Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0016240

Physical Location & Seq

Genomic Coordinates Forward (+)

18727811 .. 18728452

Gene Structure 642 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG202700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGATTCCCACAAGGGCAGAACAAGAAGAAGAAGAAGAAGGAAAAAAAGCATATGAGATTGCAGAAAACAACCAGGATTCTGAGTCAAAGCAAAGTGATCATCATGATGATGAAGGAGTAGCTGATCATCATGAGGATGATAATTTGGGAGATTGGTTGAGCTTAAGCCTCAATAAAAATGATCCATCATCAAAACCAGGCAGTAGTAGCAGCAACAATAAGGTTTTCTCATGCAACTTCTGCATGAGGAAGTTTTATAGCTCACAAGCCTTGGGAGGCCATCAGAATGCACATAAAAGAGAAAGAGGAGCTGCAAAGAGGTACCAATCTCATAGGATGATGATGACAACGATGATGGGGTTTCCCTTCAATTCTGTAGCGGCTCGTTCACTTGGTGTTCAGCCTCATTCACTTGTGCAGAAGGAAACCAGACAAGGGTCTTCGACGGTGGCTCGCACAGGCGGCGATGGTTTGAGCACTGGTTTTGGAATGCCATGGATGCCATTCATGCTTGAAGATGCTAGGGATATGATTTGGCACGGAAGTTTCCGAGTGGAACACAGATTGCCAAGTAGTACAGATGATCATCATCAATCAGATCATGTACATAATAAACAGCTCGACTTAAATTTACGGCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009787 GO:0009788 GO:0009889 GO:0009966 GO:0009968 GO:0009987 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0023051 GO:0023057 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0044424 GO:0044464 GO:0046982 GO:0046983 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901135 GO:1901363 GO:1901419 GO:1901420 GO:1901564 GO:1901657 GO:1903506 GO:1905957 GO:1905958 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

213

Amino Acids

24.06

Weight (kDa)

6.04

Isoelectric Point (pI)

