Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0016240

Physical Location & Seq

Genomic Coordinates Forward (+)

11163391 .. 11163972

Gene Structure 582 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g14590.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGATTCCCAAAAGGGAGCAAGAAAGAGAAGCAGAAGCACAGGAAGTAAATGATGAGATTACAGAAGGTAATGATGAAAGATTAGCTGATGATCATGAAGATGATAATTTGGGAGACTGGTTGAGTTTAAGCCTCAACTCCAACGAGCCATCCGCGGCGGAAGTCGACGCCGATTTTCCGTCACCAAAACCCTCAAATAGCAAAAAAGTTTTCTCATGCAACTTTTGTCTGAGGAAATTTTACAGTTCTCAAGCCTTGGGAGGCCATCAAAACGCACACAAGAGAGAGAGGGGAGCTGCCAAAAGGTATCACTCTCACAAAATGATGATGTCAGCAATGGGGTTTCCGTCCAGCCCTGTGGCTGCAGCAGCTAGGTCACTTGGCGTCCAGCCTCATTCACTCGTGCAGAAACCTAGCAGCAGGTCTGATGGGTCGTCAATGGTGGCGAGATTTAGTGACGCCGCCGCAGGTTTTGGGATGGCATGGACACCCTTCATGCTTGAAGAAACCATGAATAATATTTGGCCCGGAAGTTTCCGGGTGGATCGATCAATTGCCACGACAAGAATCACATGTACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009787 GO:0009788 GO:0009889 GO:0009966 GO:0009968 GO:0009987 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0023051 GO:0023057 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0044424 GO:0044464 GO:0046982 GO:0046983 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901135 GO:1901363 GO:1901419 GO:1901420 GO:1901564 GO:1901657 GO:1903506 GO:1905957 GO:1905958 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

194

Amino Acids

21.3

Weight (kDa)

5.87

Isoelectric Point (pI)

