 cut(s)	425
Eco130I	CCWWGG	2 cut(s)	300, 524
EcoRII	CCWGG	3 cut(s)	72, 102, 226
EcoT14I	CCWWGG	2 cut(s)	300, 524
ErhI	CCWWGG	2 cut(s)	300, 524
FaeI	CATG	7 cut(s)	137, 164, 264, 277, 528, 541, 635
FatI	CATG	7 cut(s)	133, 160, 260, 273, 524, 537, 631
FauNDI	CATATG	1 cut(s)	52
FbaI	TGATCA	3 cut(s)	127, 154, 613
Fnu4HI	GCNGC	4 cut(s)	241, 342, 411, 493
FokI	GGATG	3 cut(s)	179, 379, 541
Fsp4HI	GCNGC	4 cut(s)	241, 342, 411, 493
FspBI	CTAG	1 cut(s)	552
GluI	GCNGC	4 cut(s)	241, 342, 411, 493
HaeIII	GGCC	1 cut(s)	309
Hin1II	CATG	7 cut(s)	137, 164, 264, 277, 528, 541, 635
HinfI	GANTC	5 cut(s)	4, 77, 83, 107, 113
Hpy166II	GTNNAC	1 cut(s)	419
Hpy188I	TCNGA	5 cut(s)	82, 112, 315, 581, 628
Hpy188III	TCNNGA	2 cut(s)	134, 161
Hpy8I	GTNNAC	1 cut(s)	419
Hpy99I	CGWCG	1 cut(s)	478
HpyAV	CCTTC	4 cut(s)	32, 137, 406, 445
HpyCH4III	ACNGT	1 cut(s)	478
HpyCH4V	TGCA	6 cut(s)	62, 264, 273, 320, 344, 448
HpyF10VI	GCNNNNNNNGC	4 cut(s)	237, 270, 492, 529
HpyF3I	CTNAG	2 cut(s)	81, 111
Hsp92II	CATG	7 cut(s)	137, 164, 264, 277, 528, 541, 635
KpnI	GGTACC	1 cut(s)	355
Ksp22I	TGATCA	3 cut(s)	127, 154, 613
Kzo9I	GATC	5 cut(s)	127, 154, 211, 613, 628
LmnI	GCTCC	1 cut(s)	338
LpnPI	CCDG	9 cut(s)	59, 86, 89, 116, 213, 240, 472, 474, 495
Lsp1109I	GCAGC	2 cut(s)	252, 328
LweI	GCATC	2 cut(s)	519, 538
MaeI	CTAG	1 cut(s)	552
MalI	GATC	5 cut(s)	129, 156, 213, 615, 630
MboI	GATC	5 cut(s)	127, 154, 211, 613, 628
MboII	GAAGA	6 cut(s)	38, 41, 44, 47, 462, 557
MhlI	GDGCHC	1 cut(s)	509
MluCI	AATT	3 cut(s)	172, 400, 658
MlyI	GAGTC	2 cut(s)	92, 122
MnlI	CCTC	7 cut(s)	157, 209, 270, 299, 329, 342, 444
MseI	TTAA	2 cut(s)	194, 656
MslI	CAYNNNNRTG	4 cut(s)	135, 138, 165, 315
MspCI	CTTAAG	1 cut(s)	193
MspR9I	CCNGG	3 cut(s)	74, 104, 228
Mva1269I	GAATGC	2 cut(s)	322, 525
MvaI	CCWGG	3 cut(s)	74, 104, 228
MwoI	GCNNNNNNNGC	4 cut(s)	237, 270, 492, 529
NcoI	CCATGG	1 cut(s)	524
NdeI	CATATG	1 cut(s)	52
NdeII	GATC	5 cut(s)	127, 154, 211, 613, 628
NlaIII	CATG	7 cut(s)	137, 164, 264, 277, 528, 541, 635
NlaIV	GGNNCC	1 cut(s)	353
PagI	TCATGA	2 cut(s)	133, 160
PctI	GAATGC	2 cut(s)	322, 525
PfeI	GAWTC	3 cut(s)	4, 77, 107
PkrI	GCNGC	4 cut(s)	242, 343, 412, 494
PleI	GAGTC	2 cut(s)	91, 121
PpsI	GAGTC	2 cut(s)	91, 121
PshAI	GACNNNNGTC	1 cut(s)	466
Psp6I	CCWGG	3 cut(s)	72, 102, 226
PspGI	CCWGG	3 cut(s)	72, 102, 226
PspN4I	GGNNCC	1 cut(s)	353
RsaI	GTAC	3 cut(s)	353, 607, 636
RsaNI	GTAC	3 cut(s)	352, 606, 635
RseI	CAYNNNNRTG	4 cut(s)	135, 138, 165, 315
SaqAI	TTAA	2 cut(s)	194, 656
SatI	GCNGC	4 cut(s)	241, 342, 411, 493
Sau3AI	GATC	5 cut(s)	127, 154, 211, 613, 628
SchI	GAGTC	2 cut(s)	92, 122
ScrFI	CCNGG	3 cut(s)	74, 104, 228
SduI	GDGCHC	1 cut(s)	509
SetI	ASST	7 cut(s)	154, 194, 255, 293, 343, 353, 651
SfaNI	GCATC	2 cut(s)	519, 538
SfcI	CTRYAG	1 cut(s)	405
SmiMI	CAYNNNNRTG	4 cut(s)	135, 138, 165, 315
SmlI	CTYRAG	1 cut(s)	193
SmoI	CTYRAG	1 cut(s)	193
Sse9I	AATT	3 cut(s)	172, 400, 658
SsiI	CCGC	2 cut(s)	410, 492
SspMI	CTAG	1 cut(s)	552
StyD4I	CCNGG	3 cut(s)	72, 102, 226
StyI	CCWWGG	2 cut(s)	300, 524
TaaI	ACNGT	1 cut(s)	478
TaqI	TCGA	2 cut(s)	473, 651
TasI	AATT	3 cut(s)	172, 400, 658
TatI	WGTACW	2 cut(s)	605, 634
TauI	GCSGC	2 cut(s)	413, 495
TfiI	GAWTC	3 cut(s)	4, 77, 107
Tru1I	TTAA	2 cut(s)	194, 656
Tru9I	TTAA	2 cut(s)	194, 656
TscAI	CASTG	1 cut(s)	514
TseI	GCWGC	2 cut(s)	240, 341
TspDTI	ATGAA	2 cut(s)	156, 526
TspGWI	ACGGA	1 cut(s)	585
TspRI	CASTG	1 cut(s)	514
Vha464I	CTTAAG	1 cut(s)	193
XapI	RAATTY	1 cut(s)	658
XspI	CTAG	1 cut(s)	552

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.