64.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016240)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g16970
malus_domestica	MD02G1180000.v1.1 MD15G1290700.v1.1
prunus_persica	Prupe.6G226200_v2.0.a1
pyrus_communis	pycom02g14590
rosa_chinensis	RchiOBHm_Chr2g0107071
rosa_laevigata	RLG00000017552
rosa_multiflora	Rmu_sc0004298.1_g000006
rosa_roxburghii	Rroxscaffold_2G00136640
rosa_rugosa	Rorug02G0140200
rosa_samantha	Rh2AG191000 Rh2BG202700 Rh2CG195900 Rh2DG198200
rosa_wichuraiana	Rw2G015070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	321
AccB1I	GGYRCC	1 cut(s)	321
AciI	CCGC	2 cut(s)	380, 462
AclWI	GGATC	1 cut(s)	176
AcsI	RAATTY	1 cut(s)	628
AdeI	CACNNNGTG	1 cut(s)	395
AfaI	GTAC	3 cut(s)	323, 577, 606
AfiI	CCNNNNNNNGG	1 cut(s)	435
AflII	CTTAAG	1 cut(s)	163
AgsI	TTSAA	2 cut(s)	370, 515
AjnI	CCWGG	2 cut(s)	72, 196
AluBI	AGCT	5 cut(s)	122, 162, 261, 311, 619
AluI	AGCT	5 cut(s)	122, 162, 261, 311, 619
Alw21I	GWGCWC	1 cut(s)	479
AlwI	GGATC	1 cut(s)	176
AoxI	GGCC	1 cut(s)	277
ApeKI	GCWGC	2 cut(s)	210, 311
ApoI	RAATTY	1 cut(s)	628
Asp718I	GGTACC	1 cut(s)	321
BanI	GGYRCC	1 cut(s)	321
BbsI	GAAGAC	1 cut(s)	432
Bbv12I	GWGCWC	1 cut(s)	479
BbvI	GCAGC	2 cut(s)	222, 298
BccI	CCATC	4 cut(s)	193, 288, 349, 461
BciT130I	CCWGG	2 cut(s)	74, 198
BclI	TGATCA	3 cut(s)	97, 124, 583
BfaI	CTAG	1 cut(s)	522
BfmI	CTRYAG	1 cut(s)	375
BfrI	CTTAAG	1 cut(s)	163
BisI	GCNGC	4 cut(s)	211, 312, 381, 463
BlsI	GCNGC	4 cut(s)	212, 313, 382, 464
Bme1390I	CCNGG	2 cut(s)	74, 198
BmiI	GGNNCC	1 cut(s)	323
BmrFI	CCNGG	2 cut(s)	74, 198
BmsI	GCATC	2 cut(s)	489, 508
BoxI	GACNNNNGTC	1 cut(s)	436
BpiI	GAAGAC	1 cut(s)	432
BsaBI	GATNNNNATC	2 cut(s)	585, 588
BsaJI	CCNNGG	2 cut(s)	270, 494
Bsc4I	CCNNNNNNNGG	1 cut(s)	435
Bse1I	ACTGG	1 cut(s)	484
Bse8I	GATNNNNATC	2 cut(s)	585, 588
BseBI	CCWGG	2 cut(s)	74, 198
BseDI	CCNNGG	2 cut(s)	270, 494
BseGI	GGATG	3 cut(s)	142, 342, 504
BseJI	GATNNNNATC	2 cut(s)	585, 588
BseLI	CCNNNNNNNGG	1 cut(s)	435
BseMII	CTCAG	1 cut(s)	72
BseNI	ACTGG	1 cut(s)	484
BseRI	GAGGAG	1 cut(s)	321
BseXI	GCAGC	2 cut(s)	222, 298
BsgI	GTGCAG	1 cut(s)	437
BshFI	GGCC	1 cut(s)	279
BshNI	GGYRCC	1 cut(s)	321
BsiHKAI	GWGCWC	1 cut(s)	479
BslI	CCNNNNNNNGG	1 cut(s)	435
BsmI	GAATGC	2 cut(s)	292, 495
BsnI	GGCC	1 cut(s)	279
Bsp1286I	GDGCHC	1 cut(s)	479
Bsp1407I	TGTACA	1 cut(s)	604
Bsp143I	GATC	5 cut(s)	97, 124, 181, 583, 598
Bsp19I	CCATGG	1 cut(s)	494
BspACI	CCGC	2 cut(s)	380, 462