60.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016240)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g16970
malus_domestica	MD02G1180000.v1.1 MD15G1290700.v1.1
prunus_persica	Prupe.6G226200_v2.0.a1
pyrus_communis	pycom02g14590
rosa_chinensis	RchiOBHm_Chr2g0107071
rosa_laevigata	RLG00000017552
rosa_multiflora	Rmu_sc0004298.1_g000006
rosa_roxburghii	Rroxscaffold_2G00136640
rosa_rugosa	Rorug02G0140200
rosa_samantha	Rh2AG191000 Rh2BG202700 Rh2CG195900 Rh2DG198200
rosa_wichuraiana	Rw2G015070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	411, 458
AccI	GTMKAC	1 cut(s)	165
AccII	CGCG	1 cut(s)	155
AciI	CCGC	5 cut(s)	153, 155, 158, 462, 465
AclWI	GGATC	1 cut(s)	552
AcsI	RAATTY	1 cut(s)	236
AcyI	GRCGYC	3 cut(s)	168, 384, 459
AfaI	GTAC	1 cut(s)	577
AflIII	ACRYGT	1 cut(s)	572
AgsI	TTSAA	1 cut(s)	503
AluBI	AGCT	3 cut(s)	86, 296, 371
AluI	AGCT	3 cut(s)	86, 296, 371
Alw26I	GTCTC	1 cut(s)	108
AlwI	GGATC	1 cut(s)	552
AoxI	GGCC	2 cut(s)	262, 524
ApeKI	GCWGC	5 cut(s)	296, 362, 365, 368, 417
ApoI	RAATTY	1 cut(s)	236
AspS9I	GGNCC	1 cut(s)	525
AsuC2I	CCSGG	2 cut(s)	528, 539
AsuHPI	GGTGA	1 cut(s)	174
BauI	CACGAG	1 cut(s)	401
BbvI	GCAGC	5 cut(s)	283, 349, 377, 380, 429
BccI	CCATC	4 cut(s)	157, 273, 422, 472
BclI	TGATCA	1 cut(s)	91
BcnI	CCSGG	2 cut(s)	528, 539
BcoDI	GTCTC	1 cut(s)	108
BfaI	CTAG	2 cut(s)	372, 414
BfmI	CTRYAG	1 cut(s)	363
BfuAI	ACCTGC	2 cut(s)	411, 458
BisI	GCNGC	8 cut(s)	156, 297, 363, 366, 369, 418, 462, 465
BlsI	GCNGC	8 cut(s)	157, 298, 364, 367, 370, 419, 463, 466
Bme1390I	CCNGG	2 cut(s)	528, 539
BmgT120I	GGNCC	1 cut(s)	525
BmrFI	CCNGG	2 cut(s)	528, 539
BpuEI	CTTGAG	1 cut(s)	234
BpuMI	CCSGG	2 cut(s)	528, 539
Bsa29I	ATCGAT	1 cut(s)	547
BsaHI	GRCGYC	3 cut(s)	168, 384, 459
BsaJI	CCNNGG	2 cut(s)	153, 255
Bse1I	ACTGG	1 cut(s)	122
Bse3DI	GCAATG	1 cut(s)	342
BseCI	ATCGAT	1 cut(s)	547
BseDI	CCNNGG	2 cut(s)	153, 255
BseGI	GGATG	2 cut(s)	149, 483
BseMI	GCAATG	1 cut(s)	342
BseMII	CTCAG	1 cut(s)	221
BseNI	ACTGG	1 cut(s)	122
BseXI	GCAGC	5 cut(s)	283, 349, 377, 380, 429
BsgI	GTGCAG	1 cut(s)	425
Bsh1236I	CGCG	1 cut(s)	155
BshFI	GGCC	2 cut(s)	264, 526
BshVI	ATCGAT	1 cut(s)	547
BsiSI	CCGG	2 cut(s)	528, 538
BsmAI	GTCTC	1 cut(s)	108
BsnI	GGCC	2 cut(s)	264, 526
Bsp1407I	TGTACA	1 cut(s)	575
Bsp143I	GATC	3 cut(s)	91, 544, 548
BspACI	CCGC	5 cut(s)	153, 155, 158, 462, 465
BspANI	GGCC	2 cut(s)	264, 526
BspCNI	CTCAG	1 cut(s)	222
BspDI	ATCGAT	1 cut(s)	547
BspFNI	CGCG	1 cut(s)	155
BspHI	TCATGA	1 cut(s)	94
BspMAI	CTGCAG	1 cut(s)	367