BspANI	GGCC	1 cut(s)	279
BspCNI	CTCAG	1 cut(s)	73
BspHI	TCATGA	2 cut(s)	103, 130
BspLI	GGNNCC	1 cut(s)	323
BspPI	GGATC	1 cut(s)	176
BspT107I	GGYRCC	1 cut(s)	321
BspTI	CTTAAG	1 cut(s)	163
BsrGI	TGTACA	1 cut(s)	604
BsrI	ACTGG	1 cut(s)	484
BssECI	CCNNGG	2 cut(s)	270, 494
BssMI	GATC	5 cut(s)	97, 124, 181, 583, 598
BssT1I	CCWWGG	2 cut(s)	270, 494
Bst2UI	CCWGG	2 cut(s)	74, 198
Bst4CI	ACNGT	1 cut(s)	448
BstAFI	CTTAAG	1 cut(s)	163
BstAPI	GCANNNNNTGC	1 cut(s)	240
BstAUI	TGTACA	1 cut(s)	604
BstC8I	GCNNGC	1 cut(s)	454
BstDEI	CTNAG	1 cut(s)	81
BstDSI	CCRYGG	1 cut(s)	494
BstF5I	GGATG	3 cut(s)	142, 342, 504
BstKTI	GATC	5 cut(s)	100, 127, 184, 586, 601
BstMBI	GATC	5 cut(s)	97, 124, 181, 583, 598
BstMWI	GCNNNNNNNGC	5 cut(s)	207, 240, 462, 499, 508
BstNI	CCWGG	2 cut(s)	74, 198
BstPAI	GACNNNNGTC	1 cut(s)	436
BstSCI	CCNGG	2 cut(s)	72, 196
BstSFI	CTRYAG	1 cut(s)	375
BstV1I	GCAGC	2 cut(s)	222, 298
BstV2I	GAAGAC	1 cut(s)	432
BsuRI	GGCC	1 cut(s)	279
BtgI	CCRYGG	1 cut(s)	494
BtgZI	GCGATG	1 cut(s)	480
BtsCI	GGATG	3 cut(s)	142, 342, 504
BtsIMutI	CAGTG	1 cut(s)	477
Cac8I	GCNNGC	1 cut(s)	454
CciI	TCATGA	2 cut(s)	103, 130
Csp6I	GTAC	3 cut(s)	322, 576, 605
CviAII	CATG	7 cut(s)	104, 131, 231, 244, 495, 508, 602
CviQI	GTAC	3 cut(s)	322, 576, 605
DdeI	CTNAG	1 cut(s)	81
DpnI	GATC	5 cut(s)	99, 126, 183, 585, 600
DpnII	GATC	5 cut(s)	97, 124, 181, 583, 598
DraIII	CACNNNGTG	1 cut(s)	395
Eco130I	CCWWGG	2 cut(s)	270, 494
EcoRII	CCWGG	2 cut(s)	72, 196
EcoT14I	CCWWGG	2 cut(s)	270, 494
ErhI	CCWWGG	2 cut(s)	270, 494
FaeI	CATG	7 cut(s)	107, 134, 234, 247, 498, 511, 605
FatI	CATG	7 cut(s)	103, 130, 230, 243, 494, 507, 601
FauNDI	CATATG	1 cut(s)	52
FbaI	TGATCA	3 cut(s)	97, 124, 583
Fnu4HI	GCNGC	4 cut(s)	211, 312, 381, 463
FokI	GGATG	3 cut(s)	149, 349, 511
Fsp4HI	GCNGC	4 cut(s)	211, 312, 381, 463
FspBI	CTAG	1 cut(s)	522
GluI	GCNGC	4 cut(s)	211, 312, 381, 463
HaeIII	GGCC	1 cut(s)	279
Hin1II	CATG	7 cut(s)	107, 134, 234, 247, 498, 511, 605
HinfI	GANTC	3 cut(s)	4, 77, 83
Hpy166II	GTNNAC	1 cut(s)	389
Hpy188I	TCNGA	4 cut(s)	82, 285, 551, 598
Hpy188III	TCNNGA	2 cut(s)	104, 131
Hpy8I	GTNNAC	1 cut(s)	389
Hpy99I	CGWCG	1 cut(s)	448
HpyAV	CCTTC	4 cut(s)	32, 107, 376, 415
HpyCH4III	ACNGT	1 cut(s)	448
HpyCH4V	TGCA	6 cut(s)	62, 234, 243, 290, 314, 418
HpyF10VI	GCNNNNNNNGC	5 cut(s)	207, 240, 462, 499, 508
HpyF3I	CTNAG	1 cut(s)	81
Hsp92II	CATG	7 cut(s)	107, 134, 234, 247, 498, 511, 605