BspMI	ACCTGC	2 cut(s)	411, 458
BspPI	GGATC	1 cut(s)	552
BsrDI	GCAATG	1 cut(s)	342
BsrGI	TGTACA	1 cut(s)	575
BsrI	ACTGG	1 cut(s)	122
BssECI	CCNNGG	2 cut(s)	153, 255
BssMI	GATC	3 cut(s)	91, 544, 548
BssNI	GRCGYC	3 cut(s)	168, 384, 459
BssSI	CACGAG	1 cut(s)	401
BssT1I	CCWWGG	1 cut(s)	255
Bst2BI	CACGAG	1 cut(s)	401
Bst4CI	ACNGT	1 cut(s)	245
BstACI	GRCGYC	3 cut(s)	168, 384, 459
BstAUI	TGTACA	1 cut(s)	575
BstDEI	CTNAG	1 cut(s)	230
BstDSI	CCRYGG	1 cut(s)	153
BstF5I	GGATG	2 cut(s)	149, 483
BstFNI	CGCG	1 cut(s)	155
BstKTI	GATC	3 cut(s)	94, 547, 551
BstMAI	GTCTC	1 cut(s)	108
BstMBI	GATC	3 cut(s)	91, 544, 548
BstMWI	GCNNNNNNNGC	1 cut(s)	368
BstNSI	RCATGY	1 cut(s)	576
BstSCI	CCNGG	2 cut(s)	526, 537
BstSFI	CTRYAG	1 cut(s)	363
BstUI	CGCG	1 cut(s)	155
BstV1I	GCAGC	5 cut(s)	283, 349, 377, 380, 429
BstXI	CCANNNNNNTGG	1 cut(s)	358
Bsu15I	ATCGAT	1 cut(s)	547
BsuRI	GGCC	2 cut(s)	264, 526
BsuTUI	ATCGAT	1 cut(s)	547
BtgI	CCRYGG	1 cut(s)	153
BtsCI	GGATG	2 cut(s)	149, 483
BveI	ACCTGC	2 cut(s)	411, 458
CciI	TCATGA	1 cut(s)	94
Cfr13I	GGNCC	1 cut(s)	525
Cfr42I	CCGCGG	1 cut(s)	156
ClaI	ATCGAT	1 cut(s)	547
CseI	GACGC	3 cut(s)	176, 373, 467
Csp6I	GTAC	1 cut(s)	576
CviAII	CATG	6 cut(s)	95, 216, 483, 496, 511, 573
CviQI	GTAC	1 cut(s)	576
DdeI	CTNAG	1 cut(s)	230
DpnI	GATC	3 cut(s)	93, 546, 550
DpnII	GATC	3 cut(s)	91, 544, 548
EciI	GGCGGA	1 cut(s)	173
Eco130I	CCWWGG	1 cut(s)	255
EcoT14I	CCWWGG	1 cut(s)	255
ErhI	CCWWGG	1 cut(s)	255
FaeI	CATG	6 cut(s)	98, 219, 486, 499, 514, 576
FaiI	YATR	7 cut(s)	96, 217, 484, 497, 512, 574, 580
FatI	CATG	6 cut(s)	94, 215, 482, 495, 510, 572
FbaI	TGATCA	1 cut(s)	91
FblI	GTMKAC	1 cut(s)	165
Fnu4HI	GCNGC	8 cut(s)	156, 297, 363, 366, 369, 418, 462, 465
FokI	GGATG	2 cut(s)	136, 490
Fsp4HI	GCNGC	8 cut(s)	156, 297, 363, 366, 369, 418, 462, 465
FspBI	CTAG	2 cut(s)	372, 414
GluI	GCNGC	8 cut(s)	156, 297, 363, 366, 369, 418, 462, 465
HaeIII	GGCC	2 cut(s)	264, 526
HapII	CCGG	2 cut(s)	528, 538
HgaI	GACGC	3 cut(s)	176, 373, 467
Hin1I	GRCGYC	3 cut(s)	168, 384, 459
Hin1II	CATG	6 cut(s)	98, 219, 486, 499, 514, 576
HincII	GTYRAC	1 cut(s)	166
HindII	GTYRAC	1 cut(s)	166
HinfI	GANTC	2 cut(s)	4, 567
HpaII	CCGG	2 cut(s)	528, 538
HphI	GGTGA	1 cut(s)	174
Hpy166II	GTNNAC	1 cut(s)	166
Hpy188I	TCNGA	2 cut(s)	231, 427
Hpy188III	TCNNGA	1 cut(s)	95
Hpy8I	GTNNAC	1 cut(s)	166
Hpy99I	CGWCG	1 cut(s)	170
HpyAV	CCTTC	2 cut(s)	59, 502
HpyCH4III	ACNGT	1 cut(s)	245
HpyCH4V	TGCA	3 cut(s)	219, 365, 406
HpyF10VI	GCNNNNNNNGC	1 cut(s)	368
HpyF3I	CTNAG	1 cut(s)	230
Hsp92I	GRCGYC	3 cut(s)	168, 384, 459
Hsp92II	CATG	6 cut(s)	98, 219, 486, 499, 514, 576
Ksp22I	TGATCA	1 cut(s)	91
KspI	CCGCGG	1 cut(s)	156
Kzo9I	GATC	3 cut(s)	91, 544, 548
LmnI	GCTCC	2 cut(s)	16, 293
LpnPI	CCDG	9 cut(s)	26, 103, 364, 369, 401, 406, 453, 541, 551
Lsp1109I	GCAGC	5 cut(s)	283, 349, 377, 380, 429
MaeI	CTAG	2 cut(s)	372, 414
MaeIII	GTNAC	3 cut(s)	180, 375, 455
MalI	GATC	3 cut(s)	93, 546, 550
MboI	GATC	3 cut(s)	91, 544, 548
MboII	GAAGA	2 cut(s)	110, 515
MfeI	CAATTG	1 cut(s)	552
MluCI	AATT	3 cut(s)	106, 236, 552
MmeI	TCCRAC	1 cut(s)	165
MnlI	CCTC	6 cut(s)	143, 202, 225, 254, 282, 402
MseI	TTAA	1 cut(s)	128
MslI	CAYNNNNRTG	1 cut(s)	99
MspA1I	CMGCKG	1 cut(s)	155
MspI	CCGG	2 cut(s)	528, 538
MspR9I	CCNGG	2 cut(s)	528, 539
MunI	CAATTG	1 cut(s)	552
MvnI	CGCG	1 cut(s)	155
MwoI	GCNNNNNNNGC	1 cut(s)	368
NciI	CCSGG	2 cut(s)	528, 539
NdeII	GATC	3 cut(s)	91, 544, 548
NlaIII	CATG	6 cut(s)	98, 219, 486, 499, 514, 576
NmuCI	GTSAC	3 cut(s)	180, 375, 455
NspI	RCATGY	1 cut(s)	576
PagI	TCATGA	1 cut(s)	94
PciI	ACATGT	1 cut(s)	572
PfeI	GAWTC	2 cut(s)	4, 567
PkrI	GCNGC	8 cut(s)	157, 298, 364, 367, 370, 419, 463, 466
PscI	ACATGT	1 cut(s)	572
PspPI	GGNCC	1 cut(s)	525
PstI	CTGCAG	1 cut(s)	367
RsaI	GTAC	1 cut(s)	577
RsaNI	GTAC	1 cut(s)	576
RseI	CAYNNNNRTG	1 cut(s)	99
SacII	CCGCGG	1 cut(s)	156
SalI	GTCGAC	1 cut(s)	164
SaqAI	TTAA	1 cut(s)	128
SatI	GCNGC	8 cut(s)	156, 297, 363, 366, 369, 418, 462, 465
Sau3AI	GATC	3 cut(s)	91, 544, 548
Sau96I	GGNCC	1 cut(s)	525
ScrFI	CCNGG	2 cut(s)	528, 539
SetI	ASST	9 cut(s)	70, 88, 298, 308, 373, 377, 415, 425, 472
SfcI	CTRYAG	1 cut(s)	363
Sfr303I	CCGCGG	1 cut(s)	156
SgrBI	CCGCGG	1 cut(s)	156
SmiMI	CAYNNNNRTG	1 cut(s)	99
SmlI	CTYRAG	1 cut(s)	249
SmoI	CTYRAG	1 cut(s)	249
Sse9I	AATT	3 cut(s)	106, 236, 552
SsiI	CCGC	5 cut(s)	153, 155, 158, 462, 465
SspI	AATATT	1 cut(s)	520
SspMI	CTAG	2 cut(s)	372, 414
StyD4I	CCNGG	2 cut(s)	526, 537
StyI	CCWWGG	1 cut(s)	255
TaaI	ACNGT	1 cut(s)	245
TaqI	TCGA	2 cut(s)	165, 547
TasI	AATT	3 cut(s)	106, 236, 552
TatI	WGTACW	1 cut(s)	575
TauI	GCSGC	3 cut(s)	158, 464, 467
TfiI	GAWTC	2 cut(s)	4, 567
Tru1I	TTAA	1 cut(s)	128
Tru9I	TTAA	1 cut(s)	128
TseFI	GTSAC	3 cut(s)	180, 375, 455
TseI	GCWGC	5 cut(s)	296, 362, 365, 368, 417
Tsp45I	GTSAC	3 cut(s)	180, 375, 455
TspDTI	ATGAA	4 cut(s)	90, 111, 484, 527
TspGWI	ACGGA	2 cut(s)	168, 336
XapI	RAATTY	1 cut(s)	236
XceI	RCATGY	1 cut(s)	576
XmiI	GTMKAC	1 cut(s)	165
XspI	CTAG	2 cut(s)	372, 414

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.