KpnI	GGTACC	1 cut(s)	325
Ksp22I	TGATCA	3 cut(s)	97, 124, 583
Kzo9I	GATC	5 cut(s)	97, 124, 181, 583, 598
LmnI	GCTCC	1 cut(s)	308
LpnPI	CCDG	7 cut(s)	59, 86, 183, 210, 442, 444, 465
Lsp1109I	GCAGC	2 cut(s)	222, 298
LweI	GCATC	2 cut(s)	489, 508
MaeI	CTAG	1 cut(s)	522
MalI	GATC	5 cut(s)	99, 126, 183, 585, 600
MboI	GATC	5 cut(s)	97, 124, 181, 583, 598
MboII	GAAGA	6 cut(s)	38, 41, 44, 47, 432, 527
MhlI	GDGCHC	1 cut(s)	479
MluCI	AATT	3 cut(s)	142, 370, 628
MlyI	GAGTC	1 cut(s)	92
MnlI	CCTC	7 cut(s)	127, 179, 240, 269, 299, 312, 414
MseI	TTAA	2 cut(s)	164, 626
MslI	CAYNNNNRTG	4 cut(s)	105, 108, 135, 285
MspCI	CTTAAG	1 cut(s)	163
MspR9I	CCNGG	2 cut(s)	74, 198
Mva1269I	GAATGC	2 cut(s)	292, 495
MvaI	CCWGG	2 cut(s)	74, 198
MwoI	GCNNNNNNNGC	5 cut(s)	207, 240, 462, 499, 508
NcoI	CCATGG	1 cut(s)	494
NdeI	CATATG	1 cut(s)	52
NdeII	GATC	5 cut(s)	97, 124, 181, 583, 598
NlaIII	CATG	7 cut(s)	107, 134, 234, 247, 498, 511, 605
NlaIV	GGNNCC	1 cut(s)	323
PagI	TCATGA	2 cut(s)	103, 130
PctI	GAATGC	2 cut(s)	292, 495
PfeI	GAWTC	2 cut(s)	4, 77
PkrI	GCNGC	4 cut(s)	212, 313, 382, 464
PleI	GAGTC	1 cut(s)	91
PpsI	GAGTC	1 cut(s)	91
PshAI	GACNNNNGTC	1 cut(s)	436
Psp6I	CCWGG	2 cut(s)	72, 196
PspGI	CCWGG	2 cut(s)	72, 196
PspN4I	GGNNCC	1 cut(s)	323
RsaI	GTAC	3 cut(s)	323, 577, 606
RsaNI	GTAC	3 cut(s)	322, 576, 605
RseI	CAYNNNNRTG	4 cut(s)	105, 108, 135, 285
SaqAI	TTAA	2 cut(s)	164, 626
SatI	GCNGC	4 cut(s)	211, 312, 381, 463
Sau3AI	GATC	5 cut(s)	97, 124, 181, 583, 598
SchI	GAGTC	1 cut(s)	92
ScrFI	CCNGG	2 cut(s)	74, 198
SduI	GDGCHC	1 cut(s)	479
SetI	ASST	7 cut(s)	124, 164, 225, 263, 313, 323, 621
SfaNI	GCATC	2 cut(s)	489, 508
SfcI	CTRYAG	1 cut(s)	375
SmiMI	CAYNNNNRTG	4 cut(s)	105, 108, 135, 285
SmlI	CTYRAG	1 cut(s)	163
SmoI	CTYRAG	1 cut(s)	163
Sse9I	AATT	3 cut(s)	142, 370, 628
SsiI	CCGC	2 cut(s)	380, 462
SspMI	CTAG	1 cut(s)	522
StyD4I	CCNGG	2 cut(s)	72, 196
StyI	CCWWGG	2 cut(s)	270, 494
TaaI	ACNGT	1 cut(s)	448
TaqI	TCGA	2 cut(s)	443, 621
TasI	AATT	3 cut(s)	142, 370, 628
TatI	WGTACW	2 cut(s)	575, 604
TauI	GCSGC	2 cut(s)	383, 465
TfiI	GAWTC	2 cut(s)	4, 77
Tru1I	TTAA	2 cut(s)	164, 626
Tru9I	TTAA	2 cut(s)	164, 626
TscAI	CASTG	1 cut(s)	484
TseI	GCWGC	2 cut(s)	210, 311
TspDTI	ATGAA	2 cut(s)	126, 496
TspGWI	ACGGA	1 cut(s)	555
TspRI	CASTG	1 cut(s)	484
Vha464I	CTTAAG	1 cut(s)	163
XapI	RAATTY	1 cut(s)	628
XspI	CTAG	1 cut(s)	522

